Commit graph

23383 commits

Author SHA1 Message Date
Martin Aumüller
029b47ad72
embree: add checksums for 3.12.2 & 3.13.1 (#26675)
Includes fix for for dependency ispc: fix build if cc -m32 is not possible
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-20 16:41:18 +02:00
Tamara Dahlgren
cc8b6ca69f
Add --preferred and --latest tospack checksum (#25830) 2021-10-20 13:38:55 +00:00
Adam J. Stewart
f184900b1a
damask: fix maintainer GitHub handle (#26829) 2021-10-20 14:57:13 +02:00
Wouter Deconinck
abc8cfe8fa
cppgsl: branch master is now main (#26834) 2021-10-20 14:56:01 +02:00
Massimiliano Culpo
56209cb114
Reduce verbosity of error messages when concretizing environments (#26843)
With this commit stacktraces of subprocesses are shown only if debug mode is active
2021-10-20 11:30:07 +00:00
Alexander Jaust
26b58701bc
Fix typo in repositories.rst (#26845) 2021-10-20 11:11:17 +00:00
Wouter Deconinck
42a6e1fcee
root: prepend dependent_spec.prefix.include to ROOT_INCLUDE_PATH (#26379)
Spack is not populating CPATH anymore (e3f97b37e6 (diff-259adc895c0b2e8fca42ffb99d8051eec0712c868d12d8da255d32f1663acdc7)), and downstream packages ([gaudi](1aa7758dbb/var/spack/repos/builtin/packages/gaudi/package.py (L116))) have alrady started to include this in their package.py files. Instead of propagating this to all downstream packages, it tries to address the issue at the source.
2021-10-20 09:15:14 +02:00
Massimiliano Culpo
1983d6d9d0
Pipelines: pin importlib-metadata and setuptools-scm versions (#26831)
This will hopefully be a hotfix for the issue with pipelines
in #26813 and #26820
2021-10-19 16:09:40 -07:00
Chris White
b7d94ebc4f
allow camp to use blt package (#26765) 2021-10-19 16:09:15 -07:00
Harmen Stoppels
1b634f05e0
A single process pool is not something to boast about (#26837) 2021-10-19 23:04:52 +00:00
Greg Becker
7dc0ca4ee6
cray architecture detection for zen3/milan (#26827)
* Update cray architecture detection for milan

Update the cray architecture module table with x86-milan -> zen3
Make cray architecture more robust to back off from frontend
architecture to a recent ancestor if necessary. This should make
future cray updates less paingful for users.

Co-authored-by: Gregory Becker <becker33.llnl.gov>
Co-authored-by: Todd Gamblin <gamblin2@llnl.gov>
2021-10-19 21:39:50 +00:00
Kai Germaschewski
501fa6767b
adios2: fix unresolved symbols in 2.6.0 when built with gcc10 (#23871) 2021-10-19 21:09:07 +00:00
Harmen Stoppels
e7c7f44bb6
Reduce verbosity of threaded concretization (#26822)
1. Don't use 16 digits of precision for the seconds, round to 2 digits after the comma
2. Don't print if we don't concretize (i.e. `spack concretize` without `-f` doesn't have to tell me it did nothing in `0.00` seconds)
2021-10-19 18:33:17 +00:00
iarspider
bc99d8a2fd
Update py-zipp (#26819)
* Update py-zipp

* Fix typo
2021-10-19 13:29:32 -05:00
Garth N. Wells
2bfff5338f
py-fenics-ffcx: dependency updates (#26783)
* Update py-fenics-ffcx dependencies

* Relax some version numbering

* Remove stray colon
2021-10-19 13:28:20 -05:00
iarspider
a678a66683
py-setuptools-scm: make py-tomli dependency an open range (#26820) 2021-10-19 16:08:56 +00:00
Massimiliano Culpo
4c082a5357
Relax os constraints in e4s pipelines (#26547) 2021-10-19 10:51:37 -05:00
Massimiliano Culpo
2d45a9d617
Speed-up environment concretization on linux with a process pool (#26264)
* Speed-up environment concretization with a process pool

We can exploit the fact that the environment is concretized
separately and use a pool of processes to concretize it.

