Commit graph

26664 commits

Author SHA1 Message Date
Sebastian Ehlert
3db96aa892
simple-dftd3: add package and dependencies (#31046)
- add simple-dftd3 (version 0.6.0, 0.5.1)
- add mctc-lib (version 0.3.0)
- add toml-f (version 0.2.3)
- update dftd4 (version 3.4.0, use mctc-lib as actual dependency)
- update json-fortran (version 8.*, make static library PIC)
2022-06-14 15:05:01 +02:00
Jim Galarowicz
c7628d768a
survey: add v1.0.5 (#31053) 2022-06-14 14:56:51 +02:00
haralmha
e1ad926189
vectorclass-version2: move files to include folder (#31105) 2022-06-14 14:54:16 +02:00
dlkuehn
8705735c74
gemma: add new package. (#31078)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-06-14 12:53:14 +00:00
Hadrien G
d82fa045d5
acts: add v19.2 (#31108) 2022-06-14 12:45:03 +00:00
Richard Berger
c72d51cb3a
legion: add HIP support (#31080) 2022-06-14 13:49:33 +02:00
Qian Jianhua
d76f184430
hybrid-lambda: fix build tests (#30214) 2022-06-14 13:46:23 +02:00
Seth R. Johnson
19ea24d2bd
hdf5: add conflict for broken @1.8.22+fortran+mpi (#31111) 2022-06-14 13:42:48 +02:00
Bernhard Kaindl
83efea32f4
openssh: enable authentication via Kerberos through GSSAPI (#31086)
Add variant +gssapi to enable authentication via Kerberos through GSSAPI

When openssh is installed at sites using Kerberos, openssh needs to auth
via Kerberos through GSSAPI in order to work in such environments.
2022-06-14 13:41:32 +02:00
Mark Olesen
bc577f2dee
openfoam: update v2112 to latest patch (#31113)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2022-06-13 21:21:42 -06:00
Jean Luca Bez
04529fbe80
Update HDF5 VOL async (#31011)
* Update h5bench maintainers and versions

* Include version 1.1 for h5bench

* Correct release hash and set default version

* Update .tar.gz version

* Update HDF5 VOL async version and environment variable syntax
2022-06-13 21:58:16 -05:00
Wouter Deconinck
cdfbe2c25d
root: new version 6.26.04 (#31116)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-13 17:45:37 -07:00
Manuela Kuhn
8305742d75
exempi: add 2.6.1 and fix boost dependency (#31120) 2022-06-13 15:20:31 -07:00
Greg Sjaardema
e0137b1566
SEACAS: Clean up, add new versions (#31119) 2022-06-13 16:22:43 -04:00
iarspider
be95699a55
Add checksum for pacparser 1.4.0 (#31110) 2022-06-13 14:17:33 -06:00
Massimiliano Culpo
7d96a0aa5a
Pin setuptools version in Github Action Workflows (#31118)
fixes #31109
2022-06-13 21:09:16 +02:00
Qian Jianhua
874b713edf
netpbm: run custom test command (#31072)
* netpbm: run custom test command

* fix styles

* change method name
2022-06-13 11:26:54 -07:00
iarspider
3c0a98c5ab
sloccount: add build-time dependency on flex (#31106) 2022-06-13 09:39:44 -07:00
Elsa Gonsiorowski, PhD
998bf90b35
SCR release v3.0, including components (#29924) 2022-06-13 18:17:17 +02:00
liuyangzhuan
2ca32fbc8c
Remove filter operation for superlu-dist to avoid permission issues on read-only systems (#30970)
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize

* adding gptune package

* minor fix for macos spack test

* update patch for py-scikit-optimize; update test files for gptune

* fixing gptune package style error

* fixing unit tests

* a few changes reviewed in the PR

* improved gptune package.py with a few newly added/improved dependencies

* fixed a few style errors

* minor fix on package name py-pyro4

* fixing more style errors

* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* resolved a few issues in the PR

* fixing file permissions

* a few minor changes

* style correction

* minor correction to jq package file

* Update var/spack/repos/builtin/packages/py-pyro4/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixing a few issues in the PR

* adding py-selectors34 required by py-pyro4

* improved the superlu-dist package

* improved the superlu-dist package

* moree changes to gptune and py-selectors34 based on the PR

* Update var/spack/repos/builtin/packages/py-selectors34/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi

* fixing style issue of gptune

* changing file mode

* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant

* fixing style error

* corrected pddrive_spawn path in gptune test; enforcing gcc>7

* fixing style error

* setting environment variables when loading gptune

* removing debug print in hypre/package.py

* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR

* changing site_packages_dir to python_platlib

* not using python3.9 for py-gpy, which causes due to dropped support of tp_print

* more replacement of site_packages_dir

* fixing a few dependencies in gptune; added a gptune version

* adding url for gptune

* minor correction of gptune

* updating versions in butterflypack

* added a version for openturns

* added a url for openturns

* minor fix for openturns

* Update var/spack/repos/builtin/packages/openturns/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* added version2.1.1 for butterflypack

* fixing a tag in butterflypack

* minor fix for superlu-dist

* removed file filter for superlu-dist

* Update var/spack/repos/builtin/packages/superlu-dist/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* superlu-dist: add version detection for the testing; removing unused lines

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-13 08:48:55 -07:00
Jordan Galby
e50d08ce48
Fix spack style arbitrary git rev as base (#31019)
Allow `spack style -b @` or `spack style -b origin/develop` to work as
expected.

