Commit graph

25721 commits

Author SHA1 Message Date
JDBetteridge
e0e3443f3a
PETSc: split install() into configure(), build(), install() (#29126) 2022-03-18 07:59:11 -05:00
haralmha
56ba61c52f
hepmcanalysis: propagate cxxstd from root (#29512)
* Use same cxx value as root

* Remove pointer syntax from non-pointer type in source

* Run patch function before build

* Use raw string in filter_file and merge edit function with patch

* Escape parentheses

* Use gDirectory from ROOT instead of CurrentDirectory function
2022-03-18 08:52:05 -04:00
Carlos Bederián
dd67f46c6b
mmg: add 5.6.0 (#29534) 2022-03-18 08:51:02 -04:00
Harmen Stoppels
62fcf407e2
environment: Don't print 'updating view at' when no specs (#29536) 2022-03-18 08:49:47 -04:00
Massimiliano Culpo
2fa495154e
Split the workflow section and remove outdated advices (#29344)
This PR removes a few outdated sections from the "Basics" part of the 
documentation. It also makes a few topic under the environment section
more prominent by removing an unneeded spack.yaml subsection and 
promoting everything under it.
2022-03-18 10:41:27 +01:00
Abhik Sarkar
0ce8b9d398
Make boost minimal and composable (Original PR#22303) (#28623)
* Make boost composable

Currently Boost enables a few components through variants by default,
which means that if you want to use only what you need and no more, you
have to explicitly disable these variants, leading to concretization
errors whenever a second package explicitly needs those components.

For instance if package A only needs `+component_a` it might depend on
`boost +component_a ~component_b`. And if packge B only needs
`+component_b` it might depend on `boost ~component_a +component_b`. If
package C now depends on both A and B, this leads to unsatisfiable
variants and hence a concretization error.

However, if we default to disabling all components, package A can simply
depend on `boost +component_a` and package B on `boost +component_b` and
package C will concretize to depending on `boost +component_a
+component_b`, and whatever you install, you get the bare minimum.

* Fix style

* Added composable boost dependencies for folly

* fixing akantu merge issue

* hpctoolkit boost dependencies already defined

* Fix Styles

* Fixup style once more

* Adding isort fix

* isort one more time

* Fix for package audit issue

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Ryan O'Malley <rd.omalley@comcast.net>
2022-03-17 17:42:07 -06:00
lorddavidiii
f8f4aafe81
clinfo: add new versions (#29537) 2022-03-17 23:19:33 +01:00
Harmen Stoppels
ea13122f3c
Add deprecation warnings for activate/deactivate/view (#29430) 2022-03-17 14:52:56 -07:00
Harmen Stoppels
282a366fc4
windows ci: make conditional on style tests etc (#29567) 2022-03-17 14:20:02 -07:00
Zack Galbreath
5a72204d38
Remove references to features/windows-support branch (#29565) 2022-03-17 10:29:29 -07:00
Jen Herting
27f608c800
New package: py-jaconv (#29548)
* [py-jaconv] created template

* [py-jaconv]

- added homepage
- added description
- depends on setuptools
- removed fixmes
2022-03-17 12:15:04 -05:00
Toyohisa Kameyama
5a85b181d3
octa: new package. (#29333) 2022-03-17 09:58:51 -07:00
John Parent
99c1f9b987 PWSH Support
Include support for powershell

Prepend cmd and pwsh with [spack] to denote spack enabled shell
2022-03-17 09:01:01 -07:00
John Parent
4aee27816e Windows Support: Testing Suite integration
Broaden support for execution of the test suite
on Windows.
General bug and review fixups
2022-03-17 09:01:01 -07:00
Peter Josef Scheibel
e63b4f752a Failed _write now track that the DB is inconsistent
Consistency is restored on next transaction
2022-03-17 09:01:01 -07:00
John Parent
cf1349ba35 "spack commands --update-completion" 2022-03-17 09:01:01 -07:00
John W. Parent
e4d4a5193f Path handling (#28402)
Consolidate Spack's internal filepath logic to a select
few places and refactor to consistent internal useage of
os.path utilities. Creates a prefix, and a series of utilities
in the path utility module that facilitate handling paths
in a platform agnostic manner.