* Add module spack.util.parallel

Module includes `pool` and `parallel_map` abstractions,
along with implementation details for both.

* Add a new hash type to pass specs across processes

* Add tty msg with concretization time
2021-10-19 10:09:34 -05:00
Ryan Mast
64a323b22d
spdlog: add v1.9.0, v1.9.1 and v1.9.2 (#26777) 2021-10-19 16:55:36 +02:00
Ryan Mast
f7666f0074
asio: Add versions up to 1.20.0 (#26778) 2021-10-19 16:54:55 +02:00
Ryan Mast
b72723d5d9
cli11: added v2.1.1, v2.1.0 (#26780) 2021-10-19 16:54:33 +02:00
Ryan Mast
65d344b2f8
cli11: disable building the examples (#26781) 2021-10-19 16:53:45 +02:00
Adam J. Stewart
9afc5ba198
py-pandas: add v1.3.4 (#26788) 2021-10-19 16:50:42 +02:00
Christopher Kotfila
ad35251860
Fix trigger and child links in pipeline docs (#26814) 2021-10-19 14:44:36 +00:00
Paul
9eaccf3bbf
Add Go 1.17.2 and 1.16.9 (#26794) 2021-10-19 16:30:59 +02:00
Mark Grondona
bb1833bc8c
flux: update maintainer of flux-core, flux-sched (#26800) 2021-10-19 16:30:33 +02:00
Robert Pavel
c66aa858c2
Made Legion Dependency on Gasnet Tarball Explicit (#26805)
Made legion dependency on a gasnet tarball explicit so as to take
advantage of spack mirrors for the purpose of deploying on machines with
firewalls
2021-10-19 16:28:43 +02:00
Erik Schnetter
4fc8ed10cb
nsimd: add v3.0 (#26806) 2021-10-19 16:27:29 +02:00
Adam J. Stewart
0de8c65a2d
Libtiff: improve compression support (#26809) 2021-10-19 16:17:37 +02:00
genric
42fb34e903
py-xarray: add v0.18.2 (#26811) 2021-10-19 16:15:56 +02:00
iarspider
d6fc914a9b
Update py-importlib-metadata and py-setuptools-scm (#26813) 2021-10-19 16:08:53 +02:00
Massimiliano Culpo
79c92062a8
Gitlab pipelines: use images from the Spack organization (#26796) 2021-10-19 14:38:39 +02:00
Scott Wittenburg
95538de731
Speed up pipeline generation (#26622)
- [x] Stage already concretized specs instead of abstract ones
- [x] Reduce number of network calls by reading naughty list up front
2021-10-18 20:58:02 -07:00
Miguel Dias Costa
d41ddb8a9c
new package: berkeleygw (#21455) 2021-10-18 18:17:58 -07:00
Harmen Stoppels
2b54132b9a
cosma: add new versions and improve package (#24136)
* cosma: add new versions and improve package

* Move method below depends_on's
2021-10-18 18:06:14 -07:00
Todd Gamblin
c5ca0db27f
patches: make re-applied patches idempotent (#26784)
We use POSIX `patch` to apply patches to files when building, but
`patch` by default prompts the user when it looks like a patch
has already been applied. This means that:

1. If a patch lands in upstream and we don't disable it
   in a package, the build will start failing.
2. `spack develop` builds (which keep the stage around) will
   fail the second time you try to use them.

To avoid that, we can run `patch` with `-N` (also called
`--forward`, but the long option is not in POSIX). `-N` causes
`patch` to just ignore patches that have already been applied.
This *almost* makes `patch` idempotent, except that it returns 1
when it detects already applied patches with `-N`, so we have to
look at the output of the command to see if it's safe to ignore
the error.

- [x] Remove non-POSIX `-s` option from `patch` call
- [x] Add `-N` option to `patch`
- [x] Ignore error status when `patch` returns 1 due to `-N`
- [x] Add tests for applying a patch twice and applying a bad patch
- [x] Tweak `spack.util.executable` so that it saves the error that
      *would have been* raised with `fail_on_error=True`. This lets
      us easily re-raise it.

