Commit graph

5267 commits

Author SHA1 Message Date
Massimiliano Culpo
8d118104c7
Fix typos when forwarding arguments to traverse_edges (#29261)
A few calls use `deptypes=...` instead of `deptype=...`
2022-03-02 08:43:26 +01:00
Tamara Dahlgren
b20df12d09
test_env_install_two_specs_same_dep: properly check installed specs (#29222) 2022-03-01 10:35:14 +01:00
Scott Wittenburg
b082c33c85
commands: Propgate command return value as exit code (#29223) 2022-02-25 10:49:56 -08:00
Tamara Dahlgren
0b4f40ab79
Testing: Summarize test results and add verbose output (#28700) 2022-02-23 18:36:21 -08:00
Massimiliano Culpo
1ddad522a4
Move early exit for setup only argument (#29041)
See https://github.com/spack/spack/pull/28468/files#r809156986

If we exit before generating the:

 error("Dependencies must have compatible OS's with their dependents").
 ...

facts we'll output a problem that is effectively
different by the one solved by clingo.
2022-02-23 01:46:52 -08:00
Tom Scogland
a9ba40164a
Checksum match (#28989)
* cmd/checksum: prefer url matching url_from_version

This is a minimal change toward getting the right archive from places
like github.  The heuristic is:

* if an archive url exists, take its version
* generate a url from the package with pkg.url_from_version
* if they match
  * stop considering other URLs for this version
  * otherwise, continue replacing the url for the version

I doubt this will always work, but it should address a variety of
versions of this bug.  A good test right now is `spack checksum gh`,
which checksums macos binaries without this, and the correct source
packages with it.

fixes #15985
related to #14129
related to #13940

* add heuristics to help create as well

Since create can't rely on an existing package, this commit adds another
pair of heuristics:
1. if the current version is a specifically listed archive, don't
   replace it
2. if the current url matches the result of applying
   `spack.url.substitute_version(a, ver)` for any a in archive_urls,
   prefer it and don't replace it

fixes #13940

* clean up style and a lingering debug import

* ok flake8, you got me

* document reference_package argument

* Update lib/spack/spack/util/web.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* try to appease sphinx

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-23 00:55:59 +00:00
Todd Gamblin
36b0730fac
Add spack --bootstrap option for accessing bootstrap store (#25601)
We can see what is in the bootstrap store with `spack find -b`, and you can clean it with `spack
clean -b`, but we can't do much else with it, and if there are bootstrap issues they can be hard to
debug.

We already have `spack --mock`, which allows you to swap in the mock packages from the command
line. This PR introduces `spack -b` / `spack --bootstrap`, which runs all of spack with
`ensure_bootstrap_configuration()` set. This means that you can run `spack -b find`, `spack -b
install`, `spack -b spec`, etc. to see what *would* happen with bootstrap configuration, to remove
specific bootstrap packages, etc. This will hopefully make developers' lives easier as they deal
with bootstrap packages.

This PR also uses a `nullcontext` context manager. `nullcontext` has been implemented in several
other places in Spack, and this PR consolidates them to `llnl.util.lang`, with a note that we can
delete the function if we ever reqyire a new enough Python.

- [x] introduce `spack --bootstrap` option
- [x] consolidated all `nullcontext` usages to `llnl.util.lang`
2022-02-22 12:35:34 -07:00
Todd Gamblin
7912a8e90b
bugfix: Not all concrete versions on the CLI should be considered real (#28620)
Some "concrete" versions on the command line, e.g. `qt@5` are really
meant to satisfy some actual concrete version from a package. We should
only assume the user is introducing a new, unknown version on the CLI
if we, well, don't know of any version that satisfies the user's
request.  So, if we know about `5.11.1` and `5.11.3` and they ask for
`5.11.2`, we'd ask the solver to consider `5.11.2` as a solution.  If
they just ask for `5`, though, `5.11.1` or `5.11.3` are fine solutions,
as they satisfy `@5`, so use them.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-02-21 11:46:37 -08:00
Alberto Invernizzi
b8d042273a
Bring back cuda@11.4.0 conflicts for GCC and clang; add 11.4.3:11.4.4 (#29076)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-02-21 20:28:56 +01:00
Massimiliano Culpo
7fd94fc4bc
spack external find: change default behavior (#29031)
See https://github.com/spack/spack/issues/25353#issuecomment-1041868116

This commit changes the default behavior of
```
$ spack external find
```
from searching all the possible packages Spack knows about to
search only for the ones tagged as being a "build-tool".

