Commit graph

10160 commits

Author SHA1 Message Date
Matthias Wolf
7252066a32
py-jinja2-time: new package (#14910) 2020-02-13 10:07:07 +01:00
Matthias Wolf
06c85ea5bf
py-elasticsearch: added v7.5.1 and v6.4.0 (#14913) 2020-02-13 10:06:01 +01:00
Matthias Wolf
3dd844e597
py-clustershell: new package (#14914) 2020-02-13 10:03:45 +01:00
Matthias Wolf
fb482ae0c9
py-magic: new package (#14912) 2020-02-13 10:03:18 +01:00
Matthias Diener
a337d27874
gdb: added v9.1 (#14919) 2020-02-13 09:51:04 +01:00
Federico Ficarelli
de84bd3f24
hipsycl: new package and new 'sycl' virtual package (#14051) 2020-02-13 07:32:39 +01:00
eugeneswalker
5243d270d4 bmi depends on automake for build 2020-02-12 21:58:35 -08:00
noguchi-k
38303a6a79
macsio: cast JsonGetInt from int to unsigned int (#14736)
* macsio: cast from int to unsigned int

* macsio: apply a patch only when version is 1.1
2020-02-12 20:13:26 -06:00
Chuck Atkins
90f3635afd
protobuf: Fix intel compiler failures. (#14916) 2020-02-12 16:21:43 -05:00
Jon Rood
7e50cec5a4
Adding Intel LLVM compiler (#13618)
* Adding Intel LLVM compiler.

* Fixing some minor issues.

* Split build environment on run environment in intel-llvm.
2020-02-12 12:30:04 -06:00
Dan Lipsa
ca66ab6901
Paraview: fix PYTHONPATH for static build. (#14648)
* Fix PYTHONPATH for static build.

* Only for the latest version.
2020-02-12 13:24:09 -05:00
Axel Huebl
3b2c534e73
openPMD-api: Build Env Fix & Dev (#14904)
- fix a missing `env.` prefix in the build environment.
- rename development branch to same name as in git
2020-02-12 10:02:01 +01:00
Axel Huebl
b5a3ee636b
WarpX: master is the new develop (#14898)
WarpX removed the `dev` branch in favor of a simpler,
`master`-centric development model.
`master` is the new development branch and there is no
stable branch anymore (we use tags and release branches
instead).
2020-02-11 20:47:50 -08:00
victorusu
78ce1c7ce4
New package: ReFrame (#14737) 2020-02-11 17:51:26 -08:00
Hadrien G
c8cb480eb7
ROOT: Add Pythia8 support (#14790) 2020-02-11 17:38:22 -08:00
darmac
cf120d7441
OpenCV package: add versions 4.2.0, 4.1.2, and 4.1.1(#14814) 2020-02-11 17:34:44 -08:00
Hadrien G
947dabc356
[dd4hep] Make DDDigi work with current TBB releases (#14791)
Add patch for DDDigi's broken TBB support. The issue is fixed in
DD4hep master so the patch is only required for 1.11.0
2020-02-11 17:17:05 -08:00
Sajid Ali
2c63ea49d1
New package: libvips (#14794) 2020-02-11 17:02:39 -08:00
darmac
630611a786
libdrm: add version 2.4.100 (#14809) 2020-02-11 16:57:18 -08:00
codeandkey
78f16d703d r-truncdist: new package at 1.0-2 2020-02-11 16:52:51 -08:00
Jen Herting
582e7ce2c8 [mono] add version 6.8.0.105 2020-02-11 16:49:35 -08:00
Scott Wittenburg
c2885990b8
Fix intel-mkl package (#14856)
* Add cpio package

* intel-mkl: Depend on cli tool needed during build
2020-02-11 16:21:49 -06:00
Seth R. Johnson
5c33f638d7
Fix QT4 platform detection for linux clang (#14891)
* Fix QT4 platform name for linux clang

* Fix clang compiler flags on QT4
2020-02-11 14:00:02 -06:00
Frédéric Simonis
e8b6c40b31
precice: add version 2.0.0 (#14842)
Added python3 dependency
Added support for new CMake variables
2020-02-11 10:06:03 +01:00
Matthias Diener
7706b76d3a
unifdef: added new package (#14880) 2020-02-11 10:03:44 +01:00
Christoph Junghans
1a41ec766a
heffte: added v0.2 (#14881) 2020-02-11 10:02:17 +01:00
darmac
35df75ee77
hepmc: added versions up to v3.2.0 (#14805) 2020-02-11 09:46:59 +01:00
Brian Van Essen
490508d324
Hydrogen: update dependency on aluminum (#14760)
* Hydrogen now depends on `aluminum +nccl` vs. `aluminum +mpi_cuda`
* Hydrogen: Simplify Mac OS OpenMP-detection logic
* Aluminum: Add Mac OS OpenMP-detection logic
* LBANN: depend on conduit@0.4.0: instead of conduit@master
2020-02-10 12:13:47 -08:00
Massimiliano Culpo
357786ce6b
Spack find: fix queries that specify dependencies (#14757)
Fixes #10019

