Commit graph

22342 commits

Author SHA1 Message Date
Gabriel Rockefeller
821769c95e
eospac: add patch to fix selection of compiler flags (#21626)
Patch eospac's Makefile.-linux-gnu.hashes to consider only `$(notdir
$(F90))` when constructing a key to look up compiler flags in the
_F90-CPUINFO_COMP_FLAGS associative array.

This patch was accepted into eospac itself after the release of
6.4.2beta, so apply it only to 6.4.2beta and earlier releases.
2021-03-11 01:47:13 +00:00
Benjamin Tovar
f346db83ac
cctools: add v7.2.1 (#22193) 2021-03-10 21:48:29 +00:00
David Pape
f73182fd98
gearshifft: fix patch, add support for mkl and rocm (#22195)
- Fix faulty patch
- Only use GEARSHIFFT_BACKEND_FFTW_PTHREADS if ~openmp
- Explicitly disable float16 support
- Use correct minimum required Boost version
- Add variants for Intel MKL and ROCm rocfft
2021-03-10 21:03:06 +00:00
Scott Wittenburg
7b97fe206b
Pipelines: Fix issue that allowed failing jobs to pass (#22199)
This is a workaround for an issue with how "spack install" is invoked from within "spack ci rebuild".  The fact that we don't get an exception or even the actual returncode when using the object returned by spack.util.executable.which('spack') to install the target spec means we get no indication of failures about the install command itself.  Instead we rely on the subsequent buildcache creation failure to fail the job.
2021-03-10 11:11:30 -08:00
Michael Kuhn
43473995ad
meson: apply rpath patch for current versions (#22216)
meson now only selectively strips rpaths but can still strip required
ones (like glib's pcre dependency).
2021-03-10 18:42:39 +00:00
darmac
d2ce4b565c
vigra: add master branch (#22037) 2021-03-10 17:57:35 +00:00
Danny McClanahan
f0275e84ad
fix setup-env.sh on older linux zsh (#21721) 2021-03-10 09:44:50 -08:00
darmac
05dfd94ed7
haveged: new package at v1.9.13 (#22127) 2021-03-10 17:36:27 +00:00
Michael Kuhn
c65e660fbe
gdk-pixbuf: add v2.42.2 (#22215) 2021-03-10 16:44:15 +00:00
Michael Kuhn
ed4a468941
gcc: fix nvptx conflict (#22214)
In the past, we only had the binutils variant, which included the
bootstrapping flag. Now that we have a separate bootstrap variant, fix
the nvptx conflict accordingly.
2021-03-10 14:52:40 +00:00
darmac
df92f73c72
mii: add v1.0.4 (#21754)
mii: 1.0.3 and 1.0.2 is deprecated, and v1.0.4 can replace them safely
2021-03-10 14:22:21 +00:00
h-denpo
fc15f85986
gearshifft: add v0.4.0, remove v0.2.1-lw (#21437)
Changed maintainer

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-03-10 11:00:36 +01:00
Andrew W Elble
81e3978759
gnutls: add v3.6.15 (#22192) 2021-03-10 10:53:35 +01:00
Andrew W Elble
f7c234f14c
salmon: add v1.4.0 (#22201)
devendored (most) dependencies, added missing dependencies.
added resources and bypassed external fetching.
2021-03-10 10:30:03 +01:00
Paul Kuberry
d2e759e614
compadre: add new package (#22119) 2021-03-10 10:25:59 +01:00
h-denpo
8849312e68
pocl: updated llvm dependency to require not having flang (#22190)
depends_on("llvm +clang +shared_libs -flang @6.0:11.0", when="@1.6")
2021-03-10 10:25:10 +01:00
Tomoyasu Nojiri
8de96cde08
lxc: fix install error (#22206) 2021-03-10 10:18:34 +01:00
Tomoyasu Nojiri
114bc95526
rsyslog: fix install error (#22207) 2021-03-10 10:17:50 +01:00
Tomoyasu Nojiri
6da24dee91
satsuma2: fix install error (#22208) 2021-03-10 10:16:59 +01:00
Tomoyasu Nojiri
8ff898a95e
warpx: add libs attribute to fix build on aarch64 (#22072)
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-03-10 09:13:44 +00:00
Axel Huebl
8c613fadf0
BLAS++: OpenMP for AppleClang (#22211)
We need to install OpenMP for Apple's Clang.
2021-03-10 10:12:04 +01:00
m-shunji
55c1e76408
abinit: updated patch for Fujitsu compilers (#22009) 2021-03-10 09:58:38 +01:00
eugeneswalker
1492461b8e
netcdf-c@4.7.3:4.7.4 patch detection of pnetcdf for spectrum-mpi (#22180) 2021-03-09 15:11:49 -08:00
Fabian Brandt
3006da8197
Bump version libnetworkit/networkit 8.0 -> 8.1 (#22194)
Co-authored-by: FBT <fabian.brandt-tumescheit@hu-berlin.de>
2021-03-09 13:40:03 -07:00
eugeneswalker
d001a8945a
nalu-wind: add cuda variant (#22184) 2021-03-09 14:19:59 -06:00
Vasileios Karakasis
efecb22845
ReFrame 3.5.0 recipe (#22196) 2021-03-09 20:12:39 +01:00
Paul Kuberry
303230fe7f
Add pthread variant to kokkos-kernels (#22120) 2021-03-09 06:36:21 -07:00
Evan Felix
4d1d435330
Pacifica spack integration work (#20485)
* Add intel cluster package update2 for 2020

