Commit graph

8354 commits

Author SHA1 Message Date
Jean-Paul Pelteret
a4f594a68d Update valgrind to 3.12.0 (#2929) 2017-01-25 17:14:55 -08:00
serbanmaerean
5e2a96574b Add support for IBM threaded compilers: xl*_r (#2894)
* Add support for IBM threaded compilers, xl*_r

Added new compiler class, xl_r; added default flags to the compilers.yaml file.

* Add cppflags to the set of default flags to be added to the compilers stanza in compiler.yaml.

These flags are optional. Only defined flags will be listed in the compilers.yaml file.

* Fix scripting warnings revealed by flake8.

Updated __init__.py and xl_r.py to conform with flake8 rules.

* Add justification to the definition of the XL default compiler flags.
2017-01-25 16:26:17 -07:00
Massimiliano Culpo
fc866ae0fe build systems: simpler, clearer decorators: run_after, run_before (#2860)
* PackageMeta: `run_before` is an alias of `precondition`, `run_after` an alias of `sanity_check`

* PackageMeta: removed `precondition` and `sanity_check`

* PackageMeta: decorators are now free-standing

* package: modified/added docstrings. Fixed the semantics of `on_package_attributes`.

* package: added unit test assertion as side effects of install

* build_systems: factored build-time test running into base class

* r: updated decorators in package.py

* docs: updated decorator names
2017-01-25 08:57:01 -07:00
George Hartzell
90d47a3ead Add dependency on perl (#2909)
* Add dependency on perl

The build process uses perl and also needs `Test::More`.

Some distros, e.g. CentOS, break the core Perl distribution
into separate packages, so it's possible to "have perl" but
not have all the bits one needs to build OpenSSL.

We'll just install one of ours, which comes with all of its
factory parts included.

* Remove uninformative comment

>  # Also requires make

doesn't really add any value...
2017-01-24 14:07:13 -07:00
Adam J. Stewart
268347ccbf Add latest version of flex (#2914) 2017-01-24 14:06:56 -07:00
Adam J. Stewart
fae36b8489 Add latest version of NetCDF (#2915) 2017-01-24 14:06:42 -07:00
Adam J. Stewart
a04ac74c4c Add latest version of xz (#2916) 2017-01-24 14:01:10 -07:00
Jason Sarich
6e895c4ccc add static options for some libraries (#2876)
* add static options for some libraries

* make requested changes: add comments and use configure_args
2017-01-24 12:48:01 -07:00
Adam J. Stewart
7d3da2ebdc Grammar and broken link fixes in modules tutorial (#2912) 2017-01-24 10:25:44 -07:00
Jean-Paul Pelteret
416e52c150 Update SymEngine package (#2919)
Take advantage of new configuration options in the @develop branch
2017-01-24 10:00:27 -07:00
Mayeul d'Avezac
db7a786d1c Simplifying gbenchmark (#2892)
Also, it seems the cmake_args API has changed in spack
2017-01-23 16:12:31 -08:00
Adam J. Stewart
f8c7dab826 Convert xerces-c to AutotoolsPackage (#2907) 2017-01-23 15:50:34 -08:00
Adam J. Stewart
e317f2639c Add latest version of PnetCDF (#2906) 2017-01-23 15:30:01 -08:00
Adam J. Stewart
bcef90fe10 Add --without-x when building r~X (#2864)
* Add --without-x when building r~X

* Add latest version of R

* Run patch for latest version as well
2017-01-23 15:29:48 -08:00
Michael Kuhn
258dfc707d Export spack function so it works in subshells (#2908) 2017-01-23 15:29:25 -08:00
Denis Davydov
c76088906e oce & trilinos: force rpath on Sierra to avoid issues with load commands size (#2855)
* oce: force rpath on Sierra to avoid issues with load commands size

