* py-basemap
* Updated versions + URL attribute
* Update var/spack/repos/builtin/packages/py-basemap/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-basemap/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removed unnecssary comment
* flake8
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding external support for mvapich2.
This picks up all the options that are currently settable by
the spack package. It also detects the compiler and sets it
appropriately.
* Removing debugging printing.
* Adding changes suggested by @nithintsk
+ Added version 2.1.9
+ Previously the SZ package incorrectly depended on CMake without a
version dependancy, but actually version 3.13 or newer is required
+ Added myself as a maintainer for the SZ spack package
This is a bug release with some new features and bug fixes. Among them:
[Batch] Set number of MPI processes for SLURM. (Ben Tovar)
[General] Use the right signature when overriding gettimeofday. (Tim
Shaffer)
[Resource Monitor] Add context-switch count to final summary. (Ben
Tovar)
[Resource Monitor] Fix kbps to Mbps typo in final summary. (Ben Tovar)
[WorkQueue] Update example apps to python3. (Douglas Thain)
* samtools: Add version 0.1.8 for OSS soapdenovo-trans.
* Add depend on zlib and samtools to build on aarch64.
* soapdenovo-trans: Change the condition of depend on zlib and samtools.
* New package: cxxopts
* Use +unicode instead of unicode=True
- Make the unicode option more explicit
* Add two new variants to spack for upcoming 1.5, stable and develop
* Add as maintainer
* Add depends_on on clauses
* Remove unrelated change
* qgis
* Update package.py
QGIS 3.12.1 can use PROJ >= 4.9.3. Therefore both version restrictions on PROJ were incorrect.
https://github.com/qgis/QGIS/blob/final-3_12_1/INSTALL
* Update package.py
Add explanation to (hopefully temporary) removal of hdf5 dependency.
* Remove overly restrictive GRASS version number.
* flake8
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Set location for dependencies specifying explicitly both
the include and lib path. This permits to handle cases where
the libraries are installed in lib64 instead of lib.
fixes#17556fixes#10842closes#18150
- add cuda variant, enabled by default, but conflicting with
strumpack@:3.9.999
- add zfp variant, enabled by default, but conflicting with
strumpack@:3.9.999
- update minimum CMake version to 3.11
- for version 4.0.0:, do not use mpi wrappers. v4.0.0 uses CMake
MPI targets
- for version 4.0.0, add dependency on butterflypack@1.2.0:
- remove versions 3.1.0 and older
- make parmetis variant True by default
- add TODO for slate variant (spack package not ready yet)
While I believe there must have been a reason to restrict libtool to <=
2.4.2, adios compiles just fine with libtool 2.4.6 for me.
In fact, without this change, I'm getting this error:
libtool: Version mismatch error. This is libtool 2.4.6, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.6
This doesn't make much sense, since spack did build libtool@2.4.2 as a
dependency, and was supposedly trying to use it. My guess is that on
this system (NERSC's cori) the system libtool in /usr/bin, which is
2.4.6 somehow got picked up partially.
Semi-recently the lua spackage was updated to explicitly add libtinfow
to the lua build line. Ncurses provides this but only when the +termlib
variant is enabled
* New interface reconstruction package
* forgot to put in CMake option for Jali
* cleanup whitespace
* fix lines with more than 79 chars
* more long line cleanup
* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
* New interface reconstruction package
* forgot to put in CMake option for Jali
* cleanup whitespace
* fix lines with more than 79 chars
* more long line cleanup
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
See #18033
libssh seemed to detect and link to system krb5 libraries if found
to provide gssapi support, causing issues/system dependencies/etc.
We add a boolean variant gssapi
If +gssapi, the spack krb5 package is added as a dependency.
If ~gssapi, the Cmake flags are adjusted to not use gssapi so that
does not link to any krb5 package.
xz-utils already builds a shared library. The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
* Add Collier and SysCalc recipes
* Remove extra syscalc version
* Build collier with -j1 for @:1.2.4
* Add recipe for gosam-contrib
* Update gosam-contrib recipe with 'provides'
* Madgraph recipe, first version
* Finalize madgraph recipe + flake8
* Make py2 version of madgraph default; fix hash for syscalc; fix patch
* Handle virtual packages (#3)
* Update package.py
* Update packages.yaml
* Remove virtual packages - pt. 1
* Remove virtual packages - pt. 2
* Changes from review - pt. 1
* Changes from code review - pt. 2
* Update var/spack/repos/builtin/packages/collier/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/madgraph5amc/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add hash for version 2.7.2 (available in our private mirror)
* Fixes for 2.7.3 family
* Patches for 2.7.3{.py3,}{.atlas,}
* Fix hash of syscalc
* Hack to fix concretization (2.7.3 matches 2.7.3.py3)
* Add conflict statement (reported to devs)
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
* Delete madgraph5amc-2.7.2.atlas.patch
* Delete madgraph5amc-2.7.2.patch
* Update package.py
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding new packages Mvapich2x and Mvapich2-GDR which can be installed only via binary mirrors
* Added docstring descriptions to both packages
* Removed variant wrapper for cuda dependencies
* Fixed multiple flake8 errors
* Updated APIs to pass unit tests
* Updated APIs for MVAPICH2-X package and fixed flake8 warnings for MVAPICH2-GDR
* Changed url back to single line
* Removed extra parantesis around URL string
Co-authored-by: nithintsk <nithintsk@github.com>
* [root] add dataframe cmake option
@chissg @HadrienG2 @drbenmorgan
This has been a separate cmake option starting v6-19 I believe: 31292b9082
It should default to true -- not sure why, but this recipe sets it to off.
I could add a variant too, but since it has become an integral part of root and doesn't introduce extra dependencies, I'd propose to just set it to true like I do here.
* Update package.py
* Update the change to add gomp compatibity to llvm-openmp.
* Update the change to add gomp compatibity to llvm-openmp using append instead of extend.
* Fix flake8 issue.
Co-authored-by: Jim Galarowicz <jgalarowicz@newmexicoconsortium.org>
* pFUnit: Added support for version 4
pFUnit v4 uses submodules, so we must fetch from the repo rather
than grabbing the tarball (see #11642).
* pFUnit: Added conflicts
pFUnit 4 causes an internal compiler error with gcc 7.2.0, and
several pFUnit versions are incompatible with shared libraries.
* pFUnit: Added conflicts for version 4
Verson 4 uses Fortran 2008 features and cannot be built with gcc
compilers prior to 8.4.
* pFUnit: Fixed conflicts/dependencies as suggested
* pFUnit: Version 4 no longer fetches from git
Checksummable files are fetched instead.
* pFUnit: Simplify major version check
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* pFUnit: Removed unnecessary patch for v4
The patch is still applied to v3.
* pFUnit: Modified MPI flag for v4
pFUnit v3 and v4 use different CMake flags to enable/disable MPI
support. Also added a conflict for v3 with MPI enabled using
gfortran 10, since newer gfortran is more finicky about datatypes.
* pFUnit: Rearranged mpi logic
* pFUnit: changed m4 to a build dependency
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* pFUnit: Added URL back
I did not realize it was needed by "spack versions" and
"spack checksum". Thanks @adamjstewart!
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
When the user explicitly sets ~fortran, mpich builds without fortran
support. This will make building C/C++ libraries using clang easier,
since clang does not offer a fortran compiler by default (yet).
Since the user has to disable Fortran support explicitly, this change
is not breaking.