Co-authored-by: Greg Becker <becker33@llnl.gov>
2021-10-18 23:11:42 +00:00
Mickaël Schoentgen
a118e799ae
httpie: add v2.6.0 (#26791)
Signed-off-by: Mickaël Schoentgen <contact@tiger-222.fr>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-18 21:21:08 +00:00
Seth R. Johnson
bf42d3d49b
file and python dependents: add missing dependencies (#26785)
* py-magic: delete redundant package

This package is actually named py-python-magic (since the project itself
is "python-magic").

* New package: libmagic

* Py-python-magic: add required runtime dependency on libmagic and new version

* Py-filemagic: add required runtime dependency

* py-magic: restore and mark as redundant

This reverts commit 4cab7fb69e2c2b8098895bee92aabe5df8b7aaaa.

* file: add implicit dependencies and static variant

Replaces redundant libmagic that I added. Compression headers were previously
being picked up from the system.

* Fix py-python-magic dependency

* Update python version requirements
2021-10-18 21:11:16 +00:00
Miroslav Stoyanov
e0ff44a056
tasmanian: add smoke test (#26763) 2021-10-18 16:09:46 -04:00
Seth R. Johnson
c48b733773
Make macOS installed libraries more relocatable (#26608)
* relocate: call install_name_tool less

* zstd: fix race condition

Multiple times on my mac, trying to install in parallel led to failures
from multiple tasks trying to simultaneously create `$PREFIX/lib`.

* PackageMeta: simplify callback flush

* Relocate: use spack.platforms instead of platform

* Relocate: code improvements

* fix zstd

* Automatically fix rpaths for packages on macOS

* Only change library IDs when the path is already in the rpath

This restores the hardcoded library path for GCC.

* Delete nonexistent rpaths and add more testing

* Relocate: Allow @executable_path and @loader_path
2021-10-18 13:34:16 -04:00
Shahzeb Siddiqui
3c013b5be6
docutils > 0.17 issue with rendering list items in sphinx (#26355)
* downgrade_docutils_version

* invalid version

* Update requirements.txt

* Improve spelling and shorten the reference link

* Update spack.yaml

* update version requirement

* update version to maximum of 0.16

Co-authored-by: bernhardkaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-18 16:55:46 +00:00
Harmen Stoppels
30e8dd95b5
Remove unused exist_errors in installer.py (#26650) 2021-10-18 15:53:51 +02:00
Harmen Stoppels
1e5f7b3542
Don't print error output in the test whether gpgconf works (#26682) 2021-10-18 15:52:53 +02:00
Sreenivasa Murthy Kolam
1156c7d0a9
allow multiple values for tensile_architecture and expand the gpu list for rocm-4.3.1 (#26745) 2021-10-18 08:48:07 +02:00
Xavier Delaruelle
cab17c4ac3
environment-modules: add version 5.0.1 (#26786) 2021-10-18 08:46:57 +02:00
Harmen Stoppels
33ef7d57c1
Revert 19736 because conflicts are avoided by clingo by default (#26721) 2021-10-18 08:41:35 +02:00
Valentin Volkl
9c7e71df34
py-jupytext: add new package (#26732)
* py-jupytext: add new package

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* update jupytext dependencies

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-jupytext: remove py-jupyerlab dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-17 18:51:42 -05:00
Morten Kristensen
03f84fb440
py-vermin: add latest version 1.3.0 (#26787) 2021-10-17 11:46:53 -05:00
Valentin Volkl
d496568ff9
py-gevent: add version 1.5 (#26731)
* py-gevent: add version 1.5

* py-gevent: update dependencies for v1.5.0

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-gevent/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-17 11:07:11 -05:00
Sam Reeve
ba62b691a6
Add ECP tags for CoPA and related packages (#26739)
* Add ECP tags for CoPA (and related) packages

* Update CoPA maintainers
2021-10-17 10:00:28 -04:00