Commit graph

4095 commits

Author SHA1 Message Date
Michael Kuhn
8c1329958c
Hotfix for config singleton initialization (#17263)
Fixes #17262
2020-08-10 07:48:33 +02:00
Todd Gamblin
7c9c486d07
deptypes: move deptype formatting code from Spec.format to dependency.py (#17843)
- This simplifies Spec.format somewhat
- Makes code to generate deptype strings (e.g., '[blrt]') reusable
2020-08-09 15:33:31 -07:00
Tomoki, Karatsu
c83236d3a4
Fujitsu compiler: Accept alphabet as version. (#17890)
* Fujitsu compiler: Accept alphabet as version.

* Fujitsu copiler: Updated test pattern.
2020-08-07 09:06:22 -05:00
Todd Gamblin
9dbe1d7776
bugfix: fix spack -V with releases/latest and shallow clones (#17884)
`spack -V` stopped working when we added the `releases/latest` tag to
track the most recent release. It started just reporting the version,
even on a `develop` checkout. We need to tell it to *only* search for
tags that start with `v`, so that it will ignore `releases/latest`.

`spack -V` also would print out unwanted git eror output on a shallow
clone.

- [x] add `--match 'v*'` to `git describe` arguments
- [x] route error output to `os.devnull`
2020-08-05 17:01:18 -07:00
Harmen Stoppels
c07102ac9f
Fix typo: yaml -> json (#17854) 2020-08-03 23:11:41 -05:00
Harmen Stoppels
827ca72c26
Fix docs about containers on cray (#17431)
* For detecting Cray: CRAYPE_VERSION is not used, but MODULEPATH

* Fix typo and write Cray with a capital
2020-08-03 16:16:18 -07:00
Patrick Gartung
33116d730d
Buildcache create: change NoOverwriteException back to a warning as in v0.14 (#17832)
* Change buildcache create `NoOverwriteException` back to a warning.
2020-08-02 13:52:15 -07:00
Patrick Gartung
f29dd48101 Add bindist tests for macOS. 2020-08-02 13:51:14 -07:00
Todd Gamblin
ff27233e30 bugfix: fix spack buildcache list --allarch
`spack buildcache list` was trying to construct an `Arch` object and
compare it to `arch_for_spec(<spec>)`. for each spec in the buildcache.
`Arch` objects are only intended to be constructed for the machine they
describe. The `ArchSpec` object (part of the `Spec`) is the descriptor
that lets us talk about architectures anywhere.

- [x] Modify `spack buildcache list` and `spack buildcache install` to
      filter with `Spec` matching instead of using `Arch`.
2020-08-01 08:36:12 -07:00
Todd Gamblin
0c48f0a15d architecture: make it easier to get a Spec for the default arch
- [x] Make it easier to get a `Spec` with a proper `ArchSpec` from an
      `Arch` object via new `Arch.to_spec()` method.

- [x] Pull `spack.architecture.default_arch()` out of
      `spack.architecture.sys_type()` so we can get an `Arch` instead of
      a string.
2020-08-01 08:36:12 -07:00
Massimiliano Culpo
9dbad500bc
Move Python 2.6 unit tests to Github Actions (#17279)
* Run Python2.6 unit tests on Github Actions
* Skip url tests on Python 2.6 to reduce waiting times
* Skip foreground background tests on Python 2.6 to reduce waiting times
* Removed references to Travis in the documentation
* Deleted install_patchelf.sh (can be installed from repo on CentOS 6)
2020-07-31 15:01:12 -07:00
Todd Gamblin
f24dd29cd2 Merge tag 'v0.15.3' into develop 2020-07-28 02:18:30 -07:00
Todd Gamblin
ae4bbbd241 bump version number for 0.15.3 2020-07-28 02:05:26 -07:00
Greg Becker
24bd9e3039 bugfix: allow relative view paths (#17721)
Relative paths in views have been broken since #17608 or earlier.

