Commit graph

15666 commits

Author SHA1 Message Date
Stephen Herbein
9e3470d797 flux: add latest releases and checksum
The next release 0.17.0 will also require python3.6+, pre-emptively
prepare for that release.  Also support current master branch.
2020-05-22 19:37:47 -07:00
Amjad Kotobi
eee6942c8b r-nimble: New package 2020-05-22 19:30:41 -07:00
Amjad Kotobi
9bcf4480b5 r-rferns: New package 2020-05-22 19:20:52 -07:00
Luca Heltai
55eb192234
dealii: 9.2.0 release (#16743) 2020-05-22 19:19:19 -07:00
Amjad Kotobi
3a336b328a
r-reticulate: add version; dependencies (#16747)
* Add version 1.15
* Add link dependency on r-rcpp
* Add dependency on r-rappdirs
2020-05-22 19:17:11 -07:00
Sergey Kosukhin
e18c5316bd cdo: fix url for version 1.9.8 2020-05-22 19:12:10 -07:00
Miroslav Stoyanov
86dd42ec70
tasmanian: add version 7.1 (#16769) 2020-05-22 19:10:21 -07:00
Michael Kuhn
be570aa655 zstd: Add 1.4.5 2020-05-22 19:07:29 -07:00
Adam J. Stewart
f17352f6f7
py-horovod: add 0.19.3 (#16768) 2020-05-22 19:20:25 -05:00
Seth R. Johnson
6ac8cf8126
IWYU: fix 0.14 build (#16761)
* IWYU: fix 0.14 build

The CMake patch used for 0.13 hadn't been applied to the master when
0.14 was released, and this version of IWYU requires C++14 or higher.

* Flake8
2020-05-22 15:07:59 -05:00
Seth R. Johnson
04046c15de
Mark Valgrind as conflicting with macOS > 10.13 (#16759)
```
    '/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-valgrind-3.15.0-mtir7ubjz7mqmjbb7bogze2qm35hl4ze/spack-src/configure' '--prefix=/ornldev/code/spack/opt/spack/clang-11.0.0-apple/valgrind/mtir7ub' '--enable-only64bit' '--build=amd64-darwin'
1 error found in build log:
     43    checking host system type... x86_64-pc-darwin
     44    checking for a supported CPU... ok (x86_64)
     45    checking for a 64-bit only build... yes
     46    checking for a 32-bit only build... no
     47    checking for a supported OS... ok (darwin)
     48    checking for the kernel version... unsupported (18.7.0)
  >> 49    configure: error: Valgrind works on Darwin 10.x, 11.x, 12.x, 13.x, 14.x, 15.x, 16.x and 17.x (Mac OS X 10.6/7/8/9/10/11 and macOS 10.12/13)
```
2020-05-22 15:07:45 -05:00
Seth R. Johnson
106a121b83
[Trilinos] Make MPI optional (#16685)
* Make MPI optional for Trilinos

* Use 'define' and 'define_from_variant' in trilinos package
2020-05-22 14:40:21 -05:00
Ethan Stam
7449bf8bab
ParaView: conflict ~opengl2 with versions 5.5 and up (#16742) 2020-05-22 10:33:19 -05:00
Rob Latham
ed037edd26
prrte uses libev data structues, not libevent (#16530)
* use libevent not libev

* Add Ralph Castain as a maintainer
2020-05-22 10:31:10 -05:00
noguchi-k
d51635e6bd
ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler. (#16737)
* ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler.