It also introduces a `--all` option to restore the old behavior.
2022-02-18 11:51:01 -07:00
Seth R. Johnson
6c61c2695a
darwin: robust macos version detection (#28991)
Prefer `sw_vers` to `platform.mac_ver`. In anaconda3 installation, for example, the latter reports 10.16 on Monterey -- I think this is affected by how and where the python instance was built.

Use MACOSX_DEPLOYMENT_TARGET if present to override the operating system choice.
2022-02-17 20:50:41 -07:00
Scott Wittenburg
38643dcd7e
gitlab: Propagate stack name to downstream build jobs (#29019)
It will be useful for metrics gathering and possibly debugging to
have this environment variable available in the runner pods that
do the actual rebuilds.
2022-02-17 15:36:48 -05:00
Tamara Dahlgren
fefe65a35b
Testing: optionally run tests on externally installed packages (#28701)
Since Spack does not install external packages, this commit skips them by
default when running stand-alone tests. The assumption is that such packages
have likely undergone an acceptance test process. 

However, the tests can be run against installed externals using 
```
% spack test run --externals ...
```
2022-02-17 19:47:42 +01:00
Harmen Stoppels
d93f9b82ac
Reduce verbosity of patches=... variant (#29015)
* reduce verbosity of patches=... variant

* Special-case prefix-matches for satisfies of patches variant
2022-02-17 11:06:32 +01:00
Massimiliano Culpo
fa132614e0
ASP-based solver: don't sort when defining variant possible values (#29013)
fixes #28260

Since we iterate over different variants from many packages, the variant 
values may have types which are not comparable, which causes errors 
at runtime. This is not a real issue though, since we don't need the facts
to be ordered. Thus, to avoid needless sorting, the sorted function has 
been removed and a comment has been added to tip any developer that
might need to inspect these clauses for debugging to add back sorting 
on the first two items only.

It's kind of difficult to add a test for this, since the error depends on 
whether Python sorting algorithm ever needs to compare the third 
value of a tuple being ordered.
2022-02-17 08:50:50 +01:00
Tom Scogland
8f5fcc6e95
extensions: allow multiple "extends" directives (#28853)
* extensions: allow multiple "extends" directives

This will allow multiple extends directives in a package as long as only one of
them is selected as a dependency in the concrete spec.

* document the option to have multiple extends
2022-02-16 21:23:12 +00:00
Todd Gamblin
b1ff9c05bc concretizer: refactor argument passing for reuse
Reuse previously was a very invasive change that required parameters to be added to all
the methods that called `concretize()` on a `Spec` object. With the addition of
concretizer configuration, we can use the config system to simplify this argument
passing and keep the code cleaner.

We decided that concretizer config options should be read at `Solver` instantiation
time, and if config changes between instnatiation of a particular solver and
`solve()` invocation, the `Solver` should use the settings from `__init__()`.

- [x] remove `reuse` keyword argument from most concretize functions
- [x] refactor usages to use `spack.config.override("concretizer:reuse", True)`
- [x] rework argument passing in `Solver` so that parameters are set from config
      at instantiation time
2022-02-16 10:17:18 -08:00
Todd Gamblin
d33973df6c docs: add section on concretizer configuration
* Document `concretizer.yaml`, `--reuse`, and `--fresh`.
2022-02-16 10:17:18 -08:00
Todd Gamblin
a2b8e0c3e9 commands: refactor --reuse handling to use config
`--reuse` was previously handled individually by each command that
needed it. We are growing more concretization options, and they'll
need their own section for commands that support them.

Now there are two concretization options:

* `--reuse`: Attempt to reuse packages from installs and buildcaches.
* `--fresh`: Opposite of reuse -- traditional spack install.

To handle thes, this PR adds a `ConfigSetAction` for `argparse`, so
that you can write argparse code like this:

```
     subgroup.add_argument(
        '--reuse', action=ConfigSetAction, dest="concretizer:reuse",
        const=True, default=None,
        help='reuse installed dependencies/buildcaches when possible'
     )
```

With this, you don't need to add logic to pull the argument out and
handle it; the `ConfigSetAction` just does it for you. This can probably
be used to clean up some other commands later, as well.

Code that was previously passing `reuse=True` around everywhere has
been refactored to use config, and config is set from the CLI using
a new `add_concretizer_args()` function in `spack.cmd.common.arguments`.

- [x] Add `ConfigSetAction` to simplify concretizer config on the CLI
- [x] Refactor code so that it does not pass `reuse=True` to every function.
- [x] Refactor commands to use `add_concretizer_args()` and to pass
      concretizer config using the config system.
2022-02-16 10:17:18 -08:00
Todd Gamblin
f155de7462 tests: consolidate mock scope creation logic in conftest.py
Config scopes were different for `config` and `mutable_config`,
and `mutable_config` did not have a command line scope.

