Commit graph

25721 commits

Author SHA1 Message Date
Paul Kuberry
cfae035a7b
py-pycompadre: add new package (#29316) 2022-03-03 19:10:04 +01:00
Eduardo Rothe
9dfaa3d8fd
relion: add version 4.0-beta (#29318)
- add version 4.0-beta to available versions
- update stable version to 3.1.3

Co-authored-by: Eduardo Rothe <eduardo.rothe@epfl.ch>
2022-03-03 19:08:46 +01:00
haralmha
858c780e1f
hbase: add v2.4.9 (#29319) 2022-03-03 19:04:58 +01:00
Tamara Dahlgren
afc397be3a
OpenMPI: correct slurm-pmi conflict version (#29309) 2022-03-03 17:40:14 +01:00
Weston Ortiz
cd2cb4aef5
goma: add new package (#29307) 2022-03-03 17:26:08 +01:00
haralmha
ebf92b428e
prophecy4f: add new package (#29289) 2022-03-03 15:03:10 +01:00
Carlos Bederián
1834ab971d
nss: set C++ compiler (#29195) 2022-03-03 14:59:29 +01:00
dependabot[bot]
ed6274a0bf
build(deps): bump actions/checkout from 2 to 3 (#29276)
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2...a12a3943b4bdde767164f792f33f40b04645d846)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-03-03 14:43:49 +01:00
dependabot[bot]
450bbdd854
build(deps): bump docker/login-action from 1.13.0 to 1.14.1 (#29277)
Bumps [docker/login-action](https://github.com/docker/login-action) from 1.13.0 to 1.14.1.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](6af3c118c8...dd4fa0671b)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-03-03 14:42:28 +01:00
Michael Kuhn
49069e4f58
installer: Fix cosmetic problem with terminal title (#29070)
The status displayed in the terminal title could be wrong when doing
distributed builds. For instance, doing `spack install glib` in two
different terminals could lead to the current package being reported as
`40/29` due to the way Spack handles retrying locks.

Work around this by keeping track of the package IDs that were already
encountered to avoid counting packages twice.
2022-03-03 14:21:15 +01:00
kwryankrattiger
20471b8420
ECP-SDK: Propagate hdf5 to darshan-runtime (#29081) 2022-03-03 10:41:10 +00:00
Wouter Deconinck
5cd1e08e8a
libdrm: new versions up to v2.4.110, build system meson (#27253) 2022-03-03 10:39:47 +01:00
Scott Wittenburg
c72735229f
test/installer.py: remove commented code and inaccurate docstring (#29305) 2022-03-03 10:19:57 +01:00
Qian Jianhua
79c0f631de
gfsio: support Fujitsu compiler (#29311) 2022-03-03 09:06:49 +00:00
Toyohisa Kameyama
01c1e6860f
onednn: add version 2.5.2. (#29259) 2022-03-02 19:33:40 -06:00
kwryankrattiger
cbfe0d7492
HIP: Change mesa dep to gl (#29017)
* HIP: Change mesa18 dep to gl

* Mesa: Conflict with llvm-amdgpu when +llvm and swr

* Add def for suffix

* Disable llvm suffix patch.

* LLVM: Remove version suffix patches
2022-03-02 18:02:30 -07:00
Hadrien G
a6aff211d2
[acts] Add version 17 and 17.1, digitization plugin went in core (#28745) 2022-03-02 23:16:18 +01:00
Jen Herting
dfdb11bc71
julia: add version 1.7.2 (#29303) 2022-03-02 22:52:36 +01:00
Danny McClanahan
2c331a1d7f
make @llnl.util.lang.memoized support kwargs (#21722)
* make memoized() support kwargs

* add testing for @memoized
2022-03-02 11:12:15 -08:00
kwryankrattiger
916c94fd65
ECP-SDK: Propagate cuda to ascent (#28878) 2022-03-02 13:39:36 -05:00
kwryankrattiger
1599d841c0
ECP-SDK: ParaView 5.11: required for CUDA (#29054)
* ECP-SDK: ParaView 5.11: required for CUDA

* Add conflict with ParaView@master

Because of the additional constraints for cuda, ParaView@master may be
selected unintentionally. Prefer older versions of ParaView without cuda
to master with cuda.
2022-03-02 13:17:25 -05:00
QuellynSnead
e6dcd382ee
Paraview: Use 'UNIX Makefiles' instead of ninja as the CMake generator for XL (#29163)
* hypre: Add releases 2.21.0 and 2.22.0

* Revert "hypre: Add releases 2.21.0 and 2.22.0"

This reverts commit 8921cdb3ac772794f82ff07b0aa816c204aca921.

* Address external linkage failures in elfutils 0.185:
  https://bugs.gentoo.org/794601
  https://sourceware.org/pipermail/elfutils-devel/2021q2/003862.html
Encountered while building within a Spack environment.

* Revert "Address external linkage failures in elfutils 0.185:"

This reverts commit 76b93e4504defd856b62027371064a5e65a027a5.

* paraview: The ninja generator has problems with XL and CCE

See https://gitlab.kitware.com/paraview/paraview/-/issues/21223

* paraview: Add variant to allow choice of cmake generator.
This will be necessary until problems with cmake+ninja on XL and
CCE builds can be resolved.

See https://gitlab.kitware.com/paraview/paraview/-/issues/21223

* paraview: ninja generator problems with XL/CCE
    By popular preference, abandon the idea of a special variant
    and select the generator based on compiler.

* Greg Becker suggested using the dedicated "generator" method to
pass the choice of makefile generator to cmake.

