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Author SHA1 Message Date
Todd Gamblin
c7f23ca0d6 Merge pull request #887 from adamjstewart/features/openmpi 
Re-add hwloc as a dependency of openmpi
 2016-05-05 00:53:10 -07:00
Todd Gamblin
d0acc9827a Merge pull request #884 from davydden/libtool_missing_dependency 
libtool: add a missing dependency
 2016-05-05 00:52:39 -07:00
Todd Gamblin
c1010c3422 Merge pull request #889 from adamjstewart/features/netcdf 
Remove hdf5 ~cxx constraint on netcdf
 2016-05-05 00:51:49 -07:00
Todd Gamblin
1181ad2bf0 Merge pull request #891 from adamjstewart/features/gcc 
Add latest version of GCC
 2016-05-05 00:51:05 -07:00
Todd Gamblin
053e687e79 Merge pull request #800 from eschnett/eschnett/qthreads 
Add some qthreads patches
 2016-05-05 00:49:32 -07:00
Todd Gamblin
7ac8ddde96 Merge pull request #897 from robertdfrench/https-urls-for-subversion 
Build Subversion with HTTP/S support
 2016-05-05 00:20:59 -07:00
Todd Gamblin
3dd5b2845b Merge pull request #900 from eschnett/eschnett/flex 
Update Flex to 2.6.0
 2016-05-05 00:11:50 -07:00
Todd Gamblin
55f1cafb70 Merge pull request #899 from LLNL/bugfix/github-808-mrnet 
added git commit for clang support
 2016-05-05 00:11:19 -07:00
Dhanannjay 'Djay' Deo
ef202fbe0c Build static and shared libraries for silo 2016-05-04 22:50:15 -04:00
Dhanannjay 'Djay' Deo
45e77e7739 Correctly extend std_cmake_args 2016-05-04 22:49:47 -04:00
Dhanannjay 'Djay' Deo
1785de0f31 remove hdf5 which is silo actually a silo dependency 2016-05-04 22:08:01 -04:00
Erik Schnetter
27de2a42d9 Update Flex to 2.6.0 2016-05-04 20:27:58 -04:00
Greg Lee
514a8c737a added git commit for clang support 2016-05-04 16:38:43 -07:00
Dhanannjay 'Djay' Deo
32f7b06a36 Add version 2.10.2 2016-05-04 18:14:38 -04:00
Patrick Gartung
67d64b804f more succinctly 2016-05-04 23:53:10 +02:00
Robert.French
bfe009f98d Subversion uses serf for http repos 
Add Scons package

