Commit graph

3459 commits

Author SHA1 Message Date
Tamara Dahlgren
93a44c822c tests: cleanup config:build_stage handling (fixes #12651, #12798) 2019-10-10 16:50:05 -07:00
Tamara Dahlgren
87cdfa2c25 Add support for nested "overrides" scopes. 2019-10-10 16:50:05 -07:00
Massimiliano Culpo
b07460ab5f Added NEON to the list of features required for the aarch64 family
Both floating-point and NEON are required in all standard ARMv8
implementations. Theoretically though specialized markets can support
no NEON or floating-point at all. Source:

https://developer.arm.com/docs/den0024/latest/aarch64-floating-point-and-neon

On the other hand the base procedure call standard for Aarch64
"assumes the availability of the vector registers for passing
floating-point and SIMD arguments". Further "the Arm 64-bit
architecture defines two mandatory register banks: a general-purpose
register bank which can be used for scalar integer processing and
pointer arithmetic; and a SIMD and Floating-Point register bank".
Source:

https://developer.arm.com/docs/ihi0055/latest/procedure-call-standard-for-the-arm-64-bit-architecture

This makes customization of Aarch64 with no NEON instruction set
available so unlikely that we can consider them a feature of the
generic family.
2019-10-10 16:24:36 -07:00
Massimiliano Culpo
77444dff10 ArchSpec: fix constraint satisfaction for targets
fixes #13111

Due to a missing case we were treating a single target that was not
equal to the one we were comparing to as a range open on the right.
2019-10-10 16:22:38 -07:00
Patrick Gartung
5b879459c7
Buildcache: pass string.encode('utf-8') for old_dir and new_dir to replace_prefix_bin. (#13114)
This should fix a Python3 error from concatenating strings and bytes.
2019-10-09 20:36:47 -05:00
Massimiliano Culpo
acbb2af528 "No Spack mirror configured": demoted the warning to a debug message (#13082)
fixes #12010
2019-10-09 07:13:37 -05:00
Adam J. Stewart
72d8febc4e Add macOS Catalina support (#13070) 2019-10-07 23:59:33 -07:00
Massimiliano Culpo
9faee51e22 Spack environments can concretize specs together (#11372)
This PR adds a 'concretize' entry to an environment's spec.yaml file
which controls how user specs are concretized. By default it is
set to 'separately' which means that each spec added by the user is
concretized separately (the behavior of environments before this PR).
If set to 'together', the environment will concretize all of the
added user specs together; this means that all specs and their
dependencies will be consistent with each other (for example, a
user could develop code linked against the set of libraries in the
environment without conflicts).

If the environment was previously concretized, this will re-concretize
all specs, in which case previously-installed specs may no longer be
used by the environment (in this sense, adding a new spec to an
environment with 'concretize: together' can be significantly more
expensive).

The 'concretize: together' setting is not compatible with Spec
matrices; this PR adds a check to look for multiple instances of the
same package added to the environment and fails early when
'concretize: together' is set (to avoid confusing messages about
conflicts later on).
2019-10-07 09:53:23 -07:00
Pariksheet Nanda
19e6f55647 doc: fix #12245 non-functional libdwarf dependency (#12515)
Applying accepted fix from spack/spack.io#4
2019-10-05 21:07:18 -05:00
Michael Kuhn
bdb92f2d91 Consistently support pkg-config files in share subdirectory (#12838)
While the build environment already takes share/pkgconfig into account,
the generated module files etc. only consider lib/pkgconfig and
lib64/pkgconfig.
2019-10-05 21:03:35 -05:00
Massimiliano Culpo
6a1021b81c bugfix: issue with custom dotkit root in config.yaml (#13046)
When removing support for dotkit in #11986 the code trying to set the
paths of the various module files was not updated to skip it. This
results in a failure because of a key error after the deprecation
warning is displayed to user.

This commit fixes the issue and adds a unit test for regression.
Note that code for Spack chains has been updated accordingly but
no unit test has been added for that case.
2019-10-04 23:42:21 -07:00
Adam J. Stewart
24f8d1042b
Update compilers.yaml location in Getting Started docs (#13029) 2019-10-03 10:31:32 -05:00
Massimiliano Culpo
78577c0a90
Generic x86_64 code compiled with GCC uses non deprecated mtune flags (#13022)
fixes #12928
2019-10-03 10:31:03 +02:00
Massimiliano Culpo
76b9c56110 Remove support for generating dotkit files (#11986)
Dotkit is being used only at a few sites and has been deprecated on new
machines. This commit removes all the code that provide support for the
generation of dotkit module files.

A new validator named "deprecatedProperties" has been added to the
jsonschema validators. It permits to prompt a warning message or exit
with an error if a property that has been marked as deprecated is
encountered.

