Commit graph

22342 commits

Author SHA1 Message Date
Swann Perarnau
c1de2e926d
aml: update website, repository, and maintainer (#25140)
AML moved its repository and website during spring 2021.

Signed-off-by: Swann Perarnau <swann@anl.gov>
2021-07-30 11:22:20 +02:00
Axel Huebl
189ff91f25
openPMD-api: add v0.14.0 (#25142)
Add the latest release.
2021-07-30 11:14:19 +02:00
AMD Toolchain Support
bbfaf4e816
quantum-espresso: update patch for AOCC support (#25144)
Co-authored-by: mohan002 <mohbabul@amd.com>
2021-07-30 11:07:57 +02:00
Vanessasaurus
54e8e19a60
adding spack diff command (#22283)
A `spack diff` will take two specs, and then use the spack.solver.asp.SpackSolverSetup to generate
lists of facts about each (e.g., nodes, variants, etc.) and then take a set difference between the
two to show the user the differences.

Example output:

    $ spack diff python@2.7.8 python@3.8.11
     ==> Warning: This interface is subject to change.

     --- python@2.7.8/tsxdi6gl4lihp25qrm4d6nys3nypufbf
     +++ python@3.8.11/yjtseru4nbpllbaxb46q7wfkyxbuvzxx
     @@ variant_value @@
     -  python patches a8c52415a8b03c0e5f28b5d52ae498f7a7e602007db2b9554df28cd5685839b8
     +  python patches 0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87
     @@ version @@
     -  openssl Version(1.0.2u)
     +  openssl Version(1.1.1k)
     -  python Version(2.7.8)
     +  python Version(3.8.11)

Currently this uses diff-like output but we will attempt to improve on this in the future.

One use case for `spack diff` is whenever a user has a disambiguate situation and cannot 
remember how two different installs are different. The command can also output `--json` in
the case of a more analysis type use case where we want to save complete data with all
diffs and the intersection. However, the command is really more intended for a command
line use case, and we likely will have an analyzer more suited to saving data

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-07-30 00:08:38 -07:00
Zack Galbreath
e8f284bf52
ci: automatically prune the broken-specs list (#24809)
When a develop pipeline successfully finishes a `spack install`, check if
the spec that was just built is on the broken-specs list. If so, remove it.
2021-07-29 13:47:10 -06:00
Zack Galbreath
d7771f190f
Catch ConnectionError from CDash reporter (#24818)
* Catch ConnectionError from CDash reporter

Catch ConnectionError when attempting to upload the results of `spack install`
to CDash. This follows in the spirit of #24299. We do not want `spack install`
to exit with a non-zero status when something goes wrong while attempting to
report results to CDash.

* Catch HTTP Error 400 (Bad Request) in relate_cdash_builds()
2021-07-29 13:46:17 -06:00
sknigh
095f327f32
Update sst-elements and dependency packages (#25041)
* sst-elements: add optional support for flashdimmsim, dramsim3 and
  add new packages for each
* sst-dumpi: add version 7.1.0
* sst-core: autotools dependencies are required for all versions
* new package: dtc
* add error message redirect for +dumpi, otf, and otf2: these are not
  currently supported
2021-07-29 11:48:41 -07:00
Itaru Kitayama
a904418270
nest: add v3.0 and v2.20.1, removed previous versions (#24328)
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2021-07-29 10:34:50 +02:00
Massimiliano Culpo
b42b0cd45a
Move build tests from GA to Gitlab (#25120)
Modifications:

- Remove the "build tests" workflow from GitHub Actions
- Setup a similar e2e test on Gitlab