Add serf package

Subversion uses serf for http repos
 2016-05-04 16:16:36 +00:00
Denis Davydov
796bf5f85c mvapich2: add self.spec.[mpicc|mpicxx|mpifc|mpif77] 2016-05-04 17:33:19 +02:00
Patrick Gartung
7eb463a66e only fail when it is apples clang 2016-05-04 15:05:56 +02:00
Denis Davydov
f417b1cf90 p4est: use mpicc,mpicxx,mpifc,mpif77 compiler variables instead of hardcoding names 2016-05-04 11:51:45 +02:00
Denis Davydov
c3317819cb mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names 2016-05-04 10:37:52 +02:00
Adam J. Stewart
88fa9084e2 Add latest version of GCC 2016-05-03 15:58:14 -05:00
Adam J. Stewart
a3d2d0cd22 Add latest OpenSSL versions 2016-05-03 15:44:23 -05:00
Adam J. Stewart
eaa45d8a9a Remove hdf5 ~cxx constraint on netcdf 2016-05-03 13:28:38 -05:00
Kelly (KT) Thompson
f4260da1c2 Mark SuperLU_DIST version 4.3 as the preferred version since petsc and trilinos are not tested with 5.0. 2016-05-03 12:05:35 -06:00
Adam J. Stewart
51c6867f72 Re-add hwloc as a dependency of openmpi 2016-05-03 10:30:35 -05:00
Erik Schnetter
40d578be95 Disable OpenBLAS's overriding of our "make -jN" option 2016-05-03 10:38:05 -04:00
Denis Davydov
0583bc9859 p4est: put back +tests variant 2016-05-03 16:21:10 +02:00
Denis Davydov
98f8192bde libtool: add a missing dependency 2016-05-03 15:15:55 +02:00
Kelly (KT) Thompson
89621faaea + Add version 5.0 download for SuperLU_DIST. 2016-05-02 20:21:03 -06:00
David Poliakoff
e74cc0df27 Updated docstring 2016-05-02 15:53:43 -07:00
David Poliakoff
afef04bb54 Added cnmem package` 2016-05-02 15:49:37 -07:00
David Poliakoff
179d308fe0 Added a package for the RAJA system 2016-05-02 14:32:57 -07:00
Todd Gamblin
372a455bea Merge pull request #873 from jppelteret/bugfix/paradiseo 
Add extra dependencies for Paradiseo
 2016-05-02 09:57:30 -07:00
Todd Gamblin
aa7444cd3d Merge pull request #870 from jppelteret/bugfix/glm 
Add missing dependency for glm
 2016-05-02 09:57:11 -07:00
Todd Gamblin
4fecf33416 Merge pull request #877 from vishalkenchan/develop 
bugfix: missing dependencies (m4) added for netcdf and autoconf
 2016-05-02 09:56:44 -07:00
Denis Davydov
2eb4248f90 dealii: fix a bug where P4EST_DIR was unconditionally requested 2016-05-02 18:53:13 +02:00
Denis Davydov
cde1d18399 dealii: add new dependency -- gsl 2016-05-02 18:53:13 +02:00
Todd Gamblin
999dda8f83 Merge pull request #708 from adamjstewart/fixes/qt 
Prevent use of system GTK+
 2016-05-02 09:41:51 -07:00
Todd Gamblin
568800c045 Merge pull request #875 from jppelteret/features/adol-c 
Added Adol-C package
 2016-05-02 09:30:23 -07:00
Adam J. Stewart
7255f6969b Merge branch 'develop' into features/argcomplete 2016-05-02 11:29:52 -05:00
Adam J. Stewart
17fa1b5007 Un-fix version 3 2016-05-02 11:28:20 -05:00
Adam J. Stewart
61e5ee5d63 Prevent use of system GTK+ 2016-05-02 11:28:20 -05:00
Massimiliano Culpo
cfc25d0a92 Merge branch 'develop' into openmpi_variants 2016-05-02 18:26:05 +02:00
Adam J. Stewart
9c3d8dae57 Add latest jpeg version 2016-05-02 11:17:38 -05:00
Adam J. Stewart
4e2154e58f Add argcomplete python package 2016-05-02 11:16:29 -05:00
Adam J. Stewart
c110865bf2 Remove OpenMPI dependency on hwloc 2016-05-02 11:06:33 -05:00
Adam J. Stewart
b99c8b641a Add hydra package 2016-05-02 11:06:33 -05:00
