Since those files currently exist in buildcaches (in S3 buckets) with
potentially different content types, we should be less restrictive in
what content types we accept when attempting to fetch them. This PR
removes the content type constraint so any file with the matching
name will be found.
* Remove duplication of reconstructed RPATHs caused by multiple
identical entries in prefixes dictionary
* Don't rewrite RPATHs if relative RPATHs are unchanged because the
directory layout is unchanged
* Need to check the binary is not a Mach-o binary in a linux package or an ELF binary in a macOS package.
* use sys.platform
* Darwin -> darwin for sys.platform
* Rework spack.util.web.list_url()
list_url() now accepts an optional recursive argument (default: False)
for controlling whether to only return files within the prefix url or to
return all files whose path starts with the prefix url. Allows for the
most effecient implementation for the given prefix url scheme. For
example, only recursive queries are supported for S3 prefixes, so the
returned list is trimmed down if recursive == False, but the native
search is returned as-is when recursive == True. Suitable
implementations for each case are also used for file system URLs.
* Switch to using an explicit index for public keys
Switches to maintaining a build cache's keys under build_cache/_pgp.
Within this directory is an index.json file listing all the available
keys and a <fingerprint>.pub file for each such key.
- Adds spack.binary_distribution.generate_key_index()
- (re)generates a build cache's key index
- Modifies spack.binary_distribution.build_tarball()
- if tarball is signed, automatically pushes the key used for signing
along with the tarball
- if regenerate_index == True, automatically (re)generates the build
cache's key index along with the build cache's package index; as in
spack.binary_distribution.generate_key_index()
- Modifies spack.binary_distribution.get_keys()
- a build cache's key index is now used instead of programmatic
listing
- Adds spack.binary_distribution.push_keys()
- publishes keys from Spack's keyring to a given list of mirrors
- Adds new spack subcommand: spack gpg publish
- publishes keys from Spack's keyring to a given list of mirrors
- Modifies spack.util.gpg.Gpg.signing_keys()
- Accepts optional positional arguments for filtering the set of keys
returned
- Adds spack.util.gpg.Gpg.public_keys()
- As spack.util.gpg.Gpg.signing_keys(), except public keys are
returned
- Modifies spack.util.gpg.Gpg.export_keys()
- Fixes an issue where GnuPG would prompt for user input if trying to
overwrite an existing file
- Modifies spack.util.gpg.Gpg.untrust()
- Fixes an issue where GnuPG would fail for input that were not key
fingerprints
- Modifies spack.util.web.url_exists()
- Fixes an issue where url_exists() would throw instead of returning
False
* rework gpg module/fix error with very long GNUPGHOME dir
* add a shim for functools.cached_property
* handle permission denied error in gpg util
* fix tests/make gpgconf optional if no socket dir is available
Update pipelines documentation to describe how 'tags', 'variables',
'image', 'before_script', 'script', and 'after_script' can be
supplied at the top level, to be used by any of the runner mappings,
and also overridden by any of the runner mappings.
Also show an example of capturing the custom spack SHA at pipeline
generation time, so all jobs are sure to run with the same version
of spack, as a means to illustrate the $env:VARIABLE_NAME syntax.
* Use the config path instead of the basename
* Removing unused variables
Co-authored-by: Greg Becker <becker33@llnl.gov>
* Test
Making sure if there are 2 include config files with the same basename they are both implemented
* Edit test assert
Co-authored-by: Greg Becker <becker33@llnl.gov>
Fixes#18441
When writing an environment, there are cases where the lock file for
the environment may be removed. In this case there was a period
between removing the lock file and writing the new manifest file
where an exception could leave the manifest in its old state (in
which case the lock and manifest would be out of sync).
This adds a context manager which is used to restore the prior lock
file state in cases where the manifest file cannot be written.
This is a special case of overriding since each section is being matched with the current spec.
The trailing ':' for sections with override is now removed when parsing the configuration so the special handling for the modules configuration stopped working but it went unnoticed.
`spack install --yes-to-all` doesn't actually make the build non-interactive,
but that is why people typically use it. This documents that you must also
specify `--no-checksum` for a fully non-interactive build.
* Modules: Deduplicate suffixes but don't sort them.
The suffixes' order is defined by the order in which they appear in the configuration file.
* Modules: Modify tests to use spack_yaml.load_config.
spack_yaml.load_config ensures that the configuration is stored in an ordered manner. Without this change, the behavior of the tests did not match Spack's.
* Modules: Tweak the suffixes test to better catch ordering issues.
* spack config: default modification scope can be an environment
The previous model was that environments are the highest priority config
scope for config reading operations, but were not considered for config
writing operations. Now, the active environment is the highest priority
config scope for both reading and writing operations.