* paraview: The build errors I saw before with paraview%cce + ninja
have not reappeared in subsequent testing, so I'm dropping it from this
PR. If they re-occur I'll report the issue separately to KitWare.
2022-03-02 11:26:31 -05:00
Manuela Kuhn
a94f11a2b2
py-nibabel: add 3.2.2 (#29266)
* py-nibabel: add 3.2.2

* fix dependencies
2022-03-02 09:50:09 -06:00
Manuela Kuhn
a1f32cdaff
py-msgpack: add 1.0.3 (#29216)
* py-msgpack: add 1.0.3

* remove dependencies
2022-03-02 09:49:38 -06:00
Massimiliano Culpo
8d118104c7
Fix typos when forwarding arguments to traverse_edges (#29261)
A few calls use `deptypes=...` instead of `deptype=...`
2022-03-02 08:43:26 +01:00
Phil Carns
a43e3f3ffb
bmi package: add version 2.8.1 (#29274) 2022-03-01 18:56:44 -08:00
Wouter Deconinck
bab331ff34
assimp package: add version 5.2.2 (#29240) 2022-03-01 18:48:18 -08:00
Wouter Deconinck
d9113eb5ec
gaudi package: add version 36.4 (#29241) 2022-03-01 18:47:21 -08:00
Valentin Volkl
4831daa2dc
sherpa package: deprecate old versions with build failures (#29268) 2022-03-01 18:46:00 -08:00
Phil Carns
d5dd6471fc
mochi-margo package: add version 0.9.7 (#29275) 2022-03-01 18:44:03 -08:00
Glenn Johnson
277f578707
Fix tags attribute for tar (#29189) 2022-03-01 18:35:44 -07:00
iarspider
3478b06262
py-gosam: use legacy setup.py invocation (fixes #29260) (#29264) 2022-03-01 18:31:48 -06:00
Richarda Butler
7268ab75f4
Superlu: Update Spack test dir (#27844)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-03-01 16:20:47 -08:00
Harmen Stoppels
f2c5092588
llvm: add missing system libs (#29270)
```
$ ./bin/llvm-config --link-static --system-libs
-lrt -ldl -lpthread -lm -lz -ltinfo -lxml2
```

`libz` and `libxml2` were missing.
2022-03-01 15:35:38 -07:00
Jen Herting
d05560ee32
New package: py-deepsig (#28480)
* [py-deepsig] New package and several cherry picks

* [py-deepsig] Cleanup of testing comments

* finished package with git reference

* fixed flake8 issue

* [py-deepsig] fixed copyright

* [py-deepsig] switched to version with functional requirements.txt. Ignoring missing README_RAW.md

* [py-deepsig] updated version in pypi variable

* [py-deepsig] simplifying missing readme workaround

Co-authored-by: Doug Heckman <dahdco@rit.edu>
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-03-01 13:21:04 -07:00
Manuela Kuhn
71f081366b
py-neurora: add 1.1.6.1 (#29265) 2022-03-01 13:51:49 -06:00
Manuela Kuhn
327fcf7a54
py-nest-asyncio: add 1.5.4 (#29262) 2022-03-01 13:48:45 -06:00
Manuela Kuhn
8cefe38b0e
py-keyrings-alt: add 4.1.0 (#29177) 2022-03-01 07:20:52 -07:00
Manuela Kuhn
88eb437d94
py-keyring: add 23.5.0 (#29176) 2022-03-01 06:54:10 -07:00
Manuela Kuhn
a155975b8b
mesa: add conflict with llvm@13 (#28870)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-03-01 11:10:58 +01:00
Tamara Dahlgren
b20df12d09
test_env_install_two_specs_same_dep: properly check installed specs (#29222) 2022-03-01 10:35:14 +01:00
Harmen Stoppels
f60c6ca485
libuv: remove bash dependency (#29251) 2022-03-01 10:15:22 +01:00
Wouter Deconinck
a3947381c7
assimp: patch for issue that prevents 5.1: from working with qt (#29257) 2022-02-28 18:42:08 -07:00
Manuela Kuhn
6eef12cd10
py-nbclassic: add 0.3.5 (#29220)
* py-nbclassic: add 0.3.5

* Update var/spack/repos/builtin/packages/py-nbclassic/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix style

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-28 16:36:06 -07:00
Cory Bloor
2bd016895d
rocblas: add spack test support (#27436)
* rocblas: add spack test support

* rocblas: limit spack test support to @4.2.0:

* rocblas: simplify define
2022-03-01 00:26:08 +01:00
Jen Herting
10f3113b3c
New package: py-ci-sdr (#28644)
* clean py-ci-sdr

* [py-ci-sdr] updated copyright

* [py-ci-sdr] added upper bound for python version

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-02-28 15:27:44 -06:00
Massimiliano Culpo
9b298fd7e4
Add a new test to catch exit code failure (#29244)
* Add a new test to catch exit code failure

fixes #29226

This introduces a new unit test that checks the return
code of `spack unit-test` when it is supposed to fail.

This is to prevent bugs like the one introduced in #25601
in which CI didn't catch a missing return statement.

In retrospective it seems that the shell test we have right
now all go through `tty.die` or similar code paths which
call `sys.exit(a)` explicitly. This new test instead checks
`spack unit-test` which relies on the return code from
command invocation in case of errors.
2022-02-28 12:55:24 -08:00
Toyohisa Kameyama
8f4e029e3a
qt: Fix build with Fujitsu compiler. (#29199) 2022-02-27 22:12:36 -05:00
iarspider
d29253bd7a
Add 'master' version for dmtcp (#29211)
* Add 'develop' version for dmtcp

* Update var/spack/repos/builtin/packages/dmtcp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-27 13:34:09 -06:00
iarspider
8eefab4033
New version: py-onnx 1.8.1 (#29214)
* New version: py-onnx 1.8.1

* Update package.py
2022-02-26 11:50:17 -06:00