Commit graph

11164 commits

Author SHA1 Message Date
Elsa Gonsiorowski, PhD
74a5d92f07 Remove /nfs/tmp2 from default build_stage locations (#10170)
* Remove /nfs/tmp2 from default configuration
* /nfs/tmp2 is going away from LC... and doesn’t exist for the rest of the world.
* update documentation to remove /nfs/tmp2 as well
2018-12-21 02:03:54 -08:00
Daryl W. Grunau
36ab7be406 R3D spackage (#10164)
* r3d spackage

* address Adam's review comments

* fix flake8: too many blank lines
2018-12-20 17:23:38 -06:00
Sajid Ali
e57ddda4cc update h5py to 2.9.0 (#10169)
* 	modified:   var/spack/repos/builtin/packages/py-h5py/package.py

* Update package.py

* Update package.py
2018-12-20 17:23:17 -06:00
thelfer
00d84b1978 Update TFEL package (#9995)
* add the tfel package

* fix the tfel package

* fix the tfel package

* fix the tfel package

* Taking Adam J. Steward' remarks into account

* fixes trailing white spaces

* Update description

* Update dependencies following @adamjstewart adices

* Style fixes

* Style fixes

* Add java optional support

* add the maintainers attribute (following @alalazo advice), disable interface not selected (following @adamjstewart advice)

* flake8 fixes

* Fix Cast3M and python-bindings support. Python detection is made compatible with cmake'FindPythonLibs module (at least how it is used in TFEL)

* Style fixes

* Style fixes

* Fix test on python version

* Follow @adamjstewart advices: code is much cleaner and readable

* Small fix

* Small fix

* Add comment

* Small fix in cmake option

* try again (trying to overcome Travis CI unstable build process)
2018-12-20 15:47:24 -06:00
Mark Olesen
7ded7fdbda OpenFOAM-v1812 - new version (#10167) 2018-12-20 13:18:51 -06:00
Omar Padron
60298787e4 Fix docker builds (#9805)
* move docker test logic to share/spack/qa
* update Dockerfile for archlinux
2018-12-20 11:17:46 -08:00
Omar Padron
56cb691fcc fix multiple issues with the docker images (#9718)
- fixed an issue where some undesirable parts of
   the spack source tree were being copied into
   the image context.

 - added a workaround for a tty ioctl warning on
   ubuntu

 - adjusted how the main images are built so that
   `RUN spack ...` works automatically for child
   images that base themselves on them.
2018-12-20 11:11:55 -08:00
Zack Galbreath
b90f619037 Performance improvements for CDash reporter
* Record build output as an array of lines rather than concatenating to a
  single large string.
* Use string.find to avoid running re.search on every line of output.
2018-12-20 09:23:08 -08:00
Zack Galbreath
6355ee208c Include accurate build time in CDash report 2018-12-20 09:23:08 -08:00
Zack Galbreath
8d0872083c Report current git commit of Spack to CDash
When using the CDash reporter, upload a Update.xml file that
indicates the hash of Spack's current git commit.
2018-12-20 09:23:08 -08:00
Scott Wittenburg
7217b4a4b9 Make sure to urlencode cdash submit parameters 2018-12-20 09:23:08 -08:00
Zack Galbreath
aed9a532c6 Get buildId from CDash at submit time
Pass extra data when submitting to CDash.  If CDash responds with a buildId,
construct and display helpful URL that links to the uploaded report.
2018-12-20 09:23:08 -08:00
Zack Galbreath
738d2bd77a Allow more customization for CDash reporter
Add new command line arguments to `spack install` that allow users
to set the build name, site name, and track in their CDash report.
2018-12-20 09:23:08 -08:00
Zack Galbreath
0bae6626a4 Avoid UnboundLocalError
Make sure cdash_phase is defined before referring to it.
2018-12-20 09:23:08 -08:00
jthies
9110c727bb packages/phist: add maintainer (#10162) 2018-12-20 13:23:35 +01:00
Greg Sjaardema
93c491f729 CGNS: Allow use of git branch versions (#10156)
* CGNS: Allow use of git branch versions

Add ability to use git `master` and `develop` branches of the CGNS library.  The `seacas` package sometimes needs to use the `master` or `develop` branch due to some new changes to the parallel I/O implementation in CGNS which has not yet been released.