- [x] Fix by passing base path of the environment into the `ViewDescriptor`.
      Relative paths are calculated from this path.
2020-07-27 23:48:59 -07:00
Greg Becker
158ee6ac25
bugfix: allow relative view paths (#17721)
Relative paths in views have been broken since #17608 or earlier.

- [x] Fix by passing base path of the environment into the `ViewDescriptor`.
      Relative paths are calculated from this path.
2020-07-27 23:44:56 -07:00
Patrick Gartung
69775fcc07 Relocation of sbang needs to be done when the spack prefix changes even if the install tree has not changed. (#17455) 2020-07-27 11:38:48 -07:00
Patrick Gartung
ce772420dd Relocate rpaths for all binaries, then do text bin replacement if the rpaths still exist after running patchelf/otool (#17418) 2020-07-27 11:28:50 -07:00
Todd Gamblin
8d8cf6201b bugfix: don't redundantly print ChildErrors (#17709)
A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.

- [x] SpackErrors were designed to be printed by the forked process, not
      by the parent, so check if they've already been printed.
- [x] update tests
2020-07-26 22:43:10 -07:00
Todd Gamblin
d351946194
bugfix: don't redundantly print ChildErrors (#17709)
A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.

- [x] SpackErrors were designed to be printed by the forked process, not
      by the parent, so check if they've already been printed.
- [x] update tests
2020-07-26 22:41:55 -07:00
Dennis Klein
0c63c94103
Relax architecture compatibility check (#15972)
* Relax architecture compatibility check
* Add test coverage for the spack.abi module
2020-07-24 10:00:55 -07:00
Adam J. Stewart
f73a3d35a8
spack help --spec: add compiler flags (#17584) 2020-07-24 17:27:43 +02:00
Dmitriy
02f14fd857
Initialize new_specs in Environment.remove() (#17592) 2020-07-24 17:18:40 +02:00
Gregory Becker
63db5499ee Merge tag 'v0.15.2' into develop 2020-07-23 16:55:22 -07:00
Gregory Becker
3534717151 bump version number for 0.15.2 2020-07-23 16:04:08 -07:00
Chuck Atkins
547c71ad78
Revert "Add libglvnd packages/Add EGL support (#14572)" (#17682)
This reverts commit 573489db71.
2020-07-23 17:41:48 -04:00
Greg Becker
ed8250e055 cray: detect shasta os properly (#17467)
Fixes #17299

Cray Shasta systems appear to use an unmodified Sles or other Linux operating system on the backend (like Cray "Cluster" systems and unlike Cray "XC40" systems that use CNL).

This updates the CNL version detection to properly note that this is the underlying OS instead of CNL and delegate to LinuxDistro.
2020-07-23 14:01:09 -07:00
robo-wylder
40cd845479 environment-views: fix bug where missing recipe/repo breaks env commands (#17608)
* environment-views: fix bug where missing recipe/repo breaks env commands

When a recipe or a repo has been removed from Spack and an environment
is active, it causes the view activation to crash Spack before any
commands can be executed. Further, the error message it not at all clear
in explaining the issue.

This forces view regeneration to always start from scratch to avoid the
missing package recipes, and defaults add_view=False in main for views activated
by the `spack -e` option.

* add messages to env status and deactivate

Warn users that a view may be corrupt when deactivating an environment
or checking its status while active. Updated message for activate.

