Commit graph

18819 commits

Author SHA1 Message Date
Claire Guilbaud
458a9f22da
yolk3k: new package at v0.9 (#17635) 2020-07-27 12:48:58 +02:00
Claire Guilbaud
38730c6e68
sphinxcontrib trio: new package at v1.1.2 (#17631) 2020-07-27 12:14:12 +02:00
Claire Guilbaud
21a4edb1f3
sphinx gallery: new package at v0.7.0 (#17633) 2020-07-27 11:21:48 +02:00
Greg Becker
9cc01dc574 add tutorial setup script to share/spack (#17705)
* add tutorial setup script to share/spack

* Add check for Ubuntu 18, fix xvda check, fix apt-get errors
  - now works on t2.micro, t2.small, and m instances
  - apt-get needs retries around it to work

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-07-27 01:18:16 -07:00
Greg Becker
1ceec31422
add tutorial setup script to share/spack (#17705)
* add tutorial setup script to share/spack

* Add check for Ubuntu 18, fix xvda check, fix apt-get errors
  - now works on t2.micro, t2.small, and m instances
  - apt-get needs retries around it to work

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-07-27 01:17:58 -07:00
Todd Gamblin
8d8cf6201b bugfix: don't redundantly print ChildErrors (#17709)
A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.

- [x] SpackErrors were designed to be printed by the forked process, not
      by the parent, so check if they've already been printed.
- [x] update tests
2020-07-26 22:43:10 -07:00
Todd Gamblin
d351946194
bugfix: don't redundantly print ChildErrors (#17709)
A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.

- [x] SpackErrors were designed to be printed by the forked process, not
      by the parent, so check if they've already been printed.
- [x] update tests
2020-07-26 22:41:55 -07:00
Hadrien G
907f9e8411
[root] Add version 6.22 (#17459)
* Add ROOT v6.22

* Hello xext my old friend...
2020-07-26 10:08:53 -05:00
Patrick Gartung
66d59a90ed
Rename sas static-analysis-package (#17695) 2020-07-24 17:07:01 -07:00
Nicholas Sly
5795f1d7da
Add Totalview package (#17643)
* Add initial totalview package.

* Add maintainer and helpful comments/information.

Co-authored-by: sly <sly@lanl.gov>
2020-07-24 16:01:32 -07:00
t-nojiri
de6dfe3707
brltty (package): Add dependency on alsa-lib (#17616) 2020-07-24 15:56:34 -07:00
Jen Herting
148acfefcc
py-gensim (package): add version 3.8.3; update dependency constraints (#17641) 2020-07-24 15:47:19 -07:00
Matthieu Dorier
b04f9e6774
MPICH (package): add optional support for argobots (#17678) 2020-07-24 15:42:00 -07:00
Christian Tacke
0e090064c4 singularity: Add version 3.6.1 2020-07-24 15:35:40 -07:00
vvolkl
be06803804
WHIZARD (package): add LCIO dependency, Openloops support (#17658)
* WHIZARD: add versions 2.8.4 and 2.8.3
* New package: LCIO
* WHIZARD: add optional dependency on LCIO
* WHIZARD: add optional dependency on Openloops
* WHIZARD: allow building with either hepmc or hepmc3 dependencies
* Openloops: set process_lib_dir in configure
* Openloops: fix reference to variant
2020-07-24 15:25:57 -07:00
Dennis Klein
0c63c94103
Relax architecture compatibility check (#15972)
* Relax architecture compatibility check
* Add test coverage for the spack.abi module
2020-07-24 10:00:55 -07:00
Andrew W Elble
99c46e8186
py-astropy: force re-cythonization of distributed .pyx files (#17567)
astropy 3.2.1 fails to build with python 3.8.3 with
errors similar to this:

astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)