Now spack config add, spack external find and spack compiler set environment
configuration in the environment by default if an environment is active. This is a
change in default behavior for these routines, but better matches the mental
model for an environment taking precedence over the user's default config file.
* add scope argument to 'spack external find' to choose non-default scope
* Increase testing for config modifications on environments
Co-authored-by: Gregory Becker <becker33@llnl.gov>
The 'external_modules' attribute on a Spec, when read from a YAML
configuration file, may contain extra formatting that is lost when
that Spec is written-to/read-from JSON format. This was resulting in
a hashing instability (when the Spec was read back, it would report a
different hash). This commit adds a function which removes the extra
formatting from 'external_modules' as it is passed to the Spec in
__init__ to ensure a consistent hash.
As detailed in https://bugs.python.org/issue33725, starting new
processes with 'fork' on Mac OS is not guaranteed to work in general.
As of Python 3.8 the default process spawning mechanism was changed
to avoid this issue.
Spack depends on the fork-based method to preserve file descriptors
transparently, to preserve global state, and to avoid pickling some
objects. An effort is underway to remove dependence on fork-based
process spawning (see #18205). In the meantime, this allows Spack to
run with Python 3.8 on Mac OS by explicitly choosing to use 'fork'.
Co-authored-by: Peter Josef Scheibel <scheibel1@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
I know that it's just an example, but I was trying to figure out what was going on and it wasn't making sense....
`tput sgr0` resets the terminal state (http://linuxcommand.org/lc3_adv_tput.php) and I can't see any reason to do it twice. Deleting the second occurrence doesn't seem to break the fancy prompt effect.
Compilers can have strange versions, as the version is provided by the user. We know the real version internally, (by querying the compiler) so expose it as a property and use it in places we don't trust the user. Eventually we'll refactor this with compilers as dependencies, but this is the best fix we've got for now.
- [x] Make `real_version` a property and cache the version returned by the compiler
- [x] Use `real_version` to make C++ language level flags work
Restores the fetching progress bar sans failure outputs; restores non-debug reporting of using fetch cache for installed packages; and adds a unit test.
* Add status bar check to test and fetch output when already installed
Some of the feature flags are named differently and clwb is missing on
my i7-1065G7. cascadelake and cannonlake might have similar problems but
I do not have access to those architectures to test.
* make_package_relative: relocate rpaths on cray
* relocate_package: relocate rpaths on cray
* platforms: add `binary_formats` property
We need to know which binary formats are supported on a platform so we
know which types of relocations to try. This adds a list of binary
formats to the platform and removes a bunch of special cases from
`binary_distribution.py`.
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Before this PR, packages.yaml files that contained an
empty "paths" or "modules" attribute were not updated
correctly, since the update function was not reporting
them as changed after the update.
This PR fixes that issue and adds a unit test to
avoid regression.
This commit adds output to the "spack external find"
command to inform users of the result of the operation.
It also fixes a bug introduced in #17804 due to the fact
that a function was not updated to conform to the new
packages.yaml format (_get_predefined_externals).
* Handle uninstalled rootspecs in buildcache
- Do not parse specs / find matching specs when in an environment and no
package string is provided
- Error only when a spec.yaml or spec string are not installed. In an
environment it is fine when the root spec does not exist.
- When iterating through the matched specs, simply skip uninstalled
packages
* Run Python2.6 unit tests on Github Actions
* Skip url tests on Python 2.6 to reduce waiting times
* Skip foreground background tests on Python 2.6 to reduce waiting times
* Removed references to Travis in the documentation
* Deleted install_patchelf.sh (can be installed from repo on CentOS 6)
* Buildcache:
* Try mocking an install of quux, corge and garply using prebuilt binaries
* Put patchelf install after ccache restore
* Add script to install patchelf from source so it can be used on Ubuntu:Trusty which does not have a patchelf pat package. The script will skip building on macOS
* Remove mirror at end of bindist test
* Add patchelf to Ubuntu build env
* Revert mock patchelf package to allow other tests to run.
* Remove depends_on('patchelf', type='build') relying instead on
* Test fixture to ensure patchelf is available.
* Call g++ command to build libraries directly during test build
* Flake8
* Install patchelf in before_install stage using apt unless on Trusty where a build is done.
* Add some symbolic links between packages
* Flake8
* Flake8:
* Update mock packages to write their own source files
* Create the stage because spec search does not create it any longer
* updates after change of list command arguments
* cleanup after merge
* flake8
- [x] Remove references to `master` branch
- [x] Document how release branches are structured
- [x] Document how to make a major release
- [x] Document how to make a point release
- [x] Document how to do work in our release projects
* Move flake8 tests on Github Actions
* Move shell test to Github Actions
* Moved documentation build to Github Action
* Don't run coverage on Python 2.6
Since we get connection errors consistently on Travis
when trying to upload coverage results for Python 2.6,
avoid computing coverage entirely to speed-up tests.