- [x] Fix by consolidating the creation logic for the two fixtures.
2022-02-16 10:17:18 -08:00
Todd Gamblin
800ed16e7a config: add a new concretizer config section
The concretizer is going to grow to have many more configuration,
and we really need some structured config for that.

* We have the `config:concretizer` option that chooses the solver,
  but extending that is awkward (we'd need to replace a string with
  a `dict`) and the solver choice will be deprecated eventually.

* We have the `concretization` option in environments, but it's
  not a top-level config section -- it's just for environments,
  and it also only admits a string right now.

To avoid overlapping with either of these and to allow the most
extensibility in the future, this adds a new `concretizer` config
section that can be used in and outside of environments. There
is only one option right now: `reuse`.  This can expand to include
other options later.

Likely, we will soon deprecate `config:concretizer` and warn when
the user doesn't use `clingo`, and we will eventually (sometime later)
move the `together` / `separately` options from `concretization` into
the top-level `concretizer` section.

This commit just adds the new section and schema. Fully wiring it
up is TBD.
2022-02-16 10:17:18 -08:00
Todd Gamblin
1903e45eec refactor: convert spack.solver.asp.solve() to a class
The solver has a lot of configuration associated with it. Rather
than adding arguments to everything, we should encapsulate that
in a class. This is the start of that work; it replaces `solve()`
and its kwargs with a class and properties.
2022-02-16 10:17:18 -08:00
Mark W. Krentel
87a3b72ef0
Add 'stable' to the list of infinity version names. (#28772)
* Add 'stable' to the list of infinity version names.
Rename libunwind 1.5-head to 1.5-stable.

* Add stable to the infinite version list in packaging_guide.rst.
2022-02-16 09:08:51 -08:00
Adam J. Stewart
3c1b2c0fc9
find_libraries: search for both .so and .dylib on macOS (#28924) 2022-02-16 14:07:44 +01:00
Stephen Sachs
79f22423b8
intel compiler: fix link time error with LLVMgold.so (#28731)
The Intel compiler will, at link time, call `ld -plugin LLVMgold.so`, which
expects libraries like `libimfo.so` to be found either in the `LD_LIBRARY_PATH` or
in `LLVMgold.so`s RPATH.

As `LLVMgold.so` already uses RUNPATH, I used that to extend this to the
necessary library locations.

This PR should fix issues:
https://github.com/spack/spack/issues/10308
https://github.com/spack/spack/issues/18606
https://github.com/spack/spack/issues/17100
https://github.com/spack/spack/issues/21237
https://github.com/spack/spack/issues/4261

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-02-15 17:47:29 +00:00
Harmen Stoppels
cebe4fdf1d
Make spack -e [env] spec show environment root specs (#25941) 2022-02-15 09:42:05 -08:00
Harmen Stoppels
55996d3ad4
Unalias despacktivate only when alias exists (#28939) 2022-02-15 16:21:19 +01:00
Seth R. Johnson
08cad7d0ee
darwin: make sure MACOSX_DEPLOYMENT_TARGET has a minor component (#28926) 2022-02-15 05:50:22 +00:00
Danny McClanahan
e8838109d8
move typing_extensions.py back into typing.py =\ (#28549) 2022-02-11 09:52:01 -08:00
Seth R. Johnson
2fa6cd6d23
macOS: always set MACOSX_DEPLOYMENT_TARGET (#28797)
* core: Make platform environment an instance not class method

In preparation for accessing data constructed in __init__.

* macos: set consistent macosx deployment target

This should silence numerous warnings from mixed gcc/macos toolchains.

* perl: prevent too-new deployment target version

```
*** Unexpected MACOSX_DEPLOYMENT_TARGET=11
***
*** Please either set it to a valid macOS version number (e.g., 10.15) or to empty.
```

* Stylin'

* Add deployment target overrides to failing autoconf packages

* Move configure workaround to base autoconf package

This reverts commit 3c119eaf8b4fb37c943d503beacf5ad2aa513d4c.

* Stylin'

* macos: add utility functions for SDK

These aren't yet used but should probably be added to spack debug
report.
2022-02-10 23:22:30 +00:00
Massimiliano Culpo
e6e109cbc5
ASP-based solver: reduce input facts and add heuristic (#28848)
* Remove node_target_satisfies/3 in favor of target_satisfies/2

When emitting input facts we don't need to couple target with
packages, but we can emit fewer facts independently and let
the grounder combine them.