These are files that are generated by cython, but are included in the
tarball. Since there's apparently been an API change to PyCode_New, they will
need to be re-cythonized to compile correctly.
2020-07-24 17:46:56 +02:00
Andrew W Elble
30d0347825
py-astropy-healpix: new package (#17568) 2020-07-24 17:39:45 +02:00
jdomke
ea50e4036e
scorep: add libunwind dependency (#17580) 2020-07-24 17:30:50 +02:00
Adam J. Stewart
f73a3d35a8
spack help --spec: add compiler flags (#17584) 2020-07-24 17:27:43 +02:00
Dmitriy
02f14fd857
Initialize new_specs in Environment.remove() (#17592) 2020-07-24 17:18:40 +02:00
Harmen Stoppels
54bce00d4d
Ensure that the stubs directory does not end up in the rpath (#17619) 2020-07-24 17:02:58 +02:00
Jon Rood
d3e4b14997
imagemagick: added dependency on libsm (#17577) 2020-07-24 17:00:25 +02:00
rempke
6bad79fca0
netlib-scalapack: fixed compilation with gcc 10 (#17647) 2020-07-24 16:53:32 +02:00
t-nojiri
13b3578d2f
camx: change compile option for aarch64 (#17653) 2020-07-24 16:39:40 +02:00
Adam J. Stewart
08b5b56566
Qhull: add v2019.1 and v2020.1 (#17648)
* Qhull: add v2019.1 and v2020.1
* Fix compilation with Apple Clang
2020-07-24 16:16:53 +02:00
Adam J. Stewart
c1a2d66804
py-matplotlib: fix freetype and qhull dependencies (#17649) 2020-07-24 16:15:50 +02:00
Mark Olesen
c95c183bc4
openfoam: install META-INFO directory (#17673)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-24 15:32:18 +02:00
Michael Kuhn
ed4b770e1a
gcc: added v10.2.0 (#17681) 2020-07-24 15:24:12 +02:00
Federico Ficarelli
b8c3e3e16f
hipsycl: switch to renamed default branch (#17689) 2020-07-24 15:19:59 +02:00
Rémi Lacroix
d9c1b62d38
CMake: added v3.18.0. (#17688) 2020-07-24 15:02:08 +02:00
ilbiondo
1aa1ddcd78
Updated elmer-fem recipe (#17687) 2020-07-24 09:47:09 +02:00
Adam J. Stewart
5fed42eae8 NumPy: add v1.19.1 2020-07-23 17:56:48 -07:00
ketsubouchi
1bbf8c0635
libgd (package): update configure to find jpeg dependency (#17655) 2020-07-23 17:55:34 -07:00
ketsubouchi
1fe07891e3
cctools (package): remove fstack-protector-all for Fujitsu compiler (#17656)
The Fujitsu C compiler does not support the "fstack-protector-all" option.
2020-07-23 17:49:37 -07:00
Tamara Dahlgren
a88675ffa9
XBraid (package): Switch to Github URL (#17670) 2020-07-23 17:27:25 -07:00
Gregory Becker
63db5499ee Merge tag 'v0.15.2' into develop 2020-07-23 16:55:22 -07:00
Gregory Becker
d6d839cd3e update changelog for 0.15.2 2020-07-23 16:04:26 -07:00
Gregory Becker
3534717151 bump version number for 0.15.2 2020-07-23 16:04:08 -07:00
Chuck Atkins
547c71ad78
Revert "Add libglvnd packages/Add EGL support (#14572)" (#17682)
This reverts commit 573489db71.
2020-07-23 17:41:48 -04:00
Greg Becker
e289d481ea add tutorial public key to share/spack/keys dir (#17684) 2020-07-23 14:38:26 -07:00
Greg Becker
cdab4bdee0
add tutorial public key to share/spack/keys dir (#17684) 2020-07-23 14:35:25 -07:00
Greg Becker
ed8250e055 cray: detect shasta os properly (#17467)
Fixes #17299

Cray Shasta systems appear to use an unmodified Sles or other Linux operating system on the backend (like Cray "Cluster" systems and unlike Cray "XC40" systems that use CNL).

This updates the CNL version detection to properly note that this is the underlying OS instead of CNL and delegate to LinuxDistro.
2020-07-23 14:01:09 -07:00
robo-wylder
40cd845479 environment-views: fix bug where missing recipe/repo breaks env commands (#17608)
* environment-views: fix bug where missing recipe/repo breaks env commands

When a recipe or a repo has been removed from Spack and an environment
is active, it causes the view activation to crash Spack before any
commands can be executed. Further, the error message it not at all clear
in explaining the issue.

This forces view regeneration to always start from scratch to avoid the
missing package recipes, and defaults add_view=False in main for views activated
by the `spack -e` option.

* add messages to env status and deactivate

Warn users that a view may be corrupt when deactivating an environment
or checking its status while active. Updated message for activate.

* tests for view checking

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2020-07-23 14:00:42 -07:00
Peter Scheibel
3b45241566 Update fetch order to match iteration order of MirrorReference (#17572) 2020-07-23 14:00:14 -07:00
Tamara Dahlgren
d5b0f85ea3 Reduce output verbosity with debug levels (#17546)
* switch from bool to int debug levels

* Added debug options and changed lock logging to use more detailed values

* Limit installer and timestamp PIDs to standard debug output

* Reduced verbosity of fetch/stage/install output, changing most to debug level 1

* Combine lock log methods; change build process install to debug

* Changed binary cache install messages to extraction messages
2020-07-23 13:59:12 -07:00
eugeneswalker
c6241e72a6 bugfix: use getattr for variation.prefix/suffix (#17669) 2020-07-23 13:56:45 -07:00
Todd Gamblin
f528022a7d bugfix: make compiler preferences slightly saner (#17590)
* bugfix: make compiler preferences slightly saner

This fixes two issues with the way we currently select compilers.

If multiple compilers have the same "id" (os/arch/compiler/version), we
currently prefer them by picking this one with the most supported
languages.  This can have some surprising effects:

* If you have no `gfortran` but you have `gfortran-8`, you can detect
  `clang` that has no configured C compiler -- just `f77` and `f90`. This
  happens frequently on macOS with homebrew. The bug is due to some
  kludginess about the way we detect mixed `clang`/`gfortran`.

* We can prefer suffixed versions of compilers to non-suffixed versions,
  which means we may select `clang-gpu` over `clang` at LLNL. But,
  `clang-gpu` is not actually clang, and it can break builds. We should
  prefer `clang` if it's available.

- [x] prefer compilers that have C compilers and prefer no name variation
  to variation.

* tests: add test for which()
2020-07-23 13:56:18 -07:00
Harmen Stoppels
665a47607e ci pipelines: activate environment without view (#17440) 2020-07-23 13:55:46 -07:00
Todd Gamblin
12958497dc bugfix: ignore Apple's "gcc" by default (#17589)
Apple's gcc is really clang. We previously ignored it by default but
there was a regression in #17110.

Originally we checked for all clang versions with this, but I know of
none other than `gcc` on macos that actually do this, so limiting to
`apple-clang` should be ok.

- [x] Fix check for `apple-clang` in `gcc.py` to use version detection
  from `spack.compilers.apple_clang`
2020-07-23 13:55:11 -07:00