`spack -V` stopped working when we added the `releases/latest` tag to
track the most recent release. It started just reporting the version,
even on a `develop` checkout. We need to tell it to *only* search for
tags that start with `v`, so that it will ignore `releases/latest`.
`spack -V` also would print out unwanted git eror output on a shallow
clone.
- [x] add `--match 'v*'` to `git describe` arguments
- [x] route error output to `os.devnull`
`spack buildcache list` was trying to construct an `Arch` object and
compare it to `arch_for_spec(<spec>)`. for each spec in the buildcache.
`Arch` objects are only intended to be constructed for the machine they
describe. The `ArchSpec` object (part of the `Spec`) is the descriptor
that lets us talk about architectures anywhere.
- [x] Modify `spack buildcache list` and `spack buildcache install` to
filter with `Spec` matching instead of using `Arch`.
- [x] Make it easier to get a `Spec` with a proper `ArchSpec` from an
`Arch` object via new `Arch.to_spec()` method.
- [x] Pull `spack.architecture.default_arch()` out of
`spack.architecture.sys_type()` so we can get an `Arch` instead of
a string.
* Loosen Axom's variants, add shared variant for axom, fix clang/xlf rpath'ing problem on blueos
* Fix flake8
* Add main branch to list of known git branches
The modifications in 193e8333fa
introduced a bug in the loading of compiler modules, since a
function that was expecting a list of string was just getting
a string.
This commit fixes the bug and adds an assertion to verify the
prerequisite of the function.
Packages can implement “detect_version” to support detection
of external instances of a package. This is generally easier
than implementing “determine_spec_details”. The API for
determine_version is similar: for example you can return
“None” to indicate that an executable is not an instance
of a package.
Users may implement a “determine_variants” method for a package.
When doing external detection, executables are grouped by version
and each group results in a single invocation of “determine_variants”
for the associated spec. The method returns a string specifying
the variants for the package. The method may additionally return
a dictionary representing extra attributes for the package.
These will be stored in the spec yaml and can be retrieved
from self.spec.extra_attributes
The Spack GCC package has been updated with an implementation
of “determine_variants” which adds the following extra
attributes to the package: c, cxx, fortran
The YAML config for paths and modules of external packages has
changed: the new format allows a single spec to load multiple
modules. Spack will automatically convert from the old format
when reading the configs (the updates do not add new essential
properties, so this change in Spack is backwards-compatible).
With this update, Spack cannot modify existing configs/environments
without updating them (e.g. “spack config add” will fail if the
configuration is in a format that predates this PR). The user is
prompted to do this explicitly and commands are provided. All
config scopes can be updated at once. Each environment must be
updated one at a time.
`spack -V` stopped working when we added the `releases/latest` tag to
track the most recent release. It started just reporting the version,
even on a `develop` checkout. We need to tell it to *only* search for
tags that start with `v`, so that it will ignore `releases/latest`.
`spack -V` also would print out unwanted git eror output on a shallow
clone.
- [x] add `--match 'v*'` to `git describe` arguments
- [x] route error output to `os.devnull`
`spack buildcache list` was trying to construct an `Arch` object and
compare it to `arch_for_spec(<spec>)`. for each spec in the buildcache.
`Arch` objects are only intended to be constructed for the machine they
describe. The `ArchSpec` object (part of the `Spec`) is the descriptor
that lets us talk about architectures anywhere.
- [x] Modify `spack buildcache list` and `spack buildcache install` to
filter with `Spec` matching instead of using `Arch`.
- [x] Make it easier to get a `Spec` with a proper `ArchSpec` from an
`Arch` object via new `Arch.to_spec()` method.
- [x] Pull `spack.architecture.default_arch()` out of
`spack.architecture.sys_type()` so we can get an `Arch` instead of
a string.
* Run Python2.6 unit tests on Github Actions
* Skip url tests on Python 2.6 to reduce waiting times
* Skip foreground background tests on Python 2.6 to reduce waiting times
* Removed references to Travis in the documentation
* Deleted install_patchelf.sh (can be installed from repo on CentOS 6)
Relative paths in views have been broken since #17608 or earlier.
- [x] Fix by passing base path of the environment into the `ViewDescriptor`.
Relative paths are calculated from this path.
Relative paths in views have been broken since #17608 or earlier.
- [x] Fix by passing base path of the environment into the `ViewDescriptor`.
Relative paths are calculated from this path.