Vishal Boddu
e111add17f missing dependencies (m4) added for netcdf and autoconf 2016-05-02 14:31:02 +02:00
Jean-Paul Pelteret
5ae7276682 Fixes to installation with OpenMP (tested) and execution of test-suite 2016-05-02 11:01:14 +02:00
Jean-Paul Pelteret
631e235ef3 Added Adol-C package 2016-05-01 11:07:42 +02:00
Jean-Paul Pelteret
c33ffbae04 Add extra dependencies for Paradiseo. 2016-04-30 22:25:14 +02:00
Patrick Gartung
83108f815c Error out if +openmp used with OS X clang 2016-04-30 13:18:32 -05:00
Patrick Gartung
f8c14e1d98 Make openmp variant false by default. 2016-04-30 13:18:32 -05:00
Patrick Gartung
a588a1fd84 openmp needs to be an option for clang build 2016-04-30 13:18:32 -05:00
Jean-Paul Pelteret
8fc43046eb Add missing dependency for glm 2016-04-30 12:11:10 +02:00
Denis Davydov
3ad71700dd the_silver_searcher: add missing dependency 2016-04-29 09:52:49 +02:00
Denis Davydov
176b9febb4 libxcb: add missing dependencies 2016-04-29 09:06:15 +02:00
Denis Davydov
17f696d3b3 glib: add missing dependencies 2016-04-29 09:05:54 +02:00
Todd Gamblin
1b731e525f Merge pull request #703 from epfl-scitas/fixes/openssl_external 
fix : no warning when installing 'openssl@external'
 2016-04-28 10:25:35 -07:00
Todd Gamblin
b75a3e112b Merge pull request #855 from citibeth/efischer/160427-OpenblasFix 
openblas: Added +fpic variant to package.
 2016-04-28 10:19:36 -07:00
Elizabeth F
71ca837ada Add '+fpic' variant. 2016-04-27 20:36:41 -04:00
Elizabeth F
62d806d512 hdf5: Set preferred version, so as to not break NetCDF (for now). 2016-04-27 19:03:26 -04:00
Elizabeth F
ee6a75c9b5 Added missing -lpthread to OpenBLAS check. 
See: https://github.com/xianyi/OpenBLAS/wiki/faq#static_link
 2016-04-27 18:44:54 -04:00
Todd Gamblin
92afa52eec Merge pull request #804 from jppelteret/features/paradiseo 
Added package for Paradiseo.
 2016-04-26 13:00:09 -07:00
Todd Gamblin
d1a9328793 Merge pull request #824 from adamjstewart/features/ior 
Add IOR benchmark package
 2016-04-26 12:48:57 -07:00
Erik Schnetter
55d339194d Update hwloc to 1.11.3 2016-04-26 15:29:16 -04:00
Todd Gamblin
1d2916da8c Merge pull request #829 from davydden/openblas_unit_test 
openblas: a small unit test to make sure Lapack symbols are compiled
 2016-04-26 10:47:35 -07:00
Todd Gamblin
7fc69a6b51 Merge pull request #838 from davydden/dealii_dependencies 
dealii: add missing dependencies
 2016-04-26 10:34:00 -07:00
Todd Gamblin
237c843621 Merge pull request #837 from davydden/p4est_dependencies 
p4est: add missing dependencies
 2016-04-26 10:33:46 -07:00
Todd Gamblin
ef0fefc506 Merge pull request #836 from davydden/astyle_fix 
astyle: fix installation of the binary
 2016-04-26 10:33:24 -07:00
Todd Gamblin
9fb514ff81 Merge pull request #828 from glennpj/csvkit 
Add py-csvkit package
 2016-04-26 10:32:27 -07:00
Glenn Johnson
dfc0efa8ed Put f2py of py-numpy in python ignore list. (#827) 
There are many python packages that depend on py-numpy. Each one of
those will have a copy of f2py that will need to be put in the ignore
list for activation. Thise PR adds f2py to the ignore list in the python
package.py file so that it does not have to be done for each package
that depends on py-numpy. This follows the model of what is done for
py-setuptools.