If multiple instances of a package were installed in a single
instance of Spack, and they differed in terms of dependencies, then
"spack find" would not distinguish specs based on their dependencies.
For example if two instances of X were installed, one with Y and one
with Z, then "spack find X ^Y" would display both instances of X.
2020-02-10 11:22:21 -08:00
Peter Scheibel
4e32505770
libedit package: add version 3.1-20191231 (#14851)
This new version of libedit can make use of an ncurses dependency
built with +termlib (which moves some symbols into a separate
libtinfo).
2020-02-10 10:44:52 -08:00
Glenn P Johnson
37a6b8d54f Fix vim build with ^ncurses+termlib
This PR will set the approriate library if ncurses is built with a
separate tinfo library.
2020-02-10 10:25:35 -08:00
darmac
c77eeca61e icedtea: added versions up to v3.9.0 (#14806) 2020-02-10 11:08:45 +01:00
Glenn Johnson
745a843911 New package: r-biomartr (#14812)
This PR creates the r-biomartr package as well as needed new packages
and updates.

- new dependency: r-philentropy
- update: r-curl
2020-02-10 11:08:04 +01:00
Hadrien G
cb3dbea198 acts-core: added v0.16.0 (#14839)
* Adapt to ACTS v0.16

* ACTS uses the DD4hep XML components nowadays
2020-02-10 11:06:56 +01:00
Glenn Johnson
8aa1eba2e0 New package: r-watermelon (#14864)
This PR creates the r-watermelon package, along with dependencies.

- new package: r-fdb-infiniummethylation-hg19
- new package: r-illuminahumanmethylation450kanno-ilmn12-hg19
- new package: r-lumi
- new package: r-methylumi
- new package: r-roc
- new package: r-txdb-hsapiens-ucsc-hg19-knowngene
- updated package: r-matrixstats, new version needed as a dependency
2020-02-10 10:49:34 +01:00
Glenn Johnson
1ed0efec7d New package: r-suppdists (#14865) 2020-02-10 10:44:17 +01:00
Glenn Johnson
bd442e884a New package: r-imager (#14866)
This PR adds the r-imager package and dependencies.

- new package: r-bmp
- new package: r-readbitmap
2020-02-10 10:44:00 +01:00
Glenn Johnson
ad914c28d7 New package: r-proj (#14872) 2020-02-10 10:43:27 +01:00
Glenn Johnson
d00a3eda6b New package: r-proj4 (#14871) 2020-02-10 10:42:32 +01:00
Glenn Johnson
22df37c328 New package: r-pscbs (#14867)
This PR adds the r-pscbs package along with new dependencies and updates.

- new package: r-aroma-light
- new package: r-r-cache
- updated package: r-r-oo
2020-02-10 10:41:56 +01:00
Glenn Johnson
716978e00c New package: r-copula (#14874)
This PR adds the r-copula package and dependencies.

- new package: r-adgoftest
- new package: r-gsl
- new package: r-pspline
- new package: r-stabledist
2020-02-10 10:40:47 +01:00
Glenn Johnson
42c829adb4 New package: r-gsalib (#14873) 2020-02-10 10:38:44 +01:00
Kai Torben Ohlhus
4d173579cb openblas: added v3.8.0 (#14875) 2020-02-10 10:35:29 +01:00
darmac
f274d89c33 xterm: added versions up to v353 (#14829) 2020-02-10 09:44:50 +01:00
darmac
85b6e3e6d4 openldap: added v2.4.49 (#14815) 2020-02-10 09:40:46 +01:00
darmac
1c5838be5c pngquant : add depency on libpng (#14836) 2020-02-10 09:39:45 +01:00
Kai Torben Ohlhus
3ba5df3763 octave: add 5.2.0 (#14868)
Add version Octave 5.2.0 including sha256.
2020-02-09 21:04:09 -06:00
Glenn Johnson
30b30e11dc New package - r-rmariadb (#14762)
* New package - r-rmariadb

This PR creates the r-rmariadb package. It also includes an update to
the r-dbi package as a newer version of that is needed.