* Removed references to dotkit in the docs
* Removed references to dotkit in setup-env-test.sh
* Added a unit test for the 'deprecatedProperties' schema validator
2019-10-02 22:15:01 -07:00
t-karatsu
a3a0e1cd2e fujitsu compiler: Add 'required_libs'. (#13014) 2019-10-02 11:55:08 -05:00
Patrick Gartung
2a739ed03e
Replace expensive store.reindex() call with db.add() call. (#13021) 2019-10-02 11:30:28 -05:00
Patrick Gartung
9dfec4a57c
'spack buildcache list' should show all buildaches available. (#13002)
* binary cache: show all packages for compatible differing targets

* Don't restrict spack buildcache list to arch or os

* Fix from merge conflict
2019-10-01 22:54:22 -05:00
Massimiliano Culpo
1b18ec90ab Add all compatible system types directory to module paths
fixes #12915
closes #12916

Since Spack has support for specific targets it might happen that
software is built for targets that are not exactly the host because
it was either an explicit user request or the compiler being used is
too old to support the host.

Modules for different targets are written into different directories
and by default Spack was adding to MODULEPATH only the directory
corresponding to the current host. This PR modifies this behavior to
add all the directories that are **compatible** with the current host.
2019-10-01 19:18:27 -07:00
Greg Becker
b92977492d binary cache: show all packages for compatible differing targets (#12943) 2019-10-01 17:03:28 -05:00
Jeffrey Salmond
76178f31ca When removing a file from a view, don't fail if it doesn't exist (#12960)
Sometimes when remove_file is called on a link, that link is missing
(perhaps ctrl-C happened halfway through a previous action). As
removing a non-existent file is no problem, this patch changes the
behavior so Spack continues rather than stopping with an error.

Currently you would see

  ValueError: /path/to/dir is not a link tree!

and now it continues with a warning.
2019-10-01 10:29:10 -07:00
Todd Gamblin
a12c032509 make license check slightly more lenient
bin/spack now needs to have a "-*- python -*-" line after the shebang, so
that emacs will interpret it as a python file instead of as a shell
script.  Add one line to the license check limit to accommodate this.
2019-09-29 09:32:04 -07:00
Massimiliano Culpo
9117dfd118 Add all the 'generic' architectures that are mentioned in recipes (#12958)
LLVM, mesa and other packages check for these generic
microarchitectures. One solution is to let Spack know they exist.
2019-09-28 21:47:05 -07:00
Glenn P Johnson
08a6577861 Fix perl build when using Build.PL
This fixes #12852 where perl builds that use Build.PL will fail when the
shebang of the Build script produced from the configure step is too
long.
2019-09-26 13:38:13 -07:00
Patrick Gartung
7dae058f91
Relocate mach-o binaries using macholib on linux. (#12946)
Changes deps and rpaths for bins and libs, changes id for libs.
2019-09-26 13:04:58 -05:00
eugeneswalker
950338aa92 add --no-deps opt to buildcache-create (#12956) 2019-09-26 12:23:59 -05:00
Patrick Gartung
321e956fa9
External: add macholib and altgraph needed to relocate Mach-o binaries on Linux (#12909) 2019-09-26 11:48:22 -05:00
Adam J. Stewart
065cbe89fe Fix "specific target" detection in Python 3 (#12906)
The output of subprocess.check_output is a byte string in Python 3. This causes dictionary lookup to fail later on.

A try-except around this function prevented this error from being noticed. Removed this so that more errors can propagate out.
2019-09-24 09:47:54 -07:00
Patrick Gartung
6dd9dbc071
Change get_patchelf to immediately return patchelf path if found (#12925) 2019-09-24 08:38:19 -05:00
t-karatsu
9aca0a17f4 Fujitsu compilers: added 'verbose_flag' method (#12922) 2019-09-24 11:17:29 +02:00
Todd Gamblin
18d63a239f bugfix: use string keys to set preferred targets (#12921)
Preferred targets were failing because we were looking them up by
Microarchitecture object, not by string.