This PR also removes the f2py ignore expression for python packages
that were using it as it is no longer needed in the individual packages.
 2016-04-26 10:32:14 -07:00
Glenn Johnson
b56bfcea96 Add the turbomole package. (#826) 
* Add the turbomole package.
This package has three modes of operation that need to be selected
independently. This is handled with spack vaiants. Turbomole has a builtin MPI
implementation so it does not need to depend on an mpi provider when using the
+mpi variant.

* Whitespace cleanup.
 2016-04-26 10:31:48 -07:00
Joseph Ciurej
8ec5e81186 Update Package : Zoltan (#833) 
* Added preliminary implementations for the debug and shared variants.

* Fixed a few problems with the '+shared' variant of the Zoltan package.
Added support for a few more important Zoltan package versions.

* Fixed a minor compiler incompatibility issue with the '+shared+mpi' variants.
 2016-04-26 10:24:36 -07:00
jppelteret
8e227f603d Fix: Add missing dependencies for gmp and eigen (#830) 
See https://groups.google.com/forum/#!topic/spack/9JMDwafjBUs
 2016-04-26 10:01:09 -07:00
Geoffrey Oxberry
f70046e6b7 MFEM version 3.1 (#749) 
MFEM is a free, lightweight, scalable C++ library for finite element
methods.