* Update var/spack/repos/builtin/packages/r-rmariadb/package.py

Argh, copy/paste. I wish the mirror would list itself as the archive site as well, but it just mirrors that data field from CRAN site. Thanks for catching that, I will make sure to look for that in the future.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Use mariadb-client

Use mariadb-client so people can set a preferred provider.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-09 19:26:31 -06:00
Mark W. Krentel
7a10478708 intel-tbb: fix sha256 sums for 2020 versions
Fixes #14850.  Commit 6b1958219 added versions 2020 and 2020.1 for
intel-tbb as part of updating several intel packages but added the
wrong sha256 sums for the github/01org repository.

Also, version 2020 is 2020, not 2020.0.

Add patch makefile-debug to restore the debug targets.
2020-02-09 12:26:38 -08:00
Dan Lipsa
e22ac814b0
Align default libxml2 settings for gettext and Python (#14795)
Python depends on gettext. Packages that depend on gettext and Python
together will encounter a concretizer bug which incorrectly detects
a constraint conflict. This sets the default value of +libxml2 in
Python to be the same as gettext so that packages which depend on
both (like mesa) can successfully concretize without adding manual
constraints.
2020-02-07 16:55:04 -08:00
codeandkey
3e5427078d r-evd: new package at 2.3-3 2020-02-07 14:51:24 -08:00
codeandkey
3a3a58a106 r-stargazer: new package at 5.2.2 2020-02-07 14:50:32 -08:00
Adam J. Stewart
d1d5f5f9e7
patch aws-parallelcluster so that it doesn't require enum34 (#14796)
* aws-parallelcluster always depends on enum34

* Build aws-parallelcluster without enum34

* Update homepage

* Add unit tests
2020-02-07 11:20:19 -06:00
Themos Tsikas
f685d538d8
NAG Compiler 7.0 (Build 7009) download checksum (#14840) 2020-02-07 09:33:37 -06:00
darmac
2c3e2669f2
imlib2: added v1.6.0 and v1.6.1 (#14807) 2020-02-07 14:05:50 +01:00
darmac
fd9b1fb6de
libconfig: added v1.7.2 (#14808) 2020-02-07 14:04:40 +01:00
darmac
4cb8294800
lighttpd: added versions up to v1.4.55 (#14810) 2020-02-07 14:04:21 +01:00
darmac
5bfb0eb447
maven: added versions up to v3.6.3 (#14811) 2020-02-07 13:47:38 +01:00
darmac
1203134253
mysql: added v8.0.17, v8.0.18 and v8.0.19 (#14813) 2020-02-07 13:46:55 +01:00
darmac
fecb26763d
pangomm: added versions up to v2.41.3 (#14816) 2020-02-07 13:43:43 +01:00
darmac
8c1845581d
qwt: added v6.1.3 (#14820) 2020-02-07 13:41:30 +01:00
darmac
8c1aee1b78
skopeo: added v0.1.40 (#14824) 2020-02-07 13:30:44 +01:00
darmac
ef9cb97376
plplot: added v5.14.0 and v5.15.0 (#14817) 2020-02-07 13:30:12 +01:00
darmac
e4cac22462
qt: added v5.14.0 and v5.14.1 (#14821) 2020-02-07 13:26:14 +01:00
darmac
291c110700
rclone: added new versions up to v1.51.0 (#14822) 2020-02-07 13:23:00 +01:00
darmac
4d3bd1116c
scala: added v2.12.10 and v2.13.1 (#14823) 2020-02-07 13:21:15 +01:00
darmac
7de3ea4e19
squashfs: added v4.4 (#14825) 2020-02-07 13:19:09 +01:00
darmac
710fabd68a
wireshark: added new versions up to v3.2.1 (#14828) 2020-02-07 13:18:29 +01:00
darmac
f9889526f2
thrift: added v0.12.0 and v0.13.0 (#14831) 2020-02-07 13:14:16 +01:00
darmac
7d9a0fa180
hunspell : fix 1.7.0 sha256sum (#14832) 2020-02-07 13:13:22 +01:00
Figroc Chen
458c9a22bf
tensorflow-serving-client: add new version 2.1.0 (#14786) 2020-02-06 12:20:55 -06:00
Robert Mijakovic
6b19582198
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… (#14783)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..
2020-02-06 09:20:01 -06:00
Benoist LAURENT
f7e2e84647
Update package.py (#14784)
Fix download link
2020-02-06 09:18:16 -06:00
Massimiliano Culpo
759f6b6d13
Added optimized version of Blis for AMD (#14780)
The Blis package has been refactored to be able to
reuse the build logic for the fork of the project
optimized for AMD.
2020-02-06 07:58:51 -06:00
Figroc Chen
e62c82de7f
grpc: added v1.25.0, v1.26.0 and v1.27.0 (#14781) 2020-02-06 13:20:37 +01:00
darmac
88289cd2c7
graphicsmagick: added versions up to v1.3.34 (#14778) 2020-02-06 11:12:10 +01:00
darmac
1a846abbe8
go: added v1.13.7 (#14777) 2020-02-06 10:54:10 +01:00
iarspider
f66f56287d
geant4: add missing dependency on geant4-data (#14767) 2020-02-06 10:40:56 +01:00
darmac
f745b790f3
gnuplot: added v5.2.8 (#14776) 2020-02-06 10:34:04 +01:00
darmac
bb0b88f38a
enchant: added v2.2.6 and v2.2.7 (#14775) 2020-02-06 10:33:16 +01:00
darmac
588c87c665
blis: added v0.6.1 (#14766) 2020-02-06 10:03:08 +01:00
darmac
c2460dbcd2
cln: added v1.3.5 and v1.3.6 (#14768) 2020-02-06 09:59:51 +01:00
darmac
3b38a45a76
gl2ps: added v1.4.0 (#14773) 2020-02-06 09:58:46 +01:00
darmac
29a906d20c
ghostscript: added v9.27 and v9.50 (#14772) 2020-02-06 09:57:42 +01:00
darmac
0a92b54701
coreutils: added v8.30 and v8.31 (#14770) 2020-02-06 09:56:01 +01:00
darmac
2dab92742d
atop: added versions up to v2.5.0 (#14765) 2020-02-06 08:51:34 +01:00
darmac
58a905ec76
ant: added versions up to v1.10.7 (#14764) 2020-02-06 08:46:13 +01:00
Glenn Johnson
1f6f812696
Update llvm, adjust dependency specs and conflicts (#14561)
This PR adds a new version of llvm and fixes the dependency specs.