* add pacifica cli tools, and pager

* remove boilerplate code

* update flake8 lints

* update flake8 lint, missed one

* add a description for pager

* Shorten a line

* Remove whitespace

* check on dependencies and move urls to proper place

* Remove import package as it seems it is not required

* add requests to the uploader config

* remove blank Line

* change to build and run for packages

* add run and build to the packages

* move from url method to pypi method

* adjust requirements based on feedback from adamjstewart

* remove python 3 requirement, and add setuptools-scm

* remove dependence on python

Co-authored-by: Evan Felix <evan.felix@pnnl.gov>
2021-03-09 13:13:51 +00:00
Andrew W Elble
1fa16c1b9b
kicad: add v5.1.9 (#22123)
ngspice to v34
2021-03-09 09:45:45 +01:00
darmac
26e73e848d
iptraf-ng: new package at v1.2.1 (#22155) 2021-03-09 09:38:49 +01:00
darmac
2ba00262e5
hw-probe: new package at v1.5 (#22156) 2021-03-09 09:37:52 +01:00
darmac
bf4c4e9b32
ike-scan: new package at v1.9 (#22160) 2021-03-09 09:36:13 +01:00
darmac
4e185d48d1
libmacaroons: new package at v0.3.0 (#22142) 2021-03-09 09:32:35 +01:00
Adam Moody
d6fbf8ad57
scr: require dtcmp, switch from /tmp to /dev/shm (#22073) 2021-03-08 17:22:47 -08:00
a-saitoh-fj
8395df6b5b
DSQSS: Add test function, and Continuation of # 21666. (#22103) 2021-03-08 17:12:25 -08:00
Harmen Stoppels
1659beb220
Fix spack graph when deptypes are filtered (#22121) 2021-03-08 16:47:00 -08:00
Glenn Johnson
ccc7ed0af9
Add --vanilla flag to r build system (#22166)
Unlike the other commands of the `R CMD` interface, the `INSTALL` command
will read `Renviron` files. This can potentially break builds of r-
packages, depending on what is set in the `Renviron` file. This PR adds
the `--vanilla` flag to ensure that neither `Rprofile` nor `Renviron` files
are read during Spack builds of r- packages.
2021-03-08 15:53:12 -07:00
Martin Pokorny
68d5f348e5
casacore: add v3.4.0 (#22163) 2021-03-08 21:26:44 +01:00
James Elliott
126ab70420
Update Cmake 3.19.x to support crayftn preprocessing (cce 11+) (#22122)
Cray added necessary functionality for CMake to support fortran preprocessing using crayftn. This patch is necessary for the current release of cmake (3.19), with this patched expected to be in the 3.20 release of Cmake. The included patch is from kitware.

see https://gitlab.kitware.com/cmake/cmake/-/merge_requests/5882

Co-authored-by: James Elliott <jjellio@sandia.govv>
2021-03-08 10:54:46 -08:00
Phil Carns
3d17936866
v0.9.1 release of mochi-margo (#22164) 2021-03-08 11:22:03 -07:00
Thomas Madlener
bc40c3af91
Add latest versions for lcio and sio (#22173) 2021-03-08 10:17:55 -08:00
David Poliakoff
a52beca2cf
Tuning variant for Kokkos packages (#22176) 2021-03-08 10:13:07 -08:00
Andrew W Elble
16adb5dd8f
py-tensorflow-probability: run install from correct working dir (#22175) 2021-03-08 09:58:08 -06:00
Kai Torben Ohlhus
b642871b23
suite-sparse: add v5.9.0 (#22168)
Update homepage URL and see release notes:

- https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.9.0
2021-03-08 10:37:08 +00:00
Tomoyasu Nojiri
c25a723d74
kmod: add --with-bashcompletiondir option (#22167) 2021-03-08 10:21:15 +01:00
Axel Huebl
90ace2d0ec
catch2: add v2.13.4 (#22170)
Add the latest release of Catch2.
2021-03-08 10:20:21 +01:00
Tomoyasu Nojiri
2648fe902d
bpp-seq: add v2.4.1 (#22171) 2021-03-08 10:19:54 +01:00
Tomoyasu Nojiri
39e30520ce
bpp-core: add v2.4.1 (#22172) 2021-03-08 10:19:19 +01:00
Andrew W Elble
a0b5dcca3c
py-tensorflow-probability: new package (#22165)
* py-tensorflow-probability: new package

* setuptools dep, quoting syntax
2021-03-08 02:23:49 +00:00
Todd Gamblin
8d3272f82d
spack python: add --path option (#22006)
This adds a `--path` option to `spack python` that shows the `python`
interpreter that Spack is using.

e.g.:

```console
$ spack python --path
/Users/gamblin2/src/spack/var/spack/environments/default/.spack-env/view/bin/python
```

This is useful for debugging, and we can ask users to run it to
understand what python Spack is picking up via preferences in `bin/spack`
and via the `SPACK_PYTHON` environment variable introduced in #21222.
2021-03-07 13:37:26 -08:00