* CGNS: Reorder to put newest version on top

Based on review comments, place newest version (develop) first in list.
2018-12-19 20:02:24 -06:00
Todd Gamblin
207c37759c env: all commands that disambiguate specs should be env-aware
- some commands were missed in the rollout of spack environments

- this makes all commands that need to disambiguate specs restrict the
  disambiguation to installed packages in the active environment, as
  users would expect
2018-12-19 17:49:51 -08:00
Mark W. Krentel
84b33523ec dyninst: patch to build dyninst with older gcc (#10160)
* dyninst: patch to build dyninst with older gcc

Add 'v9.3.2-auto.patch'.  This patch changes some 'auto t: type' usage
to the older but equivalent 'type.begin()'.  This allows building
dyninst 9.3.2 with gcc 4.4 which doesn't support the newer syntax.
This patch is harmless with newer gcc.

* Fix typo in patch.  (My bad for sloppy cut-and-paste.)

* Restrict the patch to gcc 4.7 and earlier.  gcc 4.8 supports the newer
usage and thus doesn't need the patch.
2018-12-19 17:24:43 -08:00
Michael Kuhn
84c547cf6e sqlite: add 3.26.0 (#10138) 2018-12-19 17:07:03 -06:00
Owen Solberg
6b1b9031ea updated checksum for kallisto (#10158) 2018-12-19 17:06:33 -06:00
Michael Kuhn
67ab73d381 fetch_strategy: improve GitFetchStrategy (#10153)
Currently, only the Git repsository's URL shows up in the `spack info`
output, which makes it hard to distinguish different versions:
```
Safe versions:
    develop    [git] https://github.com/LLNL/H5Z-ZFP.git
    0.8.0      [git] https://github.com/LLNL/H5Z-ZFP.git
    0.7.0      [git] https://github.com/LLNL/H5Z-ZFP.git
```

This change adds additional information as shown when cloning a Git
repository:
```
Safe versions:
    develop    [git] https://github.com/LLNL/H5Z-ZFP.git on branch master
    0.8.0      [git] https://github.com/LLNL/H5Z-ZFP.git at commit af165c4
    0.7.0      [git] https://github.com/LLNL/H5Z-ZFP.git at commit 58ac811
```
2018-12-19 14:33:58 -08:00
jthies
5f3d9a4076 phist tag 1.7.5 was moved (#10155) 2018-12-19 13:36:49 -06:00
sknigh
5adec7e491 Updated Dakota to 6.9 (#10157)
* Updated Dakota to 6.9

* Change comment wording
2018-12-19 13:03:14 -06:00
Adam J. Stewart
adfbe71b1b
Add python bindings to libxslt (#10149) 2018-12-19 11:39:19 -06:00
Adam J. Stewart
654360d2ad
Add missing libiconv dependency to libxml2 (#10148) 2018-12-19 11:38:14 -06:00
Adam J. Stewart
0fcca9f422
Add list_url to docbook-xml (#10146) 2018-12-19 11:37:54 -06:00
Adam J. Stewart
e19e176e67
Add latest version of docbook-xsl (#10147) 2018-12-19 11:37:35 -06:00
Adam J. Stewart
ed0ca18c3c
Restrict patch to oldest version of libbsd (#10145) 2018-12-19 11:37:11 -06:00
Satish Balay
c1e562f333
PETSc: add version 3.10.3 (#10154) 2018-12-19 10:46:02 -06:00
Neil Flood
a6e2f1a96a mapserver: new package (#10067) 2018-12-19 10:04:25 +01:00
Massimiliano Culpo
e057500009
Added labels in github issue templates (#10128) 2018-12-19 09:56:26 +01:00
Adam J. Stewart
c1a99bf8ec
Add additional info to MesonPackage docs (#10133)
* Add additional info to MesonPackage docs

