Commit graph

5100 commits

Author SHA1 Message Date
Todd Gamblin
08477f6624 Don't automatically spider remote list_urls before making stage. (#2263)
- This might be useful but we don't want to do it unconditionally.
2016-11-06 20:50:14 -08:00
becker33
49b1c0df2b Changed cflag matching to exact rather than subset. (#2227)
Not the desired eventual behavior, but cflag subset matching is not currently working for anonymous specs and this provides a temporary solution by restricting the feature until it is fixed.
2016-11-06 15:32:05 -08:00
Adam J. Stewart
ca5f713282 Further restrict versions of GCC patched (#2259) 2016-11-06 15:31:48 -08:00
George Hartzell
7f5d1953d4 Wordsmithing/minor-edits to module tutorial (#2256)
* Wordsmithing/minor-edits to module tutorial

A small set of wordsmithing, spell checking and minor edits to the fancy
new modules tutorial!

* Fix typo (sneaky z key...)

* Fix "S:" and "manual<" typos
2016-11-06 14:56:41 -08:00
Todd Gamblin
544b147370 Add detection for redhat enterprise server to distro.py (#2262) 2016-11-06 14:23:21 -08:00
Michael Kuron
6f2c05b888 Add PFFT parallel FFT package (#2255)
* Add PFFT parallel FFT package

* pfft: fix non-double precision
2016-11-05 12:19:19 -07:00
Massimiliano Culpo
6c1113769b mpich: updated package to build_systems (#2254)
* mpich: updated package to build_systems

* qa : flake8 issues
2016-11-05 11:23:57 -07:00
Massimiliano Culpo
1bef2b7e98 variable referenced before assignment (#2252) 2016-11-05 10:15:29 -07:00
Jeffrey Salmond
a260e7e860 Bugfix in concretize_compiler (#2196)
* fix bug in search for concrete compiler

* simplify implementation of concretize_compiler

* fix flake8 errors
2016-11-04 23:20:49 -07:00
Adam J. Stewart
6d1c32d46a Add STAR-CCM+ package (#2202)
* Add STAR-CCM+ package

* Cleanup commented out code
2016-11-04 23:16:20 -07:00
Sergey Kosukhin
6dfc536ecd Updated py-netcdf: added dependency on py-setuptools. (#2213) 2016-11-04 23:15:55 -07:00
George Hartzell
bcee2ca162 New texlive release, updating the digest to match (#2218)
* November 1 seems to have brought a new texlive release, updating the
digest to match.

Also switching the url from their automagic mirror to an explicit
site to avoid inconsistencies during their updates.

It seems like only yesterday (#2073) that I updated this....

* Add comment to url warning about mirror updates

Add a comment to the download info warning to use a
specific site rather than the mirror, to avoid wobbles
during their asynchronous updates.

* Fix typo ('to no' -> 'do not')
2016-11-04 23:14:48 -07:00
scheibelp
0940ee6015 Fixes #1520 (#1822)
Some packages which include resources fetched from source control
repositories terminated package installs because they failed to
archive; specifically, this included all SCM resources which identify
a specific state of the repo - for example a revision in svn or a
tag/revision in git. This is because the resource stage creation
logic did not choose an appropriate archive name for these kinds of
resources.
2016-11-04 20:14:56 -07:00
Adam J. Stewart
4e6d535058 Set Clang as the default compiler on macOS (#2225)
* Set OS-specific default compilers

* Fix flake8 warnings
2016-11-04 17:32:25 -07:00
Todd Gamblin
78154a63e8 Fix bug in distribution detection on unsupported platforms. 2016-11-04 16:49:19 -07:00
Jeffrey Salmond
9cd83a4efb Use code from the distro package to improve linux distro detection. (#1629)
* Use code from the `distro` package to improve linux distro detection.

Various issues [1] [2] with the platform.linux_distribution function led
to the function being deprecated in python 3.4. The pipi package distro
[3] contains compatible improved code that better tracks current methods
for identifying linux distributions (see, for example, [4],[5]).

[1]: https://bugs.python.org/issue20454
[2]: http://bugs.python.org/issue1322
[3]: https://pypi.python.org/pypi/distro
[4]: https://refspecs.linuxbase.org/LSB_3.0.0/LSB-PDA/LSB-PDA/lsbrelease.html
[5]: https://www.freedesktop.org/software/systemd/man/os-release.html

* fix (potential) unicode problems
2016-11-04 16:38:44 -07:00
Axel Huebl
c3d9dda0e5 libSplash: Add 1.6.0 Release (#2244)
* libSplash: Add 1.6.0 Release

Add the latest release of libSplash, version 1.6.0.

