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Author SHA1 Message Date
lingnanyuan
9653dc2aac r-qorts: Create new package. (#8744) 
* r-qorts: Create new package.

* Change dependency to java, change package name.

* Remove some join_path.
 2018-07-19 17:58:36 -05:00
sknigh
2a12c3bf07 Packaged iperf2 (#8765) 2018-07-19 17:55:06 -05:00
sknigh
3299d41ef9 Packaged iperf3 (#8762) 2018-07-19 16:02:55 -05:00
Matthias Diener
76b54a214e Py-lark-parser: new package (#8761) 2018-07-19 14:00:19 -05:00
Matthias Diener
9a9998dd2d pycparser: add version 2.18 (#8760) 2018-07-19 12:49:05 -05:00
Levi Baber
b0a0649d2c nwchem: add link type to python dep (#8759) 2018-07-19 12:03:40 -05:00
Christoph Junghans
e0d05d23a1 votca*: update dependencies (#8757) 2018-07-19 11:06:16 -05:00
Hadrien G
f227cf0545 New package: Verrou, a floating point error checker (#8738) 
* New package: Verrou, a floating point error checker

* Clean up usage of patch

* Account for future patches in version ranges

* Manual call to autogen is not needed anymore, but extra dependencies are needed

* Use trick from automake to evade shebang length limit

* Use a glob instead of an explicit file list

* Turns out conflict() does not do what I want...

* Suggestions from @citibeth reviews

- Use 'develop' convention for the master branch
- Prefer tarballs over git repositories
- Increase robustness against default configuration

* Drop a couple of older releases with a different patching procedure

* Playing coding style golf

* Various bug squashing

- Missed master -> develop substitution
- Turns out manually calling autogen.sh is needed after all
- Missed + in spec

* More style golfing to fit in 80 columns

* Remove unnecessary mention of the develop branch
 2018-07-19 09:57:53 -05:00
Todd Gamblin
d0a808944e style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
Todd Gamblin
20e4038a72 style: make core comply with pep8-naming 2018-07-19 00:41:36 -07:00
Todd Gamblin
264761ccb8 add py-pep8-naming package 2018-07-19 00:41:36 -07:00
Neil Flood
23d911d1a0 py-pytest: Added dependency on py-setuptools-scm, as well as py-setup… (#8750) 
* py-pytest: Added dependency on py-setuptools-scm, as well as py-setuptools, to prevent the build from silently installing its own copy of setuptools-scm

* py-pytest: Dependency on setuptools-scm only needs to be 'build'
 2018-07-18 22:52:44 -05:00
Neil Flood
186d3669c6 py-snuggs: Added depends_on py-parsing. The build uses setuptools, which would otherwise silently try to install pyparsing itself, presumably into the python home dir (obviously not ideal). (#8748) 2018-07-18 21:42:57 -05:00
Neil Flood
ab262ca916 py-pkgconfig: Made nose dependency type=build,test instead of just type=test, to prevent setuptools from silently installing its own copy of nose (#8749) 2018-07-18 21:42:04 -05:00
Cyrus Harrison
290125f893 openmpi: add c++ exceptions cfg option variant (#8743) 
* openmpi: add c++ exceptions cfg option variant

* address review comments
 2018-07-18 14:54:12 -05:00
Matthias Diener
111512ce7b Cmake: add version 3.12.0 (#8731) 2018-07-17 17:56:04 -05:00
Levi Baber
2ce6299c2b py-pyqi: new package (#8726) 
* py-pyqi: new package

* py-pyqi: cleanup
 2018-07-17 16:07:38 -05:00
Jon Rood
956faa50cc Confine the xlf_seacas.patch for trilinos to version 12.12.1 (#8725) 
* The xlf_seacas.patch fails on the latest trilinos develop branch so confine it up to version 12.12.1.

* Fixing likely mistak in seacas patch version range.
 2018-07-17 14:45:39 -05:00
Massimiliano Culpo
373b3d2444 Packages must be added to DB to be considered installed (#8038) 
Fixes #8036

Before this PR Package.installed was returning True if the spec prefix
existed, without checking the DB. This is wrong for external packages,
whose prefix exists before being registered into the DB. Now the property
checks for both the prefix and a DB entry.
 2018-07-17 11:43:30 -07:00
Christoph Junghans
25062d0bd4
lammps: added v20180629 (#8695) 2018-07-17 11:13:04 -06:00
Christoph Junghans
ab60e2258f fftw: version bump (#8723) 
* fftw: version bump

* fftw: add gcc-8 conflict for v3.3.7
 2018-07-17 11:11:19 -05:00
Lukasz
9f0f18dad6 fix link to blas libs (#8721) 2018-07-17 08:24:52 -05:00
James Dickson
0a80d94a46 Add fix for bug causing MACSio build failure when hdf5 or typhonio enabled (#8722) 
* Add fix for bug causing build failure when hdf5 enabled

* Added correct hdf5 dependency to typhonio
 2018-07-17 08:24:16 -05:00
Levi Baber
b12d5aecaa r: add memory profiling variant (#8717) 
* r: add memory profiling variant

* r: change memory_profiling to underscores
 2018-07-16 22:23:09 -05:00
健美猞猁
d006139e3c aspera-cli: a new package. (#8715) 
* aspera-cli: a new package.