Convert Windows paths to posix paths internally

Prefer posixpath.join instead of os.path.join

Updated util/ directory to account for Windows integration

Co-authored-by: Stephen Crowell <stephen.crowell@khq.kitware.com>
Co-authored-by: John Parent <john.parent@kitware.com>

Module template format for windows (#23041)
2022-03-17 09:01:01 -07:00
John Parent
df4129d395 Expand external find for Windows (#27588)
* Incorporate new search location

* Add external user option

* proper doc string

* Explicit commands in getting started

* raise during chgrp on Win

recover installer changes

Notate admin privleges

Windows phase install hooks

Find external python and install ninja (#23496)

Allow external find python to find windows python and spack install ninja

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Betsy McPhail <betsy.mcphail@kitware.com>
2022-03-17 09:01:01 -07:00
Betsy McPhail
06aef626cb Update tests support for Windows
Fixup common tests

    * Remove requirement for Python 2.6
    * Skip new failing test

Windows: Update url util to handle Windows paths (#27959)

    * update url util to handle windows paths

    * Update tests to handle fixed url handling

    * canonicalize path only when the path type matches the host platform

    * Skip some url tests on Windows

Co-authored-by: Omar Padron <omar.padron@kitware.com>

Use threading.TIMEOUT_MAX when available (#24246)

This value was introduced in Python 3.2. Specifying a timeout greater than
this value will raise an OverflowError.

Co-authored-by: Lou Lawrence <lou.lawrence@kitware.com>
Co-authored-by: John Parent <john.parent@kitware.com>
Co-authored-by: Betsy McPhail <betsy.mcphail@kitware.com>
2022-03-17 09:01:01 -07:00
John Parent
31daf0f2b6 Add Windows to platform and target changes
Add compiler hint to the root spec for Windows

Reporters on Windows (#26038)

Reporters use Jinja2 as the templating engine, and Jinja2 indexes
templates by Unix separators, even on Windows, so search using Unix paths
on all systems.

Support patching on win via git (#25871)

Handle GRP on windows
2022-03-17 09:01:01 -07:00
John Parent
3a994032f8 Spack on Windows package ports
CMake - Windows Bootstrap (#25825)

Remove hardcoded cmake compiler (#26410)

Revert breaking cmake changes
Ensure no autotools on Windows

Perl on Windows (#26612)

Python source build windows (#26313)

Reconfigure sysconf for Windows

Python2.6 compatibility

Fxixup new sbang tests for windows

Ruby support (#28287)

Add NASM support (#28319)

Add mock Ninja package for testing
2022-03-17 09:01:01 -07:00
John Parent
90c773488c Add Github Actions for Windows (#24504)
Setup Installer CI (#25184), (#25191)

Co-authored-by: Zack Galbreath <zack.galbreath@kitware.com>
Co-authored-by: lou.lawrence@kitware.com <lou.lawrence@kitware.com>
Co-authored-by: Betsy McPhail <betsy.mcphail@kitware.com>
2022-03-17 09:01:01 -07:00
John W. Parent
e65d3d14b4 Relocate spack_cmd and scripts from installer to root bin (#24651)
Relocate spack_cmd and scripts from installer
to root bin

Refactor documentation, installer, and launcher
to facilitate that change
2022-03-17 09:01:01 -07:00
Betsy McPhail
4a73bfc3b9 Use Python's zipfile, if available (#24556)
* Style fixes

* Use Python's zipfile, if available

The compression libs are optional in Python. Rely on python as a
first attempt then fall back to `unzip`
2022-03-17 09:01:01 -07:00
Betsy McPhail
f8782c46d7 Windows: VS and CMake support
Fix: Building packages with CMake is broken (#24241)

vsInstallPaths needs to be renamed vs_install_paths (#24297)
2022-03-17 09:01:01 -07:00
Jared Popelar
15ef85e161 Packaging of netlib-lapack for windows (#24993)
MSVC's internal CMake and Ninja now detected by spack external find and added to packages.yaml

Saving progress on packaging zlib for Windows

Fixing the shared CMake flag

* Loading Intel's ifx Fortran compiler into MSVC; if there are multiple
versions of MSVC installed and detected, ifx will only be placed into
the first block written in compilers.yaml. The version number of ifx can
be detected using MSVC's version flag (instead of /QV) by using
ignore_version_errors. This commit also provides support for detection
of Intel compilers in their own compiler block by adding ifx.exe to the
fc/f77_name blocks inside intel.py