* trilinos: use rpath on Sierra to avoid load commands limit
2017-01-23 13:59:16 -08:00
Massimiliano Culpo
a8e1d78881 documentation: build-system phases + build-time tests (#2780)
* documentation: reworked packaging guide to add build-system phases

* documentation: improvements to AutotoolsPackage autodocs

* build_systems: updated autodocs

* run-tests: added a few information on how to run tests fixes #2606 fixes#2605

* documentation: fixed items brought up by @davydden

    * typos in docs
    * consistent use of 'build system' (i.e. removed 'build-system' from docs)
    * added a note on possible default implementations for build-time tests

* documentation: fixed items brought up by @citibeth

    * added note to explain the difference between build system and language used in a package
    * capitalized bullet items
    * added link to API docs

* documentation: fixed multiple cross-references after rebase

* documentation: fixed minor issues raised by @tgamblin

* documentation: added entry in table for the `PythonPackage` class

* docs: fixed issues brought up by @citybeth in the second review
2017-01-23 13:55:39 -08:00
Michael Kuhn
72f2f845e7 Update lz4 to 1.7.5 (#2878) 2017-01-23 10:26:21 -08:00
Jason Sarich
3686d0ceb3 have trilinos search for static libraries first when not using shared variant (#2896) 2017-01-23 10:24:21 -08:00
George Hartzell
162be154d2 Fix configure's zlib version check (#2901)
* Fix configure's zlib version check

R wants a version of zlib that is 1.2.5 or newer.

The version checking code just does a lexicographic comparison
of the first 5 characters of the string, so it seesthat the latest
zlib version, 1.2.10, as 1.2.1 and fails.

This patch changes the comparison to use zlibs' hex ZLIB_VERNUM
so that it does not suffer from this problem.

A version of this patch is wending it's way through the R comunity
community and will/should be included in a future release.

I tested the patch with the current R, 3.3.1.

* Tighten zlib dependency version (>= 1.2.5)

* Convert patch to level=1 format.
2017-01-23 10:20:54 -08:00
Michael Kuhn
7fd936735c Add zstd package (#2897) 2017-01-23 10:18:51 -08:00
Adam J. Stewart
dae353374e Simplify unit tests listed in Contribution Guide (#2904)
* Simplify unit tests listed in Contribution Guide

* Use long name for option flags
2017-01-23 09:48:49 -08:00
Gregory Lee
6bc7be9217 updated config file name for Python 3.6 (#2881) 2017-01-23 09:34:50 -08:00
Erik Schnetter
19699a7607 libevent: Properly declare OpenSSL dependency version bounds (#2888)
* libevent: Properly declare OpenSSL dependency version bounds

* libevent: Handle ~openssl variant correctly
2017-01-20 13:57:15 -08:00
John Wohlbier
3e8106955b For qt3, append to LD_LIBRARY_PATH, do not nuke it (#2862)
* libmonitor does not exist at
http://libmonitor.googlecode.com/svn/trunk/

Change location to HPCToolkit version at github. Specify the hash corresponding
to the 20130218 version.

* When xcb is version 1.11, patch the configure file so it doesn't trip on
pthread-stubs and xau.

* Add os.getcwd()/lib to LD_LIBRARY_PATH, instead of nuking
existing LD_LIBRARY_PATH.
2017-01-20 10:34:40 -08:00
Erik Schnetter
adac3ebbf9 cfitsio: Allow building as shared libraries (#2887)
* cfitsio: Allow building as shared libraries

- Allow building as shared libraries
- Also add optional bzip2 variant
- Also update to newest version

This requires the recent correction to “fix_darwin_install_name”.