* flak8.
 2018-07-16 13:53:23 -05:00
Matthias Diener
dfc1f70aa4 Charm: set default backend to netlrts (#8714) 
This allows building MPI applications on top of charm/AMPI without
to specify another backend.
 2018-07-15 16:41:36 -05:00
Matthias Diener
badf913fc4 Charm: more info about build targets (#8713) 
* Charm: more info about build targets

* fix whitespace
 2018-07-15 16:41:25 -05:00
Matthias Diener
b25187bfa6 Scotch: update package (#8711) 2018-07-15 15:54:28 -05:00
Matthias Diener
067c8466bd yasm: add develop version (#8712) 2018-07-15 15:54:13 -05:00
Matthias Diener
4df673e401 charm: provide MPI (#8647) 
* Charm: provide MPI
* add mpicc wrappers
* clarify MPI comment
 2018-07-15 08:33:57 -07:00
Jon Rood
5192a3d6d6 Fixing error in amrvis package. (#8710) 2018-07-14 18:19:26 -05:00
Matthias Diener
da5663a52a Py-opentuner: new package (#8707) 2018-07-14 13:51:58 -05:00
Jon Rood
e367d1fb3a Unset F90 and F90FLAGS in mvapich2 (#8698) 
* Unset F90 in mvapich2 when using intel compilers.

* Fixing typo.

* Unset F90 and F90FLAGS for mvapich2 at all times.

* Adding comment.
 2018-07-13 20:32:02 -05:00
Matthias Diener
4c5cbfeb29 py-fn: new package (#8705) 2018-07-13 20:31:39 -05:00
Levi Baber
44c999e2e1 mothur: mpi not used (#8706) 2018-07-13 20:31:25 -05:00
Matthias Diener
2cf9c7955c Scotch: fix compilation of 6.0.5a (#8704) 
Prevent this error:

metis_graph_part.c:301:7: error: non-void function 'METIS_PartGraphVKway' should return a value
      [-Wreturn-type]
 2018-07-13 15:51:04 -05:00
Sajid Ali
aec91d1cca update version for numexpr (#8702) 
* 	modified:   package.py

* 	deleted:    var/spack/repos/builtin/packages/py-numexpr/numexpr-2.6.5.tar.gz
 2018-07-13 15:50:21 -05:00
Sajid Ali
4c5e4cb960 Add py-backcall (#8701) 
* 	new file:   var/spack/repos/builtin/packages/py-backcall/package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py
 2018-07-13 10:59:02 -05:00
Christoph Junghans
d569a9c124
flang: add support for llvm-6 (#8073) 
* flang: add support for llvm-6

* flang: review changes

* pgmath: make flake8 happy
 2018-07-12 18:37:50 -06:00
Tim Law
2a27a37597 Add Git development versions for Typhon and BookLeaf_Cpp. (#8694) 2018-07-12 07:37:42 -05:00
Nicolas Richart
d8921ac323 First try on pytorch (#8649) 
* initial version of the package pyTorch (#171)

* adding version 0.4

* flake8 correction

* reordering version, removing run dependecies

* Changing depends_on type to default
 2018-07-12 07:30:59 -05:00
Levi Baber
1846bc5ed6 mitofates: more deps and a patch to make it functional (#8686) 
* mitofates: more deps and a patch to make it functional
 2018-07-12 10:23:22 +02:00
Adam J. Stewart
ecff47538e Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
Levi Baber
2561d1d656 transdecoder: needs perl-uri-escape (#8690) 2018-07-11 17:38:58 -05:00
Levi Baber
f29c1d9096 beast1: new version (#8691) 2018-07-11 17:07:20 -05:00
Levi Baber
feb4701ae3 mothur: new version (#8692) 2018-07-11 17:07:02 -05:00
Massimiliano Culpo
10e628a5a0
py-ply: added version 3.11 (#8383) 2018-07-11 22:21:55 +02:00
Massimiliano Culpo
e3a556cd2a Don't propagate version-specific URL overrides to newer versions (#8565) 
When a user specifies a URL for a specific version of a package, Spack originally
would use that URL for all newer versions of the package. This behavior has
proven to be generally more harmful than useful, so this PR removes the feature
such that a version-specific URL override affects only that version.
 2018-07-11 13:12:19 -07:00
Levi Baber
aa9bb06b89 py-cutadapt: needs py-setuptools at runtime (#8689) 2018-07-11 14:53:35 -05:00
Howard Pritchard
be9dfc2d73 openmpi: add 3.1.1 (#8684) 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2018-07-11 12:42:00 -05:00