- This package depends on libtinfo in all cases so change the ncurses
  dependency to reflect that
- if +lldb is in the spec but +python is not then do not build the lldb
  python support
- build lldb python support only if +python is in the spec with +lldb
- install the llvm python bindings if +python is in the spec
- install the clang python bindings if +clang and +python are in the spec
- Fixes for conflicts with ~clang
- Fix typo in conflict of compiler-rt and flang
2020-02-05 20:37:08 -06:00
Michael Kuhn
1a0c31703a
acts-core package: build root with cxxstd=17 for 0.8.1 and newer (#14761)
The build fails if root uses an older C++ standard.
2020-02-05 17:45:17 -08:00
Cameron Smith
bce4bec059
PUMI package: add version 2.2.2 (#14751) 2020-02-05 17:32:35 -08:00
Themos Tsikas
ba25bb3050
NAG Compiler 6.2 (Build 6252) download checksum (#14750) 2020-02-05 08:02:46 -06:00
Seth R. Johnson
57cc7831bf
qt: fix on Intel (#14748)
Follow up from #14745
2020-02-05 10:23:58 +01:00
Eisuke Kawashima
ffdde40f56
Bump Open Babel to 3 (#14738) 2020-02-04 21:05:19 -06:00
Seth R. Johnson
29a01f488c
Fix QT on Intel (#14745)
- More robustly handle compiler version switching between QT4 and 5, and
  mac/linux, and gcc/intel/clang
- Remove assumption about intel linker being in path
2020-02-04 21:03:47 -06:00
Seth R. Johnson
731148e0e1
Use CMake for libmng package (#14747)
* Convert libmng to use CMake rather than autoconf

The autoconf script failed to recognize the intel compiler; it was
harwired to use gcc.

* Simplify cmake logic and remove unused variant
2020-02-04 19:33:33 -06:00
Seth R. Johnson
52d1f5b839
Remove python patch for inapplicable versions (#14746)
This patch was merged in to upstream python 3.7 and is fixed in 3.7.6.
2020-02-04 19:32:48 -06:00
Christoph Junghans
1974ad4e7f
heffte: initial commit (#14744) 2020-02-04 15:06:03 -07:00
Jennifer Herting
d4d82281d1
[rust] added version 1.41.0 (#14742) 2020-02-04 15:11:36 -06:00
Jennifer Herting
997a0f4207
New version for mariadb and disable dtrace (#14734)
* [mariadb] added version 10.4.8

* [mariadb] disabled dtrace
2020-02-04 15:01:25 -06:00
Rao Garimella
b34e7ad28f
MSTK package: add version 3.3.2 (#14689) 2020-02-04 11:15:45 -08:00