In this way we'll reduce load on GitHub Actions workflows and for e2e tests will
benefit from the buildcache reuse granted by pipelines.
2021-07-29 09:08:32 +02:00
Brian Van Essen
adb507bdd9
Added support for using the Cray LibSci BLAS/LAPACK/ScaLAPACK library. (#25124) 2021-07-28 15:14:58 -07:00
Cyrus Harrison
db00cf24c0
add parmetis variant to conduit (#25127) 2021-07-28 15:09:19 -07:00
Satish Balay
c114cf019d
petsc: update config option logic for locating dependencies (#25074)
Primarily use --with-package-include, --with-package-lib options
(vs. --with-package-dir)
2021-07-28 14:09:54 -07:00
Chris White
7ea94d1103 add more directories to implicit link exclusion 2021-07-28 14:01:16 -07:00
iarspider
ace3753076
re2: addv2021-06-01 and 'shared' variant (#25121)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-28 19:07:12 +02:00
Michael Kuhn
d6cbaee16b
gcc: add v11.2.0 (#25125) 2021-07-28 17:02:40 +00:00
Rémi Lacroix
0d5e1c7db9
libxc: add v5.1.5 (#25123) 2021-07-28 18:42:05 +02:00
Houjun Tang
69464bf36f
pdc: add new package (#24762)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-28 18:31:25 +02:00
Dylan Simon
e3096e94b1
poppler: drop splash patch for 21.07.0 (#25032)
ENABLE_SPLASH configuration has been removed entirely after 21.06 so
patch is no longer necessary after #24931.  (Versions between 0.90.1 and
21.06 will likely still need a patch, and while it's not clear if this
patch is the right one, seems better to leave something in.)
2021-07-28 18:23:56 +02:00
Tim Moon
c9327649c0
nvshmem: set env variables instead of appending (#25095) 2021-07-28 16:07:24 +00:00
Tom Stitt
68f696af64
glvis: add v4.0 (#25045) 2021-07-28 17:51:53 +02:00
downloadico
737936d02c
octopus: add v10.5 (#25068) 2021-07-28 17:47:42 +02:00
Ethan Stam
a7ed20cb92
ParaView: disable VTK_MODULE_USE_EXTERNAL_ParaView_vtkcatalyst to avoid looking for external Catalyst_DIR (#25061) 2021-07-28 17:30:21 +02:00
Glenn Johnson
e29168ad02
gurobi: add v9.1.2 and extend python (#25064)
- add version 9.1.2
- set a license file
- set the license environment variable
- remove the download and license information out of the description so
  it does not show up in environment modules
- extend python and set python version constraints
- build gurobipy to be used in any compatible python, used for more
  extensive computations than the gurobi shell
- remove preexisting PYTHONPATH from gurobi.sh as the shell uses a
  built-in python, which will likely be different from "system" python
- add maintainer
2021-07-28 17:29:32 +02:00
gpotter2
be2e224e75
vtk-m: add conflict with gcc version < 5.0 (#25117) 2021-07-28 16:24:27 +02:00
iarspider
4d96f2668b
py-absl-py: add v0.11.0, v0.12.0, v0.13.0 (#25122) 2021-07-28 15:36:39 +02:00
Sreenivasa Murthy Kolam
ac2444f1d5
fix roctracer references in hip and cleanup code in rocprofiler-dev recipe (#24994)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-07-28 10:36:35 +02:00
Todd Gamblin
6104c31556 bugfix: be careful about GITHUB_BASE_REF in spack style
`spack style` previously used a Travis CI variable to figure out
what the base branch of a PR was, and this was apparently also set
on `develop`.  We switched to `GITHUB_BASE_REF` to support GitHub
Actions, but it looks like this is set to `""` in pushes to develop,
so `spack style` breaks there.

This PR does two things:

- [x] Remove `GITHUB_BASE_REF` knowledge from `spack style` entirely

- [x] Handle `GITHUB_BASE_REF` in style scripts instead, and explicitly
      pass the base ref if it is present, but don't otherwise.

This makes `spack style` *not* dependent on the environment and fixes
handling of the base branch in the right place.
2021-07-27 17:57:17 -07:00
Richarda Butler
af468235e2
AML: Add E4S testsuite stand alone test (#23874) 2021-07-27 17:30:34 -07:00
Todd Gamblin
c8efec0295
spack style: add --root option (#25085)
This adds a `--root` option so that `spack style` can check style for
a spack instance other than its own.

We also change the inner workings of `spack style` so that `--config FILE`
(and similar options for the various tools) options are used. This ensures
that when `spack style` runs, it always uses the config from the running spack,
and does *not* pick up configuration from the external root.