* Giving CMake a Fortran compiler argument

* Adding patch file for removing duplicated mangling header for versions 3.9.1 and older; static and shared now successfully building on Windows

* Have netlib-lapack depend  on ninja@1.10

Co-authored-by: John R. Cary <cary@txcorp.com>
Co-authored-by: Jared Popelar <jpopelar@txcorp.com>

Making a default config.yaml for Windows

Small path length for build_stage

Provide more prerequisite details, mention default config.yaml

Killing an unnecessary setvars call

Replacing some lost changes, proofreading, updating windows-supported package list

Co-authored-by: John Parent <john.parent@kitware.com>
2022-03-17 09:01:01 -07:00
lou.lawrence@kitware.com
012758c179 Windows: Create installer and environment
* Add 'make-installer' command for Windows

* Add '--bat' arg to env activate, env deactivate and unload commands

* An equivalent script to setup-env on linux: spack_cmd.bat. This script
has a wrapper to evaluate cd, load/unload, env activate/deactivate.(#21734)

* Add spacktivate and config editor (#22049)

* spack_cmd: will find python and spack on its own. It preferentially
tries to use python on your PATH (#22414)

* Ignore Windows python installer if found (#23134)

* Bundle git in windows installer (#23597)

* Add Windows section to Getting Started document
(#23131), (#23295), (#24240)

Co-authored-by: Stephen Crowell <stephen.crowell@kitware.com>
Co-authored-by: lou.lawrence@kitware.com <lou.lawrence@kitware.com>
Co-authored-by: Betsy McPhail <betsy.mcphail@kitware.com>
Co-authored-by: Jared Popelar <jpopelar@txcorp.com>
Co-authored-by: Ben Cowan <benc@txcorp.com>

Update Installer CI

Co-authored-by: John Parent <john.parent@kitware.com>
2022-03-17 09:01:01 -07:00
Betsy McPhail
a7101db39d MSVC Compiler Find and vcvars env integration (#22856)
Made the vcvars batch script location a member variable of the msvc compiler subclass, initialized from the compiler executable path.  Added a setup_custom_environment() method to the msvc subclass that sources the vcvars script, dumps the environment, and copies the relevant environment variables to the Spack environment.  Added class variables to the Windows OS and MSVC compiler subclasses to enable finding the compiler executables and determining their versions.
2022-03-17 09:01:01 -07:00
loulawrence
f587a9ce68 use pytest stdout/err capture (#22584)
* On windows, write to StringIO without redirection in test cases to avoid conflicting with logger
2022-03-17 09:01:01 -07:00
Ben Cowan
a0164793cb Features/windows install (#22204)
* Fixed path and uid issues.

* Added needed import statement; kluged .exe extension.

* Got package to build.  Some manual intervention necessary, including sourcing the MSVC setup script and having certain configuration parameters.

* Removed CMake executable suffix hack.
2022-03-17 09:01:01 -07:00
Betsy McPhail
d4d101f57e Allow 'spack external find' to find executables on the system path (#22091)
Co-authored-by: Lou Lawrence <lou.lawrence@kitware.com>
2022-03-17 09:01:01 -07:00
Betsy McPhail
fb0e91c534 Windows: Symlink support
To provide Windows-compatible functionality, spack code should use
llnl.util.symlink instead of os.symlink. On non-Windows platforms
and on Windows where supported, os.symlink will still be used.

Use junctions when symlinks aren't supported on Windows (#22583)

Support islink for junctions (#24182)

Windows: Update llnl/util/filesystem

* Use '/' as path separator on Windows.
* Recognizing that Windows paths start with '<Letter>:/' instead of '/'

Co-authored-by: lou.lawrence@kitware.com <lou.lawrence@kitware.com>
Co-authored-by: John Parent <john.parent@kitware.com>
2022-03-17 09:01:01 -07:00
Betsy McPhail
a7de2fa380 Create rename utility function
os.rename() fails on Windows if file already exists.

Create getuid utility function (#21736)

On Windows, replace os.getuid with ctypes.windll.shell32.IsUserAnAdmin().