* Fix flake8 checks (another loop inversion issue)
2016-11-04 16:27:17 -07:00
Massimiliano Culpo
401b4cb137 module files tutorial : first complete draft (#2228)
* module files tutorial : first complete draft

- first complete draft for module files tutorial
- minor corrections to module file reference

* module file tutorial : first batch of corrections

- module avail spelled out fully
- typos from @adamjstewart
- rewording of a few sentences

* module file tutorial : first batch of corrections

- emphasized lines in yaml files

* module file tutorial : fixes according to @citibeth and @adamjstewart reviews

- used long format for command options
- reworded unclear sentence on tokes
- reworked table in reference manual to make it clearer

* module file tutorial : implemented corrections collected on site from @schlyfts

* module file tutorial : removed comment (@hartzell suggestion)
2016-11-04 12:55:43 -07:00
Gregory Lee
ee6eb508cb patch older config.guess for newer architectures (#2221) 2016-11-04 12:12:37 -07:00
Massimiliano Culpo
296a349d49 setup script for bash : fixes #2209 for sh setup (#2212) 2016-11-04 12:00:01 -07:00
Jeffrey Salmond
472ad39db3 updates to matio package (#2243)
* updates to matio package

- update to a AutoTools package
- add variants for hdf5 and zlib
- add latest version

* fix flake8 error
2016-11-04 11:56:47 -07:00
Jeffrey Salmond
f01b9797d7 opencoarrays package fixes and new version (#2239)
* fix and simplify opencoarrays package using new CMakePackge methods

* add new version
2016-11-04 11:50:25 -07:00
Todd Gamblin
2536029ea9 Better spack spec (#2238)
* Add options for hashes, tree depth, and YAML to `spack spec`.

- Can now display hashes with `spack spec`, like `spack find`.
  - Removed the old "ids" argument to `spack spec` (which
    printed numerical values)b

- Can output YAML spec from `spack spec` with `-y`

- Can control depth of DAG traversal with --cover=[nodes|edges|paths]

- Can print install status (installed, missing, not installed) with -I

* Don't use YAML aliases in specs.

- Force Spack's YAML dumper to ignore aliases.
- aliases cause non-canonical YAML to be used in DAG hash, and result in
  redundant hashes.
- add a test to ensure this behavior stays
2016-11-04 11:47:57 -07:00
Peter J. Scheibel
9a585e6c6a Make spec.format properties case-insensitive 2016-11-04 11:41:20 -07:00
Peter J. Scheibel
74b439b7f1 Support 'COMPILERVERSION' in spec format string 2016-11-04 11:41:20 -07:00
Jeffrey Salmond
a135a1245a tweaks to packages using CMakePackage (#2241)
* fix to trilinos package

* fix to dealii package

* fix to everytrace package

* fix to everytrace-example package

* changes suggested by @davydden
2016-11-04 10:57:53 -07:00
Denis Davydov
29f81b7775 trilinos: switch to CMakePackage and minor cleanup (#2226) 2016-11-04 02:00:03 -07:00
Denis Davydov
453331dba0 dealii: switch to CMakePackage and minor cleanup (#2237) 2016-11-04 01:46:39 -07:00
Denis Davydov
1eeef97c78 remove obsolete instructions on hacking clang+gfortran (#2217)
* remove obsolete instructions on hacking clang+gfortran

* add detailed instructions on how to setup Clang+gfortran on macOS
2016-11-03 08:06:33 -07:00
Massimiliano Culpo
36a4ca8b11 spack install: forward sys.stdin to child processes (#2158)
* spack install: forward sys.stdin to child processes fixes #2140

 - [ ] redirection process is spawned in __enter__ instead of __init__
 - [ ] sys.stdin is forwarded to child processes

* log: wrapped __init__ definition
2016-11-03 08:03:10 -07:00
Massimiliano Culpo
5b5894afba spack find: accepts anonymous specs as arguments fixes #2170 (#2188) 2016-11-03 00:45:15 -07:00
Pramod Kumbhar
b706da1109 Set TAU_MAKEFILE env variable (#2210)
* In order to use TAU module, we have to set TAU_MAKEFILE env variable.

* updated with suggestions from @citibeth
2016-11-02 15:05:47 -05:00
Todd Gamblin
b304387308 Fix style checker bug. (#2214)
* Fix style checker bug.

