Commit graph

14908 commits

Author SHA1 Message Date
Tomoki, Karatsu
03c684954e
r: Lower optimization level when using Fujitsu compiler@4.1.0. (#15418) 2020-03-10 16:21:14 -05:00
Dr. Christian Tacke
6993a82cb4
cryptsetup: Add pkgconfig dependency (#15422) 2020-03-10 16:18:59 -05:00
Elsa Gonsiorowski, PhD
9debb7e1b6
SCR: build with components (#14931)
* scr: add develop, legacy branches; version 2.0.0

squash! scr: add develop and legacy versions

* filo: package for SCR component

* spath: package for SCR component

* axl: update for versions 0.3 and 0.2

* scr: build with components

* spath: structure of +mpi if/else

* 👌 capitalization of ecp-veloc

* scr: branches are always greater than any version
2020-03-10 15:27:41 -05:00
broderickpt
c4c6accace
contrib-spiral: submit SPIRAL package recipe and HCOL package recipe … (#15188)
* contrib-spiral: submit SPIRAL package recipe and HCOL package recipe (extension package for SPIRAL) to spack

* contrib-spiral: fix flake8 complaints for spiral & hcol

* contrib-spiral: Revisions to package recipes to address comments

* contrib-spiral: remove unecessary 'test' function

* contrib-spiral: update hcol package to install in <prefix>/namespaces/packages/hcol

* contrib-spiral: don't import os to hcol

* contrib-spiral: tweak hcol package recipe
2020-03-10 13:07:53 -05:00
Greg Becker
bbbee6700b
bugfix: fix install_missing_compilers option bug from v0.14.0 (#15416)
* bugfix: ensure bootstrapped compilers built before packages using the compiler
2020-03-10 10:35:20 -07:00
Christoph Junghans
577860761b
decompressor: add support for bz2 (#15424) 2020-03-10 10:46:45 -06:00
Sergey Kosukhin
7118e24664
Parallel-netcdf: update package. (#15359)
* Parallel-netcdf: update package.

* Add a temporary patch for version 'develop'.

* Rename version 'develop' to 'master'.

* Drop the patch for 'master'.
2020-03-10 11:29:57 -05:00
Seth R. Johnson
21634e805e
libfabric: added v1.9.1 (#15405) 2020-03-10 17:09:46 +01:00
Christoph Junghans
7744070787
gromacs: remove simd variants (#13636) 2020-03-10 09:08:10 -06:00
TZ
48f8f0ec58
likwid: added v5.0.1 (#15421)
includes fixes for likwid-mpirun, better support for ARM and POWER, 
other bugfixes.

For full support of ARM and POWER, #14183 has to be merged, too.

Added TomTheBear as maintainer. He is the current main developer of
LIKWID.
2020-03-10 16:03:14 +01:00
Melven Roehrig-Zoellner
ebe7590310
bazel: add missing dependency on zip (#15402) 2020-03-10 10:18:29 +01:00
Mathias Anselmann
da677b3cb8
update binutils to 2.34 (#15401) 2020-03-10 10:15:31 +01:00
Justin S
b86aa4ec18
eagle: new package at v1.1.2 (#15409) 2020-03-10 10:05:34 +01:00
Tim Haines
65b131f373
Ignore Eclipse files and folders (#15413) 2020-03-10 09:58:40 +01:00
Howard Pritchard
f87dfb9828
openmpi: add version 4.0.3 (#15414)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-03-10 09:01:02 +01:00
Patrick Gartung
c7dda38826
Revert to gzip as the default buildcache compression as bzip2 is not always available. (#15412)
* Revert to gzip as the default buildcache compression as bzip2 is not always available.