* Remove compiler_version_satisfies/4 in favor of compiler_version_satisfies/3

When emitting input facts we don't need to couple compilers with
packages, but we can emit fewer facts independently and let
the grounder combine them.

* Introduce heuristic in the ASP-program

With heuristic we can drive clingo to make better
initial guesses, which lead to fewer choices and
conflicts in the overall solve
2022-02-10 11:37:10 -08:00
Seth R. Johnson
92b26257f4
Fix CMakePackage.define for libs/headers (#28838)
The 'libs' property returned by a spec is not a list nor tuple.

Closes #28836.
2022-02-10 13:43:22 +00:00
Greg Becker
130354b867
spack audit: fix spurious failures for target/platform conflicts (#28860) 2022-02-10 09:10:23 +01:00
Tamara Dahlgren
36ef59bc67
Tests: move has_test_method to spack.package (#28813) 2022-02-09 22:27:48 -08:00
Massimiliano Culpo
549c785227
Detecting "Cray" as "linux" during bootstrap (#28726)
* bootstrap: avoid detecting "Cray" and treat the platform as "linux"

* bootstrap: create a proper context manager to disable cray
2022-02-09 17:41:11 -05:00
Stephen Sachs
14902a5821
intel-mkl: BLACS with intel-oneapi-mpi (#28476)
Identify the correct BLACS libaries when `intel-oneapi-mpi` is used.
2022-02-07 13:26:20 +01:00
Jordan Galby
37ae4c0fdb
Support config variables in config.yaml extensions paths (#17772) 2022-02-07 11:40:52 +01:00
Harmen Stoppels
73077f3a67
database: fix reindex with uninstalled deps (#28764)
* Fix reindex with uninstalled deps

When a prefix of a dep is removed, and the db is reindexed, it is added
through the dependent, but until now it incorrectly listed the spec as
'installed'.

There was also some questionable behavior in the db when the same spec
was added multiple times, it would always be marked installed.

* Always reserve path

* Only add installed spec's prefixes to install prefixes set

* Improve warning, and ensure ensure only ensures

* test: reindex with every file system remnant removed except for the old index; it should give a database with nothing installed, including records with installed==False,external==False,ref_count==0,explicit=True, and these should be removable from the database
2022-02-04 19:31:39 +00:00
Massimiliano Culpo
5881a03408
Use Spec.constrain to construct spec lists for stacks (#28783)
* stacks: add regression tests for matrix expansion

* Use constrain semantics to construct spec lists for stacks

* Fix semantics for constraining an anonymous spec. Add tests
2022-02-04 19:17:23 +00:00
Massimiliano Culpo
cd04109e17
Add a "sticky" property to variants (#28630)
* Add sticky variants

* Add unit tests for sticky variants

* Add documentation for sticky variants

* Revert "Revert 19736 because conflicts are avoided by clingo by default (#26721)"

This reverts commit 33ef7d57c1.

* Add stickiness to "allow-unsupported-compiler"
2022-02-02 10:05:24 -08:00
Harmen Stoppels
b93b64ca67
TermStatusLine: fix python 2.7 and add test (#28715)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-02-01 21:59:29 +01:00
Massimiliano Culpo
bc06c1206d
macholib, altgraph: update vendored dependency (#28664) 2022-01-28 10:55:12 -08:00
Massimiliano Culpo
3cf5df7e3b
Ensure "spack unit-test" can bootstrap clingo (#28572) 2022-01-26 14:19:15 +01:00
Harmen Stoppels
e3d62b2f7b
Print 'Waiting for another process to install x, y, z' in distributed builds (#28535)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-01-26 10:42:08 +01:00
Adam J. Stewart
947c270446
Resource stage: no space before colon (#28560) 2022-01-24 10:01:28 +01:00
Jordan Galby
b526eafa45
Fix spack -C command_line_scope with other flags (#28418)
The option `spack -C` was broken if another flag that touched config was
also set (`spack -C ... -d`, `-c config:...` etc...).
2022-01-23 11:02:13 +01:00
Danny McClanahan
0c2de252f1
introduce llnl.util.compat to remove sys.version_info checks (#21720)
- also split typing.py into typing_extensions and add py2 shims
2022-01-21 12:32:52 -08:00
Bram Veenboer
bd43467cbf
CUDA: add v11.6.0 (#28439) 2022-01-21 11:08:20 +00:00
Danny McClanahan
645b40b249
add six.raise_from() to preserve exception traceback (#28532)
* add six.raise_from() to preserve exception traceback

* add tests for code coverage
2022-01-21 00:24:12 -08:00
Adam J. Stewart
22426f17d1
SIPPackage: fix build system (#28447) 2022-01-19 12:35:46 +01:00