- [x] Add a call to `str()` to fix target lookup.
- [x] Add a test to exercise this part of concretization.
- [x] Add documentation for setting `target` in `packages.yaml`
2019-09-24 10:18:48 +02:00
Massimiliano Culpo
2468ccee58 AMD: fix architecture hierarchy (zen) (#12913)
* microarchitectures: zen starts from x86_64, not from excavator
* Unit tests: fixed a test that is wrong with the new modeling
* microarchitectures: fixed features and inheritance for 15h family

bulldozer doesn't inherit from barcelona (10h) + added xop, lwp and tbm
instruction sets to the 15h family (it distinguish the family from 17h)
2019-09-23 21:54:13 -07:00
Adam J. Stewart
d6555f64b0
Fix detection of Apple Clang 11.0.0 (#12912) 2019-09-23 17:25:33 -05:00
Tamara Dahlgren
08e77e1b41
tests: more template creation tests (#12882)
Addresses #12804 

This PR adds the creation of the remaining (16) templates to ensure we can create them with expected content. The goal is to facilitate catching during testing.
2019-09-23 10:18:50 -07:00
Todd Gamblin
b4e148b562 externals: add note to jsonschema about modifications (#12895) 2019-09-22 09:43:57 -05:00
Todd Gamblin
7a1dd517b8 externals: avoid importing requests in jsonschema
Spack doesn't need `requests`, and neither does `jsonschema`, but
`jsonschema` tries to import it, and it'll succeed if `requests` is on
your machine (which is likely, given how popular it is).  This commit
removes the import to improve Spack's startup time a bit.

On a mac with SSD, the import of requests is ~28% of Spack's startup time
when run as `spack --print-shell-vars sh,modules` (.069 / .25 seconds),
which is what `setup-env.sh` runs.

On a Linux cluster where Python is mounted from NFS, this reduces
`setup-env.sh` source time from ~1s to .75s.

Note: This issue will be eliminated if we upgrade to a newer `jsonschema`
(we'd need to drop Python 2.6 for that).  See
https://github.com/Julian/jsonschema/pull/388.
2019-09-21 17:57:36 -07:00
Scott Wittenburg
db4d52d923 Fix how 'gpg --list-secret-keys ...' output is parsed 2019-09-20 11:33:58 -06:00
Gregory Becker
c43f105359 targets: add mic_knl target to microarchitectures.json
- This is needed to support Cray machines -- we need an architecture
  mic_knl > x86_64

- We used Cray's naming scheme for this target to make it work seamlessly
  with the module-based detection sccheme on Cray.  mic_knl is pretty
  much dead, so this will be the last succh target.  We will need to work
  wtih Cray and other vendors in the future.
2019-09-20 00:51:37 -07:00
Massimiliano Culpo
7daf860991 targets: adjust packages to use new specific targets semantics
Seamless translation from 'target=<generic>' to either
- target.family == <generic> (in methods)
- 'target=<generic>:' (in directives)

Also updated docs to show ranges in directives.
2019-09-20 00:51:37 -07:00
Massimiliano Culpo
3c4322bf1a targets: Spack targets can now be fine-grained microarchitectures
Spack can now:

- label ppc64, ppc64le, x86_64, etc. builds with specific
  microarchitecture-specific names, like 'haswell', 'skylake' or
  'icelake'.

- detect the host architecture of a machine from /proc/cpuinfo or similar
  tools.

- Understand which microarchitectures are compatible with which (for
  binary reuse)

- Understand which compiler flags are needed (for GCC, so far) to build
  binaries for particular microarchitectures.

All of this is managed through a JSON file (microarchitectures.json) that
contains detailed auto-detection, compiler flag, and compatibility
information for specific microarchitecture targets.  The `llnl.util.cpu`
module implements a library that allows detection and comparison of
microarchitectures based on the data in this file.

The `target` part of Spack specs is now essentially a Microarchitecture
object, and Specs' targets can be compared for compatibility as well.
This allows us to label optimized binary packages at a granularity that
enables them to be reused on compatible machines.  Previously, we only
knew that a package was built for x86_64, NOT which x86_64 machines it
was usable on.

Currently this feature supports Intel, Power, and AMD chips. Support for
ARM is forthcoming.

Specifics:

- Add microarchitectures.json with descriptions of architectures

- Relaxed semantic of compiler's "target" attribute.  Before this change
  the semantic to check if a compiler could be viable for a given target
  was exact match. This made sense as the finest granularity of targets
  was architecture families.  As now we can target micro-architectures,
  this commit changes the semantic by interpreting as the architecture
  family what is stored in the compiler's "target" attribute. A compiler
  is then a viable choice if the target being concretized belongs to the
  same family. Similarly when a new compiler is detected the architecture
  family is stored in the "target" attribute.

- Make Spack's `cc` compiler wrapper inject target-specific flags on the
  command line

- Architecture concretization updated to use the same algorithm as
  compiler concretization

- Micro-architecture features, vendor, generation etc. are included in
  the package hash.  Generic architectures, such as x86_64 or ppc64, are
  still dumped using the name only.

- If the compiler for a target is not supported exit with an intelligible
  error message. If the compiler support is unknown don't try to use
  optimization flags.

- Support and define feature aliases (e.g., sse3 -> ssse3) in
  microarchitectures.json and on Microarchitecture objects. Feature
  aliases are defined in targets.json and map a name (the "alias") to a
  list of rules that must be met for the test to be successful. The rules
  that are available can be extended later using a decorator.