* tests for view checking

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2020-07-23 14:00:42 -07:00
Peter Scheibel
3b45241566 Update fetch order to match iteration order of MirrorReference (#17572) 2020-07-23 14:00:14 -07:00
Tamara Dahlgren
d5b0f85ea3 Reduce output verbosity with debug levels (#17546)
* switch from bool to int debug levels

* Added debug options and changed lock logging to use more detailed values

* Limit installer and timestamp PIDs to standard debug output

* Reduced verbosity of fetch/stage/install output, changing most to debug level 1

* Combine lock log methods; change build process install to debug

* Changed binary cache install messages to extraction messages
2020-07-23 13:59:12 -07:00
eugeneswalker
c6241e72a6 bugfix: use getattr for variation.prefix/suffix (#17669) 2020-07-23 13:56:45 -07:00
Todd Gamblin
f528022a7d bugfix: make compiler preferences slightly saner (#17590)
* bugfix: make compiler preferences slightly saner

This fixes two issues with the way we currently select compilers.

If multiple compilers have the same "id" (os/arch/compiler/version), we
currently prefer them by picking this one with the most supported
languages.  This can have some surprising effects:

* If you have no `gfortran` but you have `gfortran-8`, you can detect
  `clang` that has no configured C compiler -- just `f77` and `f90`. This
  happens frequently on macOS with homebrew. The bug is due to some
  kludginess about the way we detect mixed `clang`/`gfortran`.

* We can prefer suffixed versions of compilers to non-suffixed versions,
  which means we may select `clang-gpu` over `clang` at LLNL. But,
  `clang-gpu` is not actually clang, and it can break builds. We should
  prefer `clang` if it's available.

- [x] prefer compilers that have C compilers and prefer no name variation
  to variation.

* tests: add test for which()
2020-07-23 13:56:18 -07:00
Harmen Stoppels
665a47607e ci pipelines: activate environment without view (#17440) 2020-07-23 13:55:46 -07:00
Todd Gamblin
12958497dc bugfix: ignore Apple's "gcc" by default (#17589)
Apple's gcc is really clang. We previously ignored it by default but
there was a regression in #17110.

Originally we checked for all clang versions with this, but I know of
none other than `gcc` on macos that actually do this, so limiting to
`apple-clang` should be ok.

- [x] Fix check for `apple-clang` in `gcc.py` to use version detection
  from `spack.compilers.apple_clang`
2020-07-23 13:55:11 -07:00
Scott Wittenburg
3a8bc7ffc6 buildcache: list all mirrors even if one fails 2020-07-23 13:54:36 -07:00
Scott Wittenburg
9cbe358f84 Bugfix/install missing compiler from buildcache (#17536)
Ensure compilers installed from buildcache are registered.
2020-07-23 13:53:46 -07:00
Harmen Stoppels
24dff9cf20 Fix security issue in CI (#17545)
The `spack-build-env.txt` file may contains many secrets, but the obvious one is the private signing key in `SPACK_SIGNING_KEY`. This file is nonetheless uploaded as a build artifact to gitlab. For anyone running CI on a public version of Gitlab this is a major security problem. Even for private Gitlab instances it can be very problematic.

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2020-07-23 13:52:09 -07:00
Sajid Ali
5e5cc99147 clear mpicc and friends before each build (#17450)
* clear mpi env vars
2020-07-23 13:48:47 -07:00
Greg Becker
44bc176d08
cray: detect shasta os properly (#17467)
Fixes #17299

Cray Shasta systems appear to use an unmodified Sles or other Linux operating system on the backend (like Cray "Cluster" systems and unlike Cray "XC40" systems that use CNL).

This updates the CNL version detection to properly note that this is the underlying OS instead of CNL and delegate to LinuxDistro.
2020-07-23 13:20:03 -07:00
robo-wylder
3c145b42bc
environment-views: fix bug where missing recipe/repo breaks env commands (#17608)
* environment-views: fix bug where missing recipe/repo breaks env commands

When a recipe or a repo has been removed from Spack and an environment
is active, it causes the view activation to crash Spack before any
commands can be executed. Further, the error message it not at all clear
in explaining the issue.

This forces view regeneration to always start from scratch to avoid the
missing package recipes, and defaults add_view=False in main for views activated
by the `spack -e` option.

* add messages to env status and deactivate

Warn users that a view may be corrupt when deactivating an environment
or checking its status while active. Updated message for activate.