* ffr: changed to elif.
2020-05-22 10:28:57 -05:00
Carlos Bederián
1d936a8cc6
julia: Fix LLVM build failing with newer versions of CMake (#16738) 2020-05-22 10:24:54 -05:00
Justin S
d2d35f80d1
fraggenescan: new package at v1.31 (#16587)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-22 17:17:43 +02:00
Seth R. Johnson
c9df2dea95
IWYU: update include-what-you-use version (#16760) 2020-05-22 08:55:29 -05:00
Mathias Anselmann
c6d7405009
superlu-dist: added v6.2.0 and v6.3.1 (#16704) 2020-05-22 14:58:53 +02:00
Carlos Bederián
0581e6abb3
julia: added v1.4.1 (#16739) 2020-05-22 13:56:35 +02:00
Justin S
407f1bdb92
genometools: require cairo pdf backend (#16753) 2020-05-22 13:49:50 +02:00
Cody Balos
f6bef306ec
sundials: added v5.2.0 and v5.3.0 (#16752) 2020-05-22 13:39:57 +02:00
Toyohisa Kameyama
75b0d0b145
charmpp: added support to Fujitsu compilers. (#16756) 2020-05-22 13:31:31 +02:00
Tomoki, Karatsu
a9b64bcaf1
autotools: delete args from postdep objects when %fj (#16274) 2020-05-21 20:50:57 +02:00
Amjad Kotobi
661832a6c6
r-boruta: new package at v7.0.0 (#16746) 2020-05-21 17:52:55 +02:00
Amjad Kotobi
7d55b88c43
r-caracas: new package at v1.0.0 (#16748) 2020-05-21 17:48:58 +02:00
Cameron Stanavige
6445c2e807
unifyfs: update gotcha dependency version (#16736)
The dev branch of UnifyFS now depends on the latest release of
GOTCHA, and will future releases.

This updates our spackage to depend on the correct version of GOTCHA
depending on the version of UnifyFS being installed.
2020-05-20 22:35:22 -05:00
Amjad Kotobi
18d1531263
r-spatstat: New package (#16729)
* r-spatstat: New package

* r-spatstat: version dependency added
2020-05-20 22:34:37 -05:00
Antonio Arena
4118a01774
Install gaussian using their scripts (#16723)
* Create VMD recipe

This is a new recipe to install VMD on Spack-managed hosts.

* Fix lint errors.

* Use plain Package

As per peer-review:
- Use Package to build
- Use configure to create a Makefile
- Use install to copy files to prefix directory

* Move VMD package to correct path, duh...

* Restructure description so first short paragraph can be used by module files.

* Add an empty line as suggested by peer-review. That's how you separate paragraphs.

* Remove extra spaces.

* Use setup_build_environment since that's where you're supposed to export OS variblaes. Thanks to peer-review for spotting this.

* Create VMD recipe

This is a new recipe to install VMD on Spack-managed hosts.

* Fix lint errors.

* Use plain Package

As per peer-review:
- Use Package to build
- Use configure to create a Makefile
- Use install to copy files to prefix directory

* Move VMD package to correct path, duh...

* Add Cubist (#16069)

* Add Cubist

* enhance recipe

* Not using OS module anymore

* remove white space

* Fix build shell

* make Flake8 happy

* use bash shell for build

* Convert it To MakefilePackage as per peer-review

* dbcsr: expose all options, check openblas feats (#16034)

* dbcsr: expose all options, check openblas feats

* dbcsr: use Ninja to build, ensure serialized tests

* dbcsr: add myself as maintainer

* MPark.Variant: GCC 7.3.1 Conflict (#16081)

* MPark.Variant: GCC 7.3.1 Conflict

Due to an ICE in this specific patch-release of GCC, compile
errors in downstream packages should be avoided with a clean
conflict.

* Fix superfluous spaces

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Move VMD package to correct path, duh...

* Add an empty line as suggested by peer-review. That's how you separate paragraphs.

* New matlab versions (#16086)

* Add new version 1.1.1 (#16087)

* New package bonniepp added (#16091)

* openbabel: fix compilation errors (#16090)

- Disable maeparser as it is broken with CMake
- Added missing dependencies

* singularity: updated maintainer list (#16093)

* New version xrootd-4.11.3 (#16092)

* I added Gaussian 16. I also execute bsd/install to fix scripts instead of filtering them.

* revert VMD so only Gaussian is in my PR.

* revert VMD so only Gaussian is in my PR.

* revert VMD so only Gaussian is in my PR.

* I added myself as a package maintainer.

Co-authored-by: asmaahassan90 <31959389+asmaahassan90@users.noreply.github.com>
Co-authored-by: Tiziano Müller <tiziano.mueller@chem.uzh.ch>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Amjad Kotobi <amjadkotbi@gmail.com>
Co-authored-by: athanasio <athanasio@users.noreply.github.com>
Co-authored-by: Carlos Arango Gutierrez <arangogutierrez@gmail.com>
2020-05-20 22:34:03 -05:00
Toyohisa Kameyama
51ff18ef8d
mxnet: Fix dependency and add new version. (#16714)
* mxnet: Fix dependency and add new version.