Regression since spack 0.17 #25085
2022-06-13 15:22:35 +00:00
Sergey Kosukhin
696d81513d
nvhpc: conflict with all compilers except for gcc (#31073) 2022-06-13 16:47:28 +02:00
Mark Grondona
b38afa7528
Add flux-core v0.39.0 and v0.40.0 and flux-sched v0.23.0 (#31061) 2022-06-13 16:15:25 +02:00
Mikael Simberg
0f2786c9d3
Fix tracy-client package (#31076) 2022-06-13 16:11:00 +02:00
Carson Woods
f72c2ab583
Fix download URL for pcre package (#31077) 2022-06-13 16:05:25 +02:00
Adam J. Stewart
f6e6403fd1
Fix packages that will break with PIL 10 (#31071) 2022-06-13 16:04:13 +02:00
Simon Pintarelli
5550271ead
atompaw: add v4.2.0.1 (#31087)
apply ifort patch including v4.2.0.0, but not for 4.2.0.1 anymore
2022-06-13 15:15:59 +02:00
Jack Morrison
a1b19345b1
opa-psm2: add v11.2.228 (#31089) 2022-06-13 14:58:25 +02:00
Erik Schnetter
e2aeb06c91
adios2: add v2.8.1 (#31090) 2022-06-13 14:55:09 +02:00
Brice Videau
14ae0e0d94
py-py-spy: fix dependency on libunwind (#31013)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-06-13 14:16:26 +02:00
Seth R. Johnson
516587a1da
py-breathe: new version 4.33.1 and fix dependencies (#31098)
* py-breathe: new version 4.33.1 and fix dependencies

* remove unused dependencies
2022-06-12 18:06:39 -05:00
Paul R. C. Kent
dc36fd87bb
Addllvmv1405 (#31099) 2022-06-12 11:24:31 -07:00
marcosmazz
06b5141d01
Limit Jasper version for WPS (#31088)
* Limit Jasper version for WPS

Jasper@3: changed API and does not support interfaces used by WPS.
This prevented ungrib.exe build and failed silently.
2022-06-12 19:02:07 +02:00
Seth R. Johnson
27610838dd
py-sphinxcontrib-bibtex: new version 2.4.2 (#31097) 2022-06-12 09:24:46 -07:00
Danny McClanahan
0c7fd9bd8c
fix doubly shell quoting args to spack spec (#29282)
* add test to verify fix works
* fix spec cflags/variants parsing test (breaking change)
* fix `spack spec` arg quoting issue
* add error report for deprecated cflags coalescing
* use .group(n) vs subscript regex group extraction for 3.5 compat
* add random test for untested functionality to pass codecov
* fix new test failure since rebase
2022-06-11 12:35:46 -07:00
Todd Gamblin
bf2b30a5f5
bugfix: preserve dict order for Spec.dag_hash() in Python 2 (#31092)
Fix a bug introduced in #21720. `spack_json.dump()` calls `_strify()` on dictionaries to
convert `unicode` to `str`, but it constructs `dict` objects instead of
`collections.OrderedDict` objects, so in Python 2 (or earlier versions of 3) it can
scramble dictionary order.

This can cause hashes to differ between Python 2 and Python 3, or between Python 3.7
and earlier Python 3's.

- [x] use `OrderedDict` in `_strify`
- [x] add a regression test
2022-06-10 20:32:35 -07:00
Asher Mancinelli
f42680b785
ripgrep: remove need for llvm (#31062) 2022-06-10 11:45:53 -07:00
Sergey Kosukhin
a2afd5b82f
clingo: fix string formatting in error messages (#31084) 2022-06-10 16:24:27 +00:00
Cyrus Harrison
11f1b371f7
babelflow: fix conditional constraint in "when" decorator (#31057) 2022-06-10 18:07:22 +02:00
Valentin Churavy
cfc46504ac
enzyme: new version 0.0.32 (#31081)
Add LLDEnzyme to libs list
2022-06-10 11:48:35 +02:00
dependabot[bot]
163251aa65
build(deps): bump actions/setup-python from 3.1.2 to 4 (#31059)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3.1.2 to 4.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](98f2ad02fd...d09bd5e600)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-06-10 11:03:36 +02:00
eugeneswalker
6ab9f3a290
exago@1.4.1: : needs py-pytest (#31060) 2022-06-09 16:55:04 -07:00
Gregory Lee
45043bcdf5
py-xdot requires explicit dependency on harfbuzz (#30968) 2022-06-09 13:53:32 -06:00
Adam J. Stewart
7642fa3d99
py-kornia: add v0.6.5 (#31067) 2022-06-09 12:13:51 -07:00
Adam J. Stewart
1689f7fcbe
py-pillow: add v9.1.1 (#31068) 2022-06-09 12:12:02 -07:00
Adam J. Stewart
4f67afeb5f
py-pytorch-lightning: add v1.6.4 (#31069) 2022-06-09 12:09:05 -07:00
Adam J. Stewart
9d8ecffed0
py-timm: add v0.5.4 (#31070) 2022-06-09 12:06:58 -07:00
Cyrus Harrison
1ada7ea809
add fix for implicit includes with newer vers of gcc (#31056) 2022-06-09 09:40:08 -07:00
Martin Lang
4a8db00691
nfft, pnfft: fix detection of fftw variants (precision) (#30935)
* nfft, pnfft: fix detection of fftw variants (precision)

* nfft, pnfft: use fftw's selected_precisions; avoid repetitive calls to spec

Co-authored-by: Martin Lang <martin.lang@mpsd.mpg.de>
2022-06-09 08:47:12 -07:00
Tim Fuller
01f8236bf5
Allow more fine-grained control over what submodules are updated (#27293)
The "submodules" argument of the "version" directive can now accept
a callable that returns a list of submodules, in addition to the usual
Boolean values
2022-06-09 07:45:49 +02:00