Includes lapack, hypre, metis, suite-sparse, mpi variants & tests for
serial and parallel versions.
 2016-04-26 10:00:24 -07:00
Denis Davydov
0ff4120692 dealii: add missing dependencies 2016-04-26 15:06:21 +02:00
Denis Davydov
8a45aa4185 p4est: add missing dependencies 2016-04-26 12:52:49 +02:00
Denis Davydov
168f9c46ea astyle: fix installation of the binary 2016-04-26 09:18:39 +02:00
Jean-Paul Pelteret
17b7305086 Added package for Paradiseo. 2016-04-26 09:12:27 +02:00
Elizabeth Fischer
1a585a6c74 Added nccmp package 2016-04-25 22:25:08 -04:00
Denis Davydov
dd37959899 output with new lines 2016-04-25 16:21:19 +02:00
Denis Davydov
42be50d10b add a test/output pair 2016-04-25 13:53:41 +02:00
Denis Davydov
b81cb554f5 openblas: a small unit test to make sure Lapack symbols are compiled 2016-04-25 13:30:20 +02:00
Glenn Johnson
2b7b7f6d97 Reformat description text. 2016-04-24 18:11:18 -05:00
Glenn Johnson
4e671c54ee Reformat the description. 2016-04-24 18:06:51 -05:00
Glenn Johnson
797af2e80f Add py-csvkit package 
This adds the py-csvkit package and needed dependencies for working with
csv files.
 2016-04-24 17:39:49 -05:00
Adam J. Stewart
a7ffffc336 Change homepage, explicitly disable 2016-04-24 17:14:33 -05:00
Adam J. Stewart
22e4ee5604 Add OSU Micro-Benchmarks package (#822) 
* Add OSU Micro-Benchmarks package

* Add workaround for GCC bug
 2016-04-23 13:29:47 -07:00
Ben Boeckel
e32416430c Update git (#819) 
* git: update to 2.8.0 final and add 2.8.1

* git: hard-depend on curl and expat

HTTP-based cloning is very prevalent now.
 2016-04-23 12:18:58 -07:00
Elizabeth Fischer
248248c6b2 Added package: NCView (#791) 
* ncview: Added package

* Removed FIXMEs
 2016-04-23 12:15:53 -07:00
Erik Schnetter
4e062d86b4 Refine wget's OpenSSL configuration options (#786) 2016-04-23 12:15:32 -07:00
Joseph Ciurej
d701d2ccf3 Updated the Swig package file to include versions for all of the popular Swig releases. (#790) 2016-04-23 12:15:14 -07:00
Glenn Johnson
62d175c984 This commit explicitly sets libdir. This is necessary because different 
systems use different defaults.
 2016-04-23 12:30:34 -05:00
Erik Schnetter
0cbaecca60 Don't use subprocess module 2016-04-22 21:52:11 -04:00
Adam J. Stewart
e7d2fa7084 Add IOR benchmark package 2016-04-22 12:30:24 -05:00
Ben Boeckel
5c4bb69af9 xerces-c: update to 3.1.3 (#811) 
The 3.1.2 tarball seems to have gone missing. Also switch to using bz2
rather than gz to reduce the download size.
 2016-04-21 19:29:20 -07:00
Denis Davydov
ef9347bcfb dealii: set DEAL_II_DIR when loading a module (#816) 2016-04-21 19:25:17 -07:00
Erik Schnetter
867e1333d0 Remove outdated comment 2016-04-20 17:01:26 -04:00
Erik Schnetter
7c155f7456 Check the installed HDF5 library for consistency 2016-04-20 16:33:59 -04:00
Erik Schnetter
1acb2a1a09 Add some qthreads patches 2016-04-19 16:45:05 -04:00
Jim Galarowicz
44321c5c24 Update the main Krell Institute and Argo Navis Tech. packages for MPI variant support, get source from github not sourceforge, tested external package usage, and general package clean-up 2016-04-18 16:46:15 -07:00
Kelly Thompson
dd84a57580 + On some systems, Dia also requires intltool. (#768) 2016-04-17 07:15:47 +02:00
Ben Boeckel
63bade7a0c metis: fix OS X install (#764) 
Without this, the binaries use relative paths for loading which causes
them to not be found when running binaries. Not sure why the existing
hack wasn't working, but this fixes it the proper way.
 2016-04-17 07:15:07 +02:00
Erik Schnetter
375de085e2 Make PAPI build on Darwin (#772) 
* Make PAPI build on Darwin