* cfitsio: Simplify code, default to +shared
2017-01-20 10:28:07 -08:00
Erik Schnetter
4e390e6689 m4: Update version (#2872) 2017-01-20 10:23:53 -08:00
Erik Schnetter
56cdb1d1ab swig: Update version (#2871) 2017-01-20 10:23:23 -08:00
Erik Schnetter
cade0181fd Spack: Correct fix_darwin_install_name (#2886)
Previously, fix_darwin_install_name would only handle dependencies that have no path set, and it ignore dependencies that have the build directory as path baked in. Catch this, and replace it by the install directory.
2017-01-20 10:22:59 -08:00
Jason Sarich
bc37a1012c let pflotran depend on hdf 1.8.12 and above (#2875) 2017-01-20 10:18:58 -08:00
Michael Kuhn
042307d5f1 Update c-blosc to 1.11.1 (#2877) 2017-01-20 10:17:46 -08:00
Erik Schnetter
a0c4fe247f OpenSSL: Update to version 1.1.0c (#2885) 2017-01-20 10:12:09 -08:00
Denis Davydov
1223e43827 p4est: add 2.0 (#2890) 2017-01-20 10:11:11 -08:00
Denis Davydov
c350bd1216 dealii: fix config without mpi (#2856)
* dealii: fix config without mpi

* dealii: add check of variants
2017-01-19 11:24:09 -08:00
Quinn
f511f7b558 Adding some fixes to packages that use configure_args function without setting spec set or directly referencing it (#2868)
* Adding 'self.' to the spec call for configure_args

* Updating this to set spec to self.spec

* More updates to the configure_args spec calls

* Another spec issue

* Another spec issue.

* And another spec issue

* Switching cmor back to self.spec.
2017-01-19 06:26:39 -08:00
Adam J. Stewart
4dad5aab84 Add spack edit option for build systems (#2865) 2017-01-18 18:49:48 -08:00
Erik Schnetter
9b7001fda1 OpenMPI: Update auto-detection of Verbs library location (#2124) 2017-01-18 14:54:39 -08:00
Adam J. Stewart
02f92fc7f8 Massive conversion from Package to AutotoolsPackage (#2845)
* Massive conversion from Package to AutotoolsPackage

* Forgot to convert p4est to AutotoolsPackage

* Fix typo

* Fix broken link in docs
2017-01-18 10:34:09 -08:00
Denis Davydov
5812081b80 gmsh: add 2.16 (#2857) 2017-01-18 09:34:05 -08:00
Denis Davydov
ddfbb14ad9 octave: add 4.2.0; fix Blas/Lapack; use AutotoolsPackage (#2858)
* octave: add 4.2.0; fix Blas/Lapack; use AutotoolsPackage

* fix a bug
2017-01-18 09:33:45 -08:00
Adam J. Stewart
026e2d0fe6 Convert 3 more new packages to PythonPackage (#2841) 2017-01-18 08:51:38 -08:00
Erik Schnetter
6242aaef6c papi: Update to 5.5.1 (#2849) 2017-01-18 08:18:38 -08:00
Erik Schnetter
70042f9e7d hwloc: Update to 1.11.5 (#2851) 2017-01-18 08:18:08 -08:00
Erik Schnetter
b452a7619c curl: update to 7.52.1 (#2852) 2017-01-18 08:17:50 -08:00
Erik Schnetter
a23fcd2a93 cmake: Update to 3.7.2 (#2853) 2017-01-18 08:17:31 -08:00
Erik Schnetter
3bd0101fb9 jemalloc: Update to 4.4.0 (#2850) 2017-01-18 08:16:59 -08:00
Adam J. Stewart
f0f230d480 Allow spack create to detect packages that need to run autoreconf (#2848) 2017-01-17 17:42:45 -08:00
Denis Davydov
a040c8c743 oce: add 0.18 and fix patching (#2844)
* oce: add 0.18 and fix patching

* oce: simplify the patch
2017-01-17 14:40:07 -08:00
Jason Sarich
a1f7006400 check if node is already deleted (#2799)
* check if node is already deleted

* fix variable name
2017-01-17 14:23:32 -08:00
Denis Davydov
190a5b575c p4est: switch to AutotoolsPackage (#2839) 2017-01-17 11:05:34 -08:00