* tests for view checking

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2020-07-23 11:00:58 -07:00
Peter Scheibel
ae82650174
Update fetch order to match iteration order of MirrorReference (#17572) 2020-07-23 10:58:59 -07:00
Greg Becker
e8aa737b09
util.executable.which: handle path separators like /bin/which (#17668)
* util.executable.which: handle path separators like /bin/which

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-07-23 10:54:25 -07:00
Tamara Dahlgren
605c1a76e0
Reduce output verbosity with debug levels (#17546)
* switch from bool to int debug levels

* Added debug options and changed lock logging to use more detailed values

* Limit installer and timestamp PIDs to standard debug output

* Reduced verbosity of fetch/stage/install output, changing most to debug level 1

* Combine lock log methods; change build process install to debug

* Changed binary cache install messages to extraction messages
2020-07-23 00:49:57 -07:00
eugeneswalker
f1eec05d0e
bugfix: use getattr for variation.prefix/suffix (#17669) 2020-07-22 16:15:25 -07:00
Todd Gamblin
0c44a9a504
bugfix: make compiler preferences slightly saner (#17590)
* bugfix: make compiler preferences slightly saner

This fixes two issues with the way we currently select compilers.

If multiple compilers have the same "id" (os/arch/compiler/version), we
currently prefer them by picking this one with the most supported
languages.  This can have some surprising effects:

* If you have no `gfortran` but you have `gfortran-8`, you can detect
  `clang` that has no configured C compiler -- just `f77` and `f90`. This
  happens frequently on macOS with homebrew. The bug is due to some
  kludginess about the way we detect mixed `clang`/`gfortran`.

* We can prefer suffixed versions of compilers to non-suffixed versions,
  which means we may select `clang-gpu` over `clang` at LLNL. But,
  `clang-gpu` is not actually clang, and it can break builds. We should
  prefer `clang` if it's available.

- [x] prefer compilers that have C compilers and prefer no name variation
  to variation.

* tests: add test for which()
2020-07-21 18:48:37 -07:00
Harmen Stoppels
6c69b8a4d4
ci pipelines: activate environment without view (#17440) 2020-07-21 10:15:43 -07:00
Todd Gamblin
897e80e596
bugfix: ignore Apple's "gcc" by default (#17589)
Apple's gcc is really clang. We previously ignored it by default but
there was a regression in #17110.

Originally we checked for all clang versions with this, but I know of
none other than `gcc` on macos that actually do this, so limiting to
`apple-clang` should be ok.

- [x] Fix check for `apple-clang` in `gcc.py` to use version detection
  from `spack.compilers.apple_clang`
2020-07-20 18:24:18 -07:00
Dr. Christian Tacke
bd236918dd
Configuration: allow usage of command-line scopes with environments (#14608)
Spack did not support usage of the `--config-scope` option in
combination with an environment: In `lib/spack/spack/main.py`,
`spack.config.command_line_scopes` is set equal to any config scopes
passed by the `--config-scope` option. However, this is done after
activating an environment. In the process of activating an environment,
the `spack.config.config` singleton is instantiated, so later setting of
`spack.config.command_line_scopes` is ignored.

This commit sets command line scopes before activating an environment to
ensure that they are included in the configuration.

Co-authored-by: Tim Fuller <tjfulle@sandia.gov>
2020-07-20 13:58:06 -07:00
eugeneswalker
96fa6f0c1b
allow GNUPGHOME to come from SPACK_GNUPGHOME in env, if set (#17139) 2020-07-17 13:29:30 -07:00
Scott Wittenburg
b5f82696e2
Bugfix/install missing compiler from buildcache (#17536)
Ensure compilers installed from buildcache are registered.
2020-07-17 11:13:36 -07:00
Scott Wittenburg
ae03782032 buildcache: list all mirrors even if one fails 2020-07-17 10:04:05 -06:00