* spack flake8: print cwd-relative paths by default, with root-relative option.
2016-11-02 12:17:35 -05:00
Barry Smith
9455621ec2 Add support for gfortran to be used with clang (#2192)
1) list gfortran as a fc and f77 compiler that can work with clang
2) allow compatible gfortran to ./spack compiler find with clang by matching version numbers

This is based on the discussions in

https://github.com/LLNL/spack/issues/237
https://github.com/dealii/dealii/wiki/deal.II-in-Spack#mixing-gcc-and-clang-on-osx

This is not a long term solution but something to get us through the next months until the compiler
infrastructure is reworked to allow mixing and matching for C/C++ and Fortran compilers

Funded-by: IDEAS
Project: IDEAS/xSDK
Time: 1.5 hours
2016-11-02 11:17:13 -05:00
Sergey Kosukhin
8fb5cb2137 Added first version of the NCL package. (#2195)
Without GRIB2 and HDF-EOS support yet.
2016-11-02 10:20:57 -05:00
Peter Doak
1aa5d4875e Nmap package added (#2206)
* works to build newest version of nmap with gcc@5.3.0

* formatting

* clean up
2016-11-01 16:10:39 -07:00
scheibelp
45a4388164 Update references in debug command (#2204) 2016-11-01 13:55:13 -07:00
Sergey Kosukhin
62eba4774d Updated python package reflecting the changes in 9347f86 2016-11-01 16:15:34 +01:00
Todd Gamblin
edfe2297fd Improved package.py error handling. (#2187)
- Detailed debug information is now handed back to the parent process
  from builds, for *any* type of exception.

- previously this only worked for Spack ProcessErrors, but now it works
  for any type of error raised in a child.

- Spack will print an error message and source code context for build
  errors by default.

- It will print a stack trace when using `spack -d`, even when the error
  occurred in the child process.
2016-10-31 15:32:19 -07:00
Todd Gamblin
1b7f9e24f4 Add spack flake8 command. (#2186)
- Ported old run-flake8-tests qa script to `spack flake8` command.
- New command does not modify files in the source tree
- Copies files to a temp stage modifies them there, and runs tests.
- Updated docs and `run-flake8-tests` script to call `spack flake8`.
2016-10-31 11:40:20 -07:00
Todd Gamblin
4be703cde0 Allow common args to be written the same way regular args are. 2016-10-30 23:55:00 -07:00
Todd Gamblin
8f21332fec Bugfix: '::' only worked on top-level key in config.
- generalized and fixed to work with any key in YAML file
- simplified schema writing, as well
- add more unit tests for the config system
- Rename test/yaml.py to test/spack_yaml.py
  - Add test/yaml.pyc to ignored pyc files.
2016-10-30 23:55:00 -07:00
Todd Gamblin
d155156e32 Documentation for configuration 2016-10-30 23:55:00 -07:00
Todd Gamblin
b962622975 Add spack arch --platform option 2016-10-30 23:55:00 -07:00
Todd Gamblin
db89b534bd travis.yml: Only build master and develop on push 2016-10-30 23:55:00 -07:00
Todd Gamblin
58e76721b9 Make provider_index use spack yaml for cleaner output. 2016-10-30 23:55:00 -07:00
Todd Gamblin
da760a66de source_cache, misc_cache, verify_ssl, checksum, & dirty in config.yaml
- Added new preferences to config.yaml:
  - source_cache
  - misc_cache
  - verify_ssl
  - checksum
  - dirty
2016-10-30 23:55:00 -07:00
Todd Gamblin
22b14e0f23 Add module_roots to config.yaml 2016-10-30 23:55:00 -07:00
Todd Gamblin
0da639298c Move temp directory configuration to config.yaml
- Moved temp finding logic to spack.stage
- Updated stage tests
- Added tests for new path substaitution of $user, $spack, $tempdir
2016-10-30 23:55:00 -07:00
Todd Gamblin
9347f86939 Rename install.yaml -> config.yaml, install_area -> "store"
- Added a schema for config.yaml
- Moved install tree configuration to config.yaml
- Moved etc/spack/install.yaml to etc/spack/defaults/config.yaml
- renamed install_area to "store", to use a term in common with guix/nix.
  - in `config.yaml` file, it's called the `install_tree` to be more
    intuitive to users.
  - `install_tree` might've worked in the code, but `install_tree` is
    already a global function in the spack namespace, from
    llnl.util.filesystem.
2016-10-30 23:55:00 -07:00