* Flake8
2020-03-09 16:46:54 -05:00
ktsai7
fd69994c68
added cmake_args (#15411) 2020-03-09 14:07:11 -06:00
TZ
3f69cc9ec8
Gromacs: new version 2020.1 (#15399) 2020-03-09 11:35:54 -06:00
Toyohisa Kameyama
c919a7e302
exiv2: add zlib and expat dependency. (#15396) 2020-03-09 10:31:20 +01:00
Toyohisa Kameyama
c783493ace
fast-global-file-status: add openssl dependency. (#15398) 2020-03-09 10:29:02 +01:00
Stephen McDowell
2beefc6bfe
eigen variants have been removed (#15392)
* eigen variants have been removed

ref: https://github.com/spack/spack/pull/15357

* opencv ^eigen is ('build', 'run') dependency
2020-03-09 09:35:31 +01:00
Todd Gamblin
49ec260a9a
bugfix: installer.py shouldn't be executable (#15386)
This is a minor permission fix on the new installer.py introduced in #13100.
2020-03-07 23:48:18 -08:00
Adam J. Stewart
6f8d1b41d0
gnupg: add 2.2.19, add missing pinentry dep (#15390) 2020-03-07 17:00:14 -06:00
Adam J. Stewart
cd4530ca1f
libgcrypt: fix macOS tests (#15389) 2020-03-07 16:43:38 -06:00
Adam J. Stewart
b385ba0aa9
libgpg-error: add 1.37 (#15388) 2020-03-07 16:43:23 -06:00
Adam J. Stewart
a1e4b72794
pinentry: add new package (#15387) 2020-03-07 16:26:56 -06:00
Sinan
4e10eb08a9
new package: GunRock (#15383)
* new package: GunRock

* Update var/spack/repos/builtin/packages/gunrock/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* improve

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@github>
2020-03-07 13:31:29 -06:00
Massimiliano Culpo
b444fd25bb
ArchSpec: fix semantics of satisfies when not concrete and strict is true (#15319) 2020-03-07 13:58:33 +01:00
Peter Scheibel
697719c181
Only use stable versions for public mirror (#15100)
* add --skip-unstable-versions option to 'spack mirror create' which skips sources/resource for packages if their version is not stable (i.e. if they are the head of a git branch rather than a fixed commit)

* '--skip-unstable-versions' should skip all VCS sources/resources, not just those which are not cachable
2020-03-07 13:38:08 +01:00
Simon Pintarelli
9fd3b2be89
sirius: add versions 6.4.4, 6.5.0 (#15374)
- new versions 6.4.4, 6.5.0
2020-03-06 18:32:23 -06:00
Andrew W Elble
5b44a65881
Fix for being able to 'spack load' packages that have been renamed. (#14348)
* Fix for being able to 'spack load' packages that have been renamed.

* tests: add test for 'spack load' of a installed, but renamed/deleted package
2020-03-06 16:29:01 -08:00
George Hartzell
5965a91880
New package: bat (#15345)
* New package: bat

Add package for bat:

     A cat(1) clone with wings.

* Update copyright date

* Embiggen comment re build env settings

Provide a bit more explanatory text about why setup_build_environment
needs to set LLVM_CONFIG_PATH and LIBCLANG_PATH.

Co-authored-by: George Hartzell <ghartzell@audentestx.com>
2020-03-06 18:12:31 -06:00
Dr. Christian Tacke
ce287bccf8
flatbuffers: Allow building shared libraries (#15375)
Added a shared variant, that switches between shared and
static library building, like with most cmake packages.
2020-03-06 12:16:30 -06:00
iarspider
6412b9e71a
Add extra version of py-widgetsnbextension (#15372) 2020-03-06 11:21:33 -06:00
Robert Blake
cd38e87eef
New package: gengetopt, tool for C command line parsers. (#15367)
* New package: gengetopt, tool for C command line parsers.

* Adding url for `spack version` and `spack checksum`
2020-03-06 10:59:08 -06:00
Massimiliano Culpo
58e57a6986
eigen: updated url to point to gitlab (#15357)
* eigen: updated url to point to gitlab

fixes #13890

Eigen migrated from bitbucket to gitlab

* eigen: simplified package (no dependencies other than stdlib)

* Added TODO list for future improvements
2020-03-06 15:53:24 +01:00
Mark W. Krentel
441340771d
libunwind: remove version 2018.10.12, add stable branch (#15316)
* libunwind: remove version 2018.10.12, add stable branch

Finish cleaning up the libunwind version numbers.  The 2018.10.12
snapshot number didn't fit well with spack's ordering (my bad), and
1.4-rc1 is a near identical replacement.

Add a version for the 1.4-stable branch.

Add a variant for zlib compressed symbol tables (develop branch only).

Adjust packages caliper and hpctoolkit to adapt to the changes.

Add myself as maintainer.