1. Fix opencv and numpy dependency.
2. Add version 1.6.0.

* typo in patch is fixed.
fixed spec access.
2020-05-20 22:33:31 -05:00
Jeremy
bcd5dd6e3e
add SST packages and dependencies (#16618) 2020-05-20 22:15:02 -05:00
Greg Becker
cfb6f21236
externals: allow package prefs to configure default not buildable (#16735)
Allows `all` to be configured non-buildable in packages.yaml.

The following config would only allow zlib to be built by Spack, all other packages would have to be found as externals.

```
packages:
  all:
    buildable: False
  zlib:
    buildable: True
```
2020-05-20 17:09:07 -07:00
Tamara Dahlgren
92989fbbfd
tests: check presence not equality for rpath changes (#16637)
Fixes #16636
2020-05-20 18:11:26 +02:00
Adam J. Stewart
cc08070da9
py-scikit-learn: add latest version (#16731) 2020-05-19 20:59:11 -05:00
Christoph Junghans
46ab939249
mantevo: update urls to new website (#16732) 2020-05-19 16:19:17 -05:00
Andrew W Elble
7fe6c0945a
py-tensorflow-estimator: new version 2.2.0 (#16726) 2020-05-19 14:29:13 -05:00
Hadrien G
9c16a728fd
Add new Acts release (#16718) 2020-05-19 13:16:57 -05:00
Thomas Madlener
7948344bcd
Introduce version 1.0.0 for py-xenv and remove unreleased development release (#16722)
Problems in 0.0.4 should be fixed for 1.0.0
2020-05-19 13:14:45 -05:00
ddeidda
20f2a6c2e8
update URL and sha256 for aws-parallelcluster 2.7.0 (#16717)
Signed-off-by: ddeidda <ddeidda@amazon.com>
2020-05-19 10:58:46 -05:00
Dr. Christian Tacke
63f09a6662
openssl: Be Explicit About perl Usage (#16721)
The openssl build process can use the wrong perl for
various reasons, including:
* Wrong value in PERL env var
* The build process first looks for `perl5`, which the
  spack system does not provide, but some other
  distributions provide it. That way, the build process can
  end up using the wrong perl.

Stop all of these problems by explicitly setting PERL to
the to be used dependency.
2020-05-19 10:58:04 -05:00
darmac
31ab62fb5e
Add new package: http-post (#16678)
* Add new package: http-post

* refine version name
2020-05-19 10:56:52 -05:00
darmac
05aacb584e
Add new package: http-ping (#16675)
* Add new package: http-ping

* refine version name
2020-05-19 10:56:22 -05:00
Scott Wittenburg
b1f1f5dddb Pipelines: Ensure consistent spack version for entire pipeline
Also retry jobs always, as script failure is not confined to only our
spack ci rebuild command exit code.
2020-05-19 09:40:02 -06:00
vvolkl
31ccf80294
[podio] fix root cxxstd dependency (#16708) 2020-05-18 21:52:18 -05:00
darmac
9d766ae1fa
Add new package: http-load (#16676)
* Add new package: http-load

* refine version format

* fix date/version error
2020-05-18 21:41:00 -05:00
darmac
3f6164053d
Add new package: http-get (#16677)
* Add new package: http-get

* refine version name
2020-05-18 21:40:34 -05:00
Greg Becker
84889ef3a3
move source dir to last cmake arg (#16709) 2020-05-18 16:39:13 -07:00
Adam J. Stewart
cf4c48c37e
TensorFlow: add new versions (#16703) 2020-05-18 16:38:37 -05:00
Justin S
294a91b580
r-decipher: new package at 2.12.0 (#16705) 2020-05-18 16:37:06 -05:00
Justin S
d768b34f17
angsd: add 0.933, add misc programs to install (#16669)
* angsd: add 0.933, add misc programs to install

* angsd: add r variant
2020-05-18 16:07:35 -05:00