- don't use <malloc.h>
- run install_name_tool

* Use fix_darwin_install_name
 2016-04-17 07:14:34 +02:00
Erik Schnetter
fb4f361cd0 Update to version 4.1.0 (#785) 2016-04-17 07:12:52 +02:00
Kelly Thompson
523be30974 + Add CMake version 3.5.2. (#787) 2016-04-17 07:11:19 +02:00
Erik Schnetter
a25e33d96e Create lib directory 2016-04-17 06:50:15 +02:00
Elizabeth F
e03e87b791 1. Added variants to choose language interfaces. 2. Now produces relocatable code (+fpic) by default 2016-04-16 00:57:57 -04:00
Todd Gamblin
69f8d8fa7a Merge pull request #783 from adamjstewart/features/elk 
Add Elk package
 2016-04-14 18:34:03 +02:00
Adam J. Stewart
cf1914fc00 Also install species directory 2016-04-14 10:18:06 -05:00
Todd Gamblin
a73b7052c9 Merge branch 'osx-fixes' of git://github.com/mathstuf/spack into mathstuf-osx-fixes 2016-04-14 15:25:24 +02:00
Todd Gamblin
9e456acbab Merge pull request #779 from LLNL/bugfix/binutils-deps 
binutils depends on flex and bison.
 2016-04-14 15:23:35 +02:00
Todd Gamblin
01fab24c15 binutils depends on flex, bison, and m4 2016-04-14 11:47:35 +02:00
Todd Gamblin
d6a232dbe0 Merge pull request #767 from mathstuf/paraview-fixes 
Paraview fixes
 2016-04-14 11:29:46 +02:00
Todd Gamblin
f8543f7755 Merge pull request #780 from adamjstewart/fixes/hdf5 
fortran2003 option has been removed from HDF5
 2016-04-14 11:20:11 +02:00
Todd Gamblin
420a61491d Merge pull request #781 from jgalarowicz/qt3-fixes 
Fix compile issues with new libpng versions and qt3 builds by using a…
 2016-04-14 09:46:58 +02:00
Todd Gamblin
2bffd569d7 Merge pull request #782 from jgalarowicz/update-mrnet 
Update mrnet with new version source recognition and add krell related patch controlled by a variant.
 2016-04-14 09:45:40 +02:00
Jim Galarowicz
f9aafeee1e Loosen the boost requirement from a specific version that was specified in my initial commit. 2016-04-13 21:58:57 -07:00
Jim Galarowicz
2cf9ebc62c Fix compile issues with new libpng versions and qt3 builds by using an older version of libpng. In libpng, make older versions available. 2016-04-13 15:00:45 -07:00
Adam J. Stewart
5717cb981e fortran2003 option has been removed from HDF5 2016-04-13 15:03:03 -05:00
Todd Gamblin
2fe9bfcd82 Merge pull request #773 from eschnett/eschnett/julia 
Update Julia
 2016-04-13 12:02:19 +02:00
Todd Gamblin
c96dd43174 Merge pull request #776 from adamjstewart/features/pnetcdf 
Add latest version of PnetCDF
 2016-04-13 01:29:37 +02:00
Tom Scogland
04392babca add setuptools version 20.7.0 2016-04-12 15:59:20 -07:00
Todd Gamblin
7acc7c4dae Merge pull request #712 from Rombur/fix_pysetuptools 
Replace py-setuptools version 20.5 by version 20.6.7
 2016-04-13 00:54:51 +02:00
Adam J. Stewart
abe744c5a0 Add latest version of PnetCDF 2016-04-12 16:53:45 -05:00
Adam J. Stewart
01f2dd03d5 Also install examples directory 2016-04-12 16:51:27 -05:00
Adam J. Stewart
cb6c6fb374 Add elk package 2016-04-11 16:28:30 -05:00
Erik Schnetter
882e2e42cf Merge branch 'develop' into eschnett/julia 2016-04-11 15:40:27 -04:00
Erik Schnetter
df7e3f8635 Correct version dependency for OpenBLAS patch 2016-04-09 09:58:48 -04:00
Massimiliano Culpo
6cffac79bd openmpi : added a few variants 2016-04-09 11:21:29 +02:00
Ben Boeckel
20b9f34b5c paraview: use internal hdf5 
Spack's HDF5 is too new. Rather than forcing everything in a ParaView
chain to use older HDF5, use the internal one until ParaView is patched
properly.
 2016-04-08 15:09:02 -04:00
Ben Boeckel
6e56ba9f24 paraview: use internal netcdf 
VTK needs to learn to cope with netcdf being split like this.
 2016-04-08 15:08:29 -04:00
Ben Boeckel
3a4aac0213 paraview: use the right cmake variables 2016-04-08 15:08:09 -04:00
Erik Schnetter
f461b99722 Building OpenBLAS requires recent binutils 2016-04-08 14:31:40 -04:00
Ben Boeckel
9eaf735bcd py-setuptools: add 20.6.7 2016-04-08 12:03:45 -04:00
Ben Boeckel
dcd6b19348 py-setuptools: sort versions 2016-04-08 12:03:36 -04:00
Ben Boeckel
6c409d6b92 py-matplotlib: depend on pkg-config 
On OS X, freetype isn't found by default, but pkg-config can.
 2016-04-08 12:03:05 -04:00
Ben Boeckel
7d19154e18 pkg-config: use the internal glib 
glib requires pkg-config itself, so on machines without pkg-config,
there's a bootstrapping problem.
 2016-04-08 12:01:28 -04:00
Todd Gamblin
e73caad0d7 Merge pull request #747 from KineticTheory/pkg-global 
Package global depends on ncurses
 2016-04-07 00:20:15 -07:00
Glenn Johnson
8a7f34665b Make sure base bioconductor package can be installed. 2016-04-06 23:05:49 -05:00
Geoffrey Oxberry
bbd328d307 metis 5: fix download url 
Spack picks up the wrong download for metis 5.1.0 from parsing
the url field for metis 4.0.3. Add an explicit url field to fix
this bug.
 2016-04-06 16:58:48 -07:00
Todd Gamblin
4437bae16d Merge pull request #750 from goxberry/metis-4.0.3 
metis 4.0.3
 2016-04-06 16:05:02 -07:00
Todd Gamblin
cac819766e Merge pull request #755 from adamjstewart/features/bash 
Add bash package
 2016-04-06 16:02:10 -07:00
Todd Gamblin
25d48f700c Merge pull request #752 from KineticTheory/pkg-netlib-lapack 
Second attempt at PR#741
 2016-04-06 16:01:33 -07:00
Geoffrey Oxberry
ddaba07d82 metis 4.0.3 
Add version 4.0.3 to metis package. Attempted to implement reasonable
versions of all variants declared for metis@5.1.0; some of these do
not have analogues in metis@4.0.3, and errors are raised accordingly.

Also updated dependencies of packages with depends_on('metis') to
depends_on('metis@5:') to ensure that these packages still build.
 2016-04-06 15:49:59 -07:00
Glenn Johnson
32779ab1f6 Add r-filehash to test version naming. 2016-04-06 17:02:34 -05:00
Massimiliano Culpo
c113d390a7 mvapich2 : MPI compiler wrapper will use spack compilers during the installation phase 
mpich : fixed wrong function signature
 2016-04-06 23:51:47 +02:00
Glenn Johnson
fbabfc593d Make R extensable and add a couple of packages for verification. 
Added R as a build system so that the create template will have the
correct configure line.
Added a regex for version parsing as the R URLs are a little odd.
 2016-04-06 16:44:22 -05:00
Adam J. Stewart
380a2b23e6 Add bash package 2016-04-06 15:57:03 -05:00