Tests: Use getuid util function

Co-authored-by: lou.lawrence@kitware.com <lou.lawrence@kitware.com>
Co-authored-by: Betsy McPhail <betsy.mcphail@kitware.com>
2022-03-17 09:01:01 -07:00
Betsy McPhail
b60a0eea01 Workarounds for install errors on Windows (#21890)
1. Forwarding sys.stdin, e.g. use input_multiprocess_fd,
gives an error on Windows. Skipping for now

3.  subprocess_context needs to serialize for Windows, like it does
for Mac.

Co-authored-by: lou.lawrence@kitware.com <lou.lawrence@kitware.com>
Co-authored-by: John Parent <john.parent@kitware.com>
2022-03-17 09:01:01 -07:00
Ben Cowan
81bc00d61f Adding basic Windows features (#21259)
* Snapshot of some MSVC infrastructure added during experiments a while ago.  Rebasing from spack/develop.

* Added platform and OS definitions for Windows.

* Updated Windows platform file to conform to new archspec use.

* Added Windows as a platform; introduced some debugging code.

* Added type annotations.

* Fixed copyright.

* Removed print statements.

* Ensure `spack arch` returns correctly on Windows (#21428)

* Correctly identify windows as 'windows-Windows10-AMD64'
2022-03-17 09:01:01 -07:00
Wouter Deconinck
b26b3bebb4
assimp: depends on pkgconfig; disable bundled dependencies (#29551)
* [assimp] depends_on pkgconfig and disable hunter, build zlib/minizip
2022-03-17 15:56:33 +01:00
Erik Schnetter
e174623edf
openssh: Update to version 8.9 (#29539) 2022-03-17 08:18:51 -06:00
Harmen Stoppels
55544950e2
PackageViewMixin: fix symlinks conflict issue (#29515)
`stat`'ing a file in the dst dir is the wrong thing to do, you should
`lstat` to capture broken symlinks.
2022-03-17 08:18:28 -06:00
Valentin Volkl
3544b0274f
fastjet: use mirror for sources (#29357)
as a workaround for https://github.com/spack/spack/issues/20050
2022-03-17 12:21:36 +00:00
haralmha
9ba41449a9
Add intermediate folder in lib to LD_LIBRARY_PATH (#29519) 2022-03-17 12:20:22 +00:00
Erik Schnetter
5fd05a8cbe
openssl: Deprecate old versions (#29554) 2022-03-17 06:02:56 -06:00
Jen Herting
5f3ab83e2d
New package: py-quart (#29142)
* [py-quart] created template

* [py-quart]

- added homepage
- added description
- added dependencies
- removed fixmes

* [py-quart] removed setuptools dependency
2022-03-17 05:42:31 -06:00
Wouter Deconinck
fa9894ae16
assimp: remove -Werror to allow compilation on Intel oneAPI (#29552) 2022-03-17 03:54:53 -06:00
Tom Scogland
3648adc2a7
python: allow versions with garbage suffix (#29543)
* python: allow versions with garbage suffix

Ubuntu 22.04 preview python prints version as 3.10.2+, the + causes
version parsing to fail and breaks detection.

* Add version comment

* match VALID_VERSION regex
2022-03-17 03:54:29 -06:00
Seth R. Johnson
4ef534b19b
libiconv,lmod: improvements for static builds (#29493)
* libiconv: compile with pic even when static build

* lmod: require shared lua

It seems to be unable to detect lua-posix when using a static lua:
```
Error: The follow lua module(s) are missing:  posix
```
2022-03-16 22:31:33 +01:00
Erik Schnetter
73287df7c5
openssl: Security update (#29538) 2022-03-16 13:47:04 -06:00
Jen Herting
993ce4c095
[py-configparser] added version 5.2.0 (#29136)
* [py-configparser] added version 5.2.0

* [py-configparser] fixed setuptools versions and added setuptools_scm
2022-03-16 14:13:08 -05:00
Jen Herting
4b9f216c11
New package: py-hypercorn (#29141)
* [py-hypercorn] created template

* [py-hypercorn]

- added homepage
- added description
- added dependencies
- removed fixmes

* [py-hypercorn] removed setuptools dependency and added version restriction for py-typing-extensions
2022-03-16 14:12:27 -05:00
Adam J. Stewart
508e3e03b9
py-numpy: add v1.22.3 (#29425) 2022-03-16 19:24:10 +01:00
Olivier Cessenat
9b0c2cb954
diffutils: work around for nvhpc not 11 compliant for __builtin_add_overflow (#28451) 2022-03-16 12:34:58 -04:00