* Flake

* Settle on renaming 'develop' to 'master' (to match the branch name)
and name the 'v1.4-stable' branch as '1.4-head'.  'stable' or
'1.4-stable' is a better name, but '1.4-head' (an infinity version)
sorts better.
2020-03-06 08:49:46 -06:00
Mathias Anselmann
8687ace8f9
Cscope: fix linking and update to v15.9 (#15358)
* explicitly link against libtinfo

* Update to v15.9

* fixed indentation

* fixed url definition

* added url vor current version again

* fixed indentation

* moving url_version to the bottom
2020-03-06 08:47:35 -06:00
Dr. Christian Tacke
83778f009e
munge: new version, local state path, misc (#15307)
* Add version 0.5.14
* Add variant to allow setting the localstatedir: See below
* Add bzip2 dependency
* Add myself to maintainers (I just think, I can care for
  this package)

About localstatedir:

munge has a server and a client.
They communicate via unix domain sockets.
This socket is in PREFIX/var.
This package provides the client, the server, and
development part (headers, libraries).

Let's assume one has the server part installed as a system
package.  This generally is a good idea, so that the server
gets started during boot. This means, that the socket is in
the system's /var.

If one now wants to use the client part (library!) via
spack, one has a problem: spack's munge looks in
SPACK-PACKAGE-PREFIX/var for the socket.

There needs to be a way to let the spack installed package
use the system's socket.

So add a variant to override the path during build:
localstatedir=/var.
2020-03-06 08:03:20 -06:00
iarspider
4391bb5f23
Update pycairo to 1.18.1 and fix dependencies (#15352)
* Update pycairo to 1.18.1 and fix dependencies

* Typo
2020-03-06 08:01:45 -06:00
Axel Huebl
c40915db05
openPMD-api: 0.11.0 (#15371)
Add the latest release of openPMD-api.
2020-03-06 11:20:31 +01:00
Chris Green
da5144793e
Allow overrides for spack.config set() and override(). (#14432)
Allows spack.config InternalConfigScope and Configuration.set() to
handle keys with trailing ':' to indicate replacement vs merge
behavior with respect to lower priority scopes.

Lists may now be replaced rather than merged (this behavior was
previously only available for dictionaries).

This commit adds tests for the new behavior.
2020-03-05 19:25:01 -08:00
Tamara Dahlgren
b2e7e7edaa
Recover coverage from subprocesses during unit tests (#15354)
* Recover coverage from subprocesses during unit tests
2020-03-05 16:54:29 -08:00
Adam J. Stewart
dd8afca9d8
Add Checksum for 1.4.1.4 Release (#15363)
* Add Checksum for 1.4.1.4 Release

Add checksum for 1.4.1.4 release.  Mark myself as maintainer.  List develop version.

* Update var/spack/repos/builtin/packages/libhio/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05 17:28:42 -06:00
Adam J. Stewart
aa0ab13a73
Python: add 3.8.2 (#15365) 2020-03-05 17:02:13 -06:00
Adam J. Stewart
656d1ac5ab
Update legion versions (#15364) 2020-03-05 16:28:35 -06:00
eugeneswalker
8cce884078
unifyfs: add patch to fix #15292 (#15315)
It was reported that UnifyFS had a bug with the --enable-mpi-mount
config option, which corresponds to the auto-mount variant. This bug
was fixed in the UnifyFS dev branch, however remains broken for the
0.9.0 version.

This adds a patch to the unifyfs package to fix the auto-mount
variant when installing with version 0.9.0.

This also removes the openssl dependency as unifyfs does not directly
depend on it. This was said to be a non-explicit dependency in #15258.
However, if it is needed, it is likely a non-explicit dependency of
one of unifyfs's dependencies and should be added there.

Fixes: #15292
2020-03-05 13:54:25 -08:00
Adam J. Stewart
da853a5daa
lammps: add most recent stable release (#15335)
* lammps: add most recent stable release

* Update var/spack/repos/builtin/packages/lammps/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05 15:19:18 -06:00
Patrick Gartung
820d147e08
Allow buildcaches keys to find public keys on the e4s mirror (#15361) 2020-03-05 15:15:40 -06:00
Adam J. Stewart
28a75a4c35
lastz: declare ch as type int (#15350) 2020-03-05 15:06:20 -06:00