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Author SHA1 Message Date
Adam J. Stewart
ea3e1521fe Add CDO 1.9.7.1 (#11758) 2019-06-18 14:22:22 -04:00
Justin S
d82f8cd405 repeatmasker: perl and HMMER dependency fixes (#11660) 
repeatmasker depended on HMMER but was never actually configured to
use it. The package also had many shebangs pointing to random perl
locations, now patched to use Spack's perl installation.
 2019-06-18 11:11:00 -07:00
Hadrien G
e35355f040 ACTS package: add versions including 0.10.1 (#11606) 
* Also add version 0.10.0
* Add leading '0' to 0.9.x versions (e.g. 0.09.1) and 0.8.x versions
* Don't mention acts-framework, that package isn't in Spack yet
 2019-06-18 11:00:02 -07:00
Tamara Dahlgren
2a919c8851 Ensure proper gopath set for rclone (#11755) 
Fixes #11745

Set the GOPATH environment variable to the stage path to avoid
creation of a $HOME/go directory.
 2019-06-18 10:49:07 -07:00
Elizabeth Fischer
f886c7e59d Rename build.out to build.txt (#11749) 
Rename build.out to build.txt; makes it easier when people post log files to the Spack mailing list.
 2019-06-18 10:32:00 -07:00
Gabriel Rockefeller
003f670ef9 r3d: add version 2018-01-07 (#11770) 2019-06-18 09:36:49 -05:00
Adam J. Stewart
7c3137a203 Restrict libspatialite to proj@:5' (#11752) 2019-06-17 23:48:16 -04:00
Adam J. Stewart
7dc6b609d5 r-rgdal does not yet support PROJ.6 (#11766) 2019-06-17 23:47:52 -04:00
Adam J. Stewart
6422130709 Add PROJ.6 (#11730) 
* Add PROJ.6

* Add back comment about newer PROJ API
 2019-06-17 23:46:42 -04:00
Adam J. Stewart
1891734195 PROJ.6 not yet supported in SAGA-GIS (#11768) 2019-06-17 21:39:05 -04:00
Adam J. Stewart
a239ba33af py-cartopy does not yet support PROJ.6 (#11765) 2019-06-17 21:35:14 -04:00
Adam J. Stewart
a896a33b3b Specify which versions of PROJ work with MapServer (#11764) 2019-06-17 21:34:54 -04:00
Adam J. Stewart
349844a5fd Restrict magics to proj@:5 (#11763) 2019-06-17 21:33:25 -04:00
Adam J. Stewart
3018c64537 GRASS GIS does not yet support PROJ.6 (#11762) 2019-06-17 20:59:12 -04:00
Adam J. Stewart
b0cf2b5855 Add GEOS 3.7.2 (#11734) 2019-06-17 20:58:43 -04:00
Adam J. Stewart
de51be45b9 Add GDAL 3.0.0 (#11733) 
* Add GDAL 3.0.0

* Clarify PROJ version requirements
 2019-06-17 20:57:48 -04:00
Adam J. Stewart
17f20d0f32 Add py-fiona 1.8.6 (#11736) 
* Add py-fiona 1.8.6

* Remove commented code

* Python 3 will be required in the next release
 2019-06-17 20:54:58 -04:00
Adam J. Stewart
ee20b4826f Add libgeotiff 1.5.1 (#11731) 2019-06-17 20:46:46 -04:00
Manav Bhatia
0e34cc8a8e Libmesh updates (#11750) 
* Updates to libMesh: added v1.3.1 checksum, added vtk variant, bugfix for enabling petsc when slepc variant is specified

* fixed indentation issues identified by Travis CI

* - updates version number
- added master as a version
- added new variant options for perflog, metaphysicl and blocked storage
-- bug-fix for metis

* fixes for spack indentation errors

* renaming develop to master following review comment of PR.
 2019-06-17 19:38:19 -05:00
Adam J. Stewart
e23adbd4a9 Add py-pyproj 2.2.0 (#11735) 
* Add py-pyproj 2.2.0

* PR review requests

* Make Python requirements more explicit
 2019-06-17 20:23:40 -04:00
Adam J. Stewart
10d5008ef5 Restrict pism to proj@:4 (#11754) 
* Restrict pism to proj@:5

* PROJ.5 is not yet supported either :(
 2019-06-17 18:35:03 -04:00
Paul
93e1336de8 Added newer GoLang versions (#11756) 2019-06-17 17:23:09 -05:00
Adam J. Stewart
a558de117a Restrict ibmisc to proj@:4 (#11753) 
* Restrict ibmisc to proj@:5

* Restrict ibmisc to proj@:4
 2019-06-17 18:02:09 -04:00
Dan Lipsa
cdf4ba81e5 Remove version from py-mpi4py. (#11587) 2019-06-17 10:59:34 -04:00
Valentin Clement (バレンタイン クレメン)
f4d8b1ee60 Add version 1.2.2 and 1.2.3 to the package (#11748) 2019-06-17 16:03:26 +02:00
Dan Lipsa
83c7959580 Fix condition to enable mpi4py. (#11707) 
* Fix condition to enable mpi4py.