* No Pygments lexer for Meson code, default to none
2018-12-18 21:51:42 -06:00
Elsa Gonsiorowski, PhD
b091fcdb8e fix for mpifileutils package (#10142)
* proper include & linking of libarchive

* due to linux headers, mfu can't build on mac

* hard code deps in configure line

rather than relying on pkg-config

* +xattr during config

* must also link the lib

* find mfu.h

* long lines
2018-12-18 21:51:24 -06:00
Dave
b27f81ac00 WarpX: Added dependency on fftw when +psatd (#10144) 2018-12-18 20:11:08 -06:00
Matthias Wolf
22d9938560 flatbuffers: add 1.10.0 (#10137)
Also unpin the version from the arrow package.
2018-12-18 10:53:02 -06:00
Adam J. Stewart
f8c650b9c4 Add pdf variant to cairo (#10135) 2018-12-18 16:39:36 +01:00
Justin Stanley
59d7854b89 clp: add build_directory, remove old hack (#10112)
* clp: add build_directory, remove old hack

* clp: use spack-build for building
2018-12-18 08:36:40 -06:00
Adam J. Stewart
d4b5fc141c
Add latest version of libxkbcommon (#10134) 2018-12-17 19:27:58 -06:00
Alberto Chiusole
a41571a1b6 Add variant to ecflow to choose whether to use static boost libraries. (#9933)
When this variant is set, it requires boost to be built with the +pic variant.
2018-12-17 19:23:53 -06:00
David Hows
c70ea22c6f Add thread count variant to atlas (#9999)
* Add thread count variant

Atlas automatically configures itself and optimizes to run with a fixed number of threads. This can be overridden during compile by setting a flag and atlas will tune itself to use the specified number, rather than all system CPUs. 

Default value is the existing logic, autoconfigure.

* Fix Linting

* Another lint for longline
2018-12-17 19:12:00 -06:00
Jannek Squar
09d2df690a Add spack package for saga-gis (#10018)
* Add spack package for saga-gis

* Adjusted license header

* Adjust saga-gis package, added fixme comments

* Removed version constraint

* Fixed fixme comment
2018-12-17 19:10:50 -06:00
Matthias Diener
776f99a414 git: add version 2.20.1 (#10130) 2018-12-17 17:36:57 -06:00
Omar Awile
d313291c2d Added RocksDB package (#10084)
* Added rocksdb package

* Fixes based on @tristan0x and @pramodk comments

* Cleanup

* A couple minor fixes based on @adamjstewart 's advice

* Fixed flake8 errors
2018-12-17 17:36:45 -06:00
Adam J. Stewart
c2b546fa97
Add missing gettext dependency to at-spi2-core (#10124) 2018-12-17 14:00:53 -06:00
Todd Gamblin
37954a78ff
Revert "mark: Create new package. (#7069)" (#10131)
This reverts commit 90b34c96d6.
2018-12-17 11:15:32 -08:00
Adam J. Stewart
bcd65906c9
Add latest version of gdk-pixbuf (#10126) 2018-12-17 13:04:40 -06:00
Adam J. Stewart
5964d14936
Add latest version of ghostscript (#10123) 2018-12-17 13:04:16 -06:00
Adam J. Stewart
fe73043170
Add missing libbsd dependency to libxdmcp (#10122) 2018-12-17 13:04:00 -06:00
Adam J. Stewart
9913b3b846
Add latest version of libbsd (#10121) 2018-12-17 13:03:43 -06:00
Adam J. Stewart
2d0ddd5d11
Add help messages to spack gpg subcommands (#10117) 2018-12-17 13:02:51 -06:00