- [x] add `--root` option to `spack style`
- [x] add `--config` (or similar) option when invoking style tools
- [x] add a test that verifies we can check an external instance
2021-07-27 15:09:17 -06:00
Jen Herting
e5bbb6e5b4
[py-lmfit] added version 1.0.2 (#25108)
* [py-lmfit] fixed py-asteval dependency requirements

* [py-lmfit] added version 1.0.2

* [py-lmfit] flake8

* [py-lmfit] 1.0.2 reqires python 3.6

* [py-lmfit] removed newer dependency requirements to be in line with setup.py not requirements.txt
2021-07-27 16:59:45 +00:00
Seth R. Johnson
0a41d4ebb8
pbs: new virtual package (#24568)
* pbs: new virtual package

Some of our clusters have an older installation of
libtorque and tm.h that are *not* from OpenPBS. Using the current
openpbs dependency for openmpi causes concretization errors due to
restrictions on older python and hwloc requirements that don't apply,
even with an external non-buildable installation.
The new 'torque' bundle package allows users to point to that external
installation without problems.

Detailed description of torque by Sergey Kosukhin <skosukhin@gmail.com>
2021-07-27 16:37:00 +00:00
Timo Heister
ca260a3d63
aspect: add v2.3.0 (#25100) 2021-07-27 14:55:29 +02:00
Adam J. Stewart
4eaa5a2635
py-sphinx: add versions up to v4.1.2 (#25092) 2021-07-27 14:54:46 +02:00
Garth N. Wells
aeacc2ff92
pybind11: add v2.7.0 (#25103) 2021-07-27 14:53:02 +02:00
Garth N. Wells
b69c4a66e7
Add xtensor 0.23.10 and xsimd 07.5.0 version (#25105) 2021-07-27 14:52:36 +02:00
Adam J. Stewart
de3fa5556a
serf: add missing libuuid dependency (#25098) 2021-07-27 14:50:59 +02:00
Satish Balay
06a292290e
openmpi: fix cuda dependency (#25101) 2021-07-27 06:41:15 -04:00
Michael Kuhn
1454935edc
libfuse: fix typo (#25104)
This caused both static and shared libraries to be disabled.
2021-07-27 10:28:21 +02:00
Adam J. Stewart
520a465190 Documentation does not build with Sphinx 4.1.2 2021-07-26 13:46:27 -07:00
Adam J. Stewart
ab39f548dc Confirm that the docstring is the issue 2021-07-26 13:46:27 -07:00
Adam J. Stewart
26c3df20f1 Docs: attempt to fix doc tests for sphinx 4.1.2 2021-07-26 13:46:27 -07:00
Adam J. Stewart
6472ee8c76
py-sphinxcontrib-serializinghtml: add new version (#25091) 2021-07-26 15:03:52 -04:00
Adam J. Stewart
8a8aa16f1b
py-sphinxcontrib-htmlhelp: add new version (#25090) 2021-07-26 15:03:38 -04:00
Rémi Lacroix
43c135e3ce
n2p2 package: Add version 2.1.4 (#25031) 2021-07-26 11:16:13 -07:00
Dylan Simon
1c350854f8
intel-oneapi: fix parallel installer errors (#24911)
Intel oneAPI installs maintain a lock file in XDG_RUNTIME_DIR,
which by default exists in /tmp (and is shared by all component
installs). This prevented multiple oneAPI components from being
installed in parallel. This commit sets XDG_RUNTIME_DIR to exist
within Spack's installation Stage, so allows multiple components
to be installed at the same time.
2021-07-26 10:39:35 -07:00
tilne
98549ddbe5
aws-parallelcluster: add v2.11.1 (#25089)
* aws-parallelcluster: update maintainers list

Signed-off-by: Tim Lane <tilne@amazon.com>

* aws-parallelcluster: add v2.11.1

Signed-off-by: Tim Lane <tilne@amazon.com>
2021-07-26 10:37:15 -05:00
Thomas Madlener
4a19741a36
yoda: only depend on root if explicitly desired (#25087) 2021-07-26 13:50:00 +02:00
Erik Schnetter
cef3a2a6ee
asdf-cxx: require a particular version of yaml-cpp (#24988) 2021-07-26 10:28:02 +02:00
Harmen Stoppels
c912911d0e
roc-tracer: remove py-setuptools since it is not used (#25010) 2021-07-26 10:27:33 +02:00
Tamara Dahlgren
6d30299d80
eigenexa: update stand-alone tests to use test stage work directory (#24129) 2021-07-26 10:25:36 +02:00