* flake8

* Catalyst as paraview for mpi4py.

* Catalyst needs numpy and mpi4py.

* Remove leftover enable python.
 2019-06-17 09:30:29 -04:00
Tamara Dahlgren
6e067a05c7 bugfix: use config fixture for stage tests (#11701) 
Some tests introduced in #11528 temporarily set the user's `config:build_stage`, which affected (or created) a config.yaml file in the user's `$HOME/.spack` directory that could leave entries behind if the tests fail.

This change ensures only temporary configuration files are used/affected by these tests.
 2019-06-17 11:38:34 +02:00
Tamara Dahlgren
a551e4329e docs: updates for stage.source_path (#11702) 2019-06-17 11:36:22 +02:00
Axel Huebl
b57ba6289c
openPMD-api: pybind11>=2.3.0 (#11744) 
Update the dependency on pybind11 to the latest version
(constexpr signature support for all C++11 compilers + fixes).
 2019-06-16 17:47:55 +02:00
Todd Gamblin
ce3a3507a4
cowsay: new package (#11743) 
- A program that generates ASCII pictures of a cow with a message.

- This is used by the ISC19 Singularity tutorial, so we should probably
  have it in Spack.
 2019-06-16 17:29:25 +02:00
Todd Gamblin
45c65a255a
docs: update tutorial page for ISC19 tutorial (#11742) 2019-06-16 12:35:12 +02:00
Adam J. Stewart
3192318f36 Add py-geopandas 0.5.0 (#11737) 2019-06-16 08:57:13 +02:00
Adam J. Stewart
4965e9be53 Add libtiff 4.0.10 (#11732) 2019-06-16 08:52:16 +02:00
Adam J. Stewart
830964c2fb Add nasm 2.14.02 (#11729) 2019-06-16 08:50:05 +02:00
Adam J. Stewart
e259932a1e Add openjpeg 2.3.1 (#11728) 2019-06-16 08:49:36 +02:00
Adam J. Stewart
76490dcdbc Add py-cligj 0.5.0 (#11727) 2019-06-16 08:48:42 +02:00
Adam J. Stewart
69a746e941 Add py-numpy 1.16.4 (#11726) 2019-06-16 08:47:38 +02:00
Adam J. Stewart
7bb44f4620 Add libjpeg-turbo 2.0.2 (#11725) 2019-06-16 08:47:14 +02:00
Adam J. Stewart
92ab46b9ed Update URL for older version of jackcess (#11724) 2019-06-16 08:46:13 +02:00
Adam J. Stewart
53a4ea43c8 Add HDF 4.2.14 (#11723) 2019-06-16 08:45:23 +02:00
Adam J. Stewart
ffb7e83e65 Add new package py-boto3 (#11722) 2019-06-16 08:44:41 +02:00
Adam J. Stewart
0de9d15a49 Add new package py-s3transfer (#11721) 2019-06-16 08:43:41 +02:00
Adam J. Stewart
9a400d13a9 Add new package py-botocore (#11720) 2019-06-16 08:43:06 +02:00
Adam J. Stewart
2a15ab42fe Add new package py-jmespath (#11719) 2019-06-16 08:42:35 +02:00
Adam J. Stewart
07a90b214b Add new package py-freezegun (#11718) 2019-06-16 08:41:27 +02:00
Adam J. Stewart
639cb17322 Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
Adam J. Stewart
954a36c499 Add py-aenum package (#11716) 2019-06-16 08:39:54 +02:00
Kevin Manalo
91ef079511 intel: add version 19.0.4 (#11741) 2019-06-15 23:19:58 -05:00
Adam J. Stewart
3bad45fedf
Updates to poppler to get pdf2svg working (#11681) 2019-06-15 17:32:39 -05:00
Glenn Johnson
6592b4d46d Fix latest HPL for MKL use (#11712) 
The 2.3 version of HPL needs LDFLAGS set for use of MKL libraries.
 2019-06-15 15:46:59 -05:00