- Implement subset semantics for comparing microarchitectures (treat
  microarchitectures as a partial order, i.e. (a < b), (a == b) and (b <
  a) can all be false.

- Implement logic to automatically demote the default target if the
  compiler being used is too old to optimize for it. Updated docs to make
  this behavior explicit.  This avoids surprising the user if the default
  compiler is older than the host architecture.

This commit adds unit tests to verify the semantics of target ranges and
target lists in constraints. The implementation to allow target ranges
and lists is minimal and doesn't add any new type.  A more careful
refactor that takes into account the type system might be due later.

Co-authored-by: Gregory Becker <becker33.llnl.gov>
2019-09-20 00:51:37 -07:00
Gregory Becker
dfabf5d6b1 targets: first pass at target detection for linux
Add llnl.util.cpu_name, with initial support for detecting different
microarchitectures on Linux.  This also adds preliminary changes for
compiler support and variants to control the optimizatoin levels by
target.

This does not yet include translations of targets to particular
compilers; that is left to another PR.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2019-09-20 00:51:37 -07:00
Patrick Gartung
a940ff34d7
Put back the use of otool and install_name_tool when running on macOS. Only use machotools on linux. (#12867)
Move verbose messages to debug level

get_patchelf should return None for test platform as well because create_buildinfo invokes patchelf to get rpaths.
2019-09-19 17:16:26 -05:00
Patrick Gartung
7c0c31361a
Update buildcache creation and installation to allow mach-o binary relocation using py-machotools on linux or macos. (#12858)
Update py-machotools dependencies and versions.
2019-09-18 07:24:45 -05:00
Scott Wittenburg
56894b8805 Support yaml paths anywhere specs are handled on CLI (#12561)
Update command-line (CLI) parsing to understand references to yaml
files that store Spack specs. Where a file reference is encountered,
the full Spec in the file will be read in. A file reference may
appear anywhere that a spec could appear before. For example, if you
write "spack spec -y openmpi > openmpi.yaml" you may then install the
spec using the yaml file by running "spack install ./openmpi.yaml";
you can also refer to dependencies in this way (e.g.
"spack install foo^./openmpi.yaml").

There are two requirements for file references:

* A file path entered on the CLI must include a "/" even if the file
  exists in your current working directory. For example, if you
  create an openmpi.yaml file as above and run
  "spack install openmpi.yaml" from the same directory, it will
  report an error.
* A file path entered on the CLI must end with ".yaml"

This commit adds error messages to clearly inform the user of both
violations.
2019-09-17 19:45:37 -07:00
Peter Scheibel
141a1648e6 implicit rpaths filtering (#12789)
* implicit_rpaths are now removed from compilers.yaml config and are always instantiated dynamically, this occurs one time in the build_environment module

* per-compiler list required libraries (e.g. libstdc++, libgfortran) and whitelist directories from rpaths including those libraries. Remove non-whitelisted implicit rpaths. Some libraries default for all compilers.

* reintroduce 'implicit_rpaths' as a config variable that can be used to disable Spack insertion of compiler RPATHs generated at build time.
2019-09-17 17:45:21 -05:00
Adam J. Stewart
21e4b1752e Fix generic body during package creation (#12804)
Fixes incomplete change in #11981 

Use the proper variable (`body_def`) during package creation for package subclasses.
2019-09-17 09:37:46 -07:00
Adam J. Stewart
dce45aa299 Allow build to proceed with failed compiler lib detection (#12756)
Fixes #12732
Fixes #12767

c22a145 added automatic detection and RPATHing of compiler libraries
to Spack builds. However, in cases where the parsing/detection logic
fails this was terminating the build. This makes the compiler library
detection "best-effort" and reports an issue when the detection fails
rather than terminating the build.
2019-09-16 19:09:28 -07:00
Adam J. Stewart
5eac8130b3 Quote shell variable values (#12759)
This updates logic which sets shell variables to quote the values,
which is necessary when the value contains a space (e.g. PATH).
2019-09-16 11:10:36 -07:00
Scott Wittenburg
1050fa5546 Fixes identified in ecp facilities hackathon fixes:
- improve mirror git repo management
- minio s3 implementation needs endpoint_url
- Remove image key from rebuild-index job
- Remove image, rely on tags instead
2019-09-13 22:57:15 -07:00
Scott Wittenburg
6d745a56fd Implement an optional compiler bootstrapping phase 2019-09-13 22:57:15 -07:00
Scott Wittenburg
5323a5cff9 Remove CombinatorialSpecSet in favor of environments + stacks 2019-09-13 22:57:15 -07:00