Commit graph

9956 commits

Author SHA1 Message Date
Erik Schnetter
0f3ae864a5 asdf-cxx: new package (#14637) 2020-01-27 14:50:18 +01:00
Erik Schnetter
b7b27d3862 amrex: Update to version 20.01 (#14635)
Now using Github releases instead of git commits.
2020-01-27 10:07:46 +01:00
Sinan
0e86961b84 pygdal and gdal versions should be in lockstep (#14630) 2020-01-26 18:35:16 -06:00
Adam J. Stewart
71f47b3b26
Add py-vermin package (#14631) 2020-01-26 18:34:56 -06:00
Erik Schnetter
02e077a7fa simulationio: Correct HDF5 dependency bounds (#14626)
The HDF5 dependency bound was inverted. (How did this ever compile? There is a cmake check.)
2020-01-26 17:22:43 -06:00
Erik Schnetter
87c55b79c5 hwloc: New version 2.1.0 (#14627) 2020-01-26 17:22:26 -06:00
Erik Schnetter
06e100d5cc curl: New version 7.68.0 (#14625) 2020-01-26 17:06:38 -06:00
Adam J. Stewart
f8be90cf3f
Add TensorFlow 1.15.2 (#14624) 2020-01-26 15:41:09 -06:00
Erik Schnetter
a26e5caa57 h5cpp: Download from github release instead of git repo (#14573)
* h5cpp: Download from github release instead of git repo

* Correct typo in package description
2020-01-25 18:39:36 -06:00
Adam J. Stewart
cb3f4081a0
Add TensorFlow 2.0.1 (#14623) 2020-01-25 12:45:09 -06:00
Glenn Johnson
c700200959 Get vtk-8.2.0 to build (#14562)
This PR adds some extra dependencies needed for vtk-8.2.0. It also
handles the variable name changes to turn off some of the external
libraries.
2020-01-25 12:44:51 -06:00
Hadrien G
f569577747 acts-core: Add and adapt to ACTS v0.14.0 and v0.15.0 (#14580)
* Add and adapt to ACTS v0.14.0

* Add v0.15.0 too
2020-01-25 12:35:53 -06:00
Brian Homerding
1fd335d654 Removing flang variant from llvm package (#14600) 2020-01-25 12:26:11 -06:00
Adam Moody
1e09de73b7 libcircle: add v0.3 (#14611) 2020-01-25 12:22:21 -06:00
Greg Becker
a57edb7029 configure z3+python to build python libraries in its own prefix (#14604) 2020-01-24 21:16:48 -08:00
Glenn Johnson
71243f3f7b Get py-torch to build caffe2 (#14619)
* Get py-torch to build caffe2

This PR gets the py-torch package to build with caffe2, and closes
issue #14576. If building on a machine with CUDA but no GPU the build
will try to build with all compute capabilities. Older compute
capabilities are not supported so the build will fail. The list of
capabilities can be passed to the build using values set in the
cuda_arch variant. Likewise, conflicts are also set to catch if the
unsupported capabilities are listed in cuda_arch.

This PR also sets version constraints on using an external mkldnn for
newer versions. Currenly, only versions up to 0.4 use an external mkldnn
library. Also, the cuda variant is set to True, which restores
previous behavior.

* Update var/spack/repos/builtin/packages/py-torch/package.py

Fix typo.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Adjust conflicts

This commit adjusts the conflicts. There is an issue with the
cuda_arch=20 conflicts directive as there is a conflicting dependency
with any version >=1.1 and a cuda_arch=20 dependency specified in
CudaPackage that gets trapped first.

* Use a common message for conflicts

This commit adds a variable to contain the bulk of the message stringi
for the cuda_arch conflicts. This is used along with a version string
in the conflicts directives messages.

* Fix the strings

- Use a multiline string for the cuda_arch_conflict variable.
- No need for format() in the msg value.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-24 22:57:16 -06:00
Mathew Cleveland
35db2d05b7 py-opppy package: add version 0_1_2 (#14229) 2020-01-24 18:58:22 -08:00
iarspider
bb29932362 py-pygdal package: 2.4.0 depends on gdal 2.4.1 (#14075) 2020-01-24 18:34:37 -08:00
plamborn
f8e0f4251d libhio: remove autoreconf method (#14283)
The autoreconf is not necessary and can cause errors.
2020-01-24 18:20:02 -08:00
健美猞猁
9a6b3b3a07 New package: MBDyn (#14438) 2020-01-24 18:14:14 -08:00
Glenn Johnson
80745128b3 harfbuzz package: add conflict for @2.3.1: with intel compiler (#14386)
harfbuzz 2.3.1 (and presumably all future versions after it) does
not build with the Intel compiler
2020-01-24 18:05:50 -08:00
Sajid Ali
12a261523e New package: p3dfft3 (#14508) 2020-01-24 17:20:36 -08:00
Kevin Huck
33d35768e6 Fixing GCC compiler setting for PDT package 2020-01-24 17:03:52 -08:00
Kevin Manalo
6fd2c66022 IOR package: add version 3.2.1 (#14582) 2020-01-24 16:56:59 -08:00
Jordan Ogas
1c9337a5e4 charliecloud package: add version 0.13; remove older versions (#14591)
* Add version 0.13 and update to use Autotools build system
* Remove all versions prior to 0.13 (which do not use Autotools)
2020-01-24 16:55:55 -08:00
Piotr Luszczek
d646c8d8d5 magma: add new version 2.5.2 2020-01-24 15:27:01 -08:00
Jon Rood
d58390dbf7 Add version 0.6.3 of yaml-cpp. 2020-01-24 15:26:33 -08:00
Brian Van Essen
36fca2c29a Updated and cleaned up the recipe for the LBANN and Hydrogen packages. (#14612)
* Updated and cleaned up the recipe for the LBANN and Hydrogen packages.

* Flake8

* Added type test for catch2
2020-01-24 14:49:05 -06:00
Brian Van Essen
4a5835ef2c Added version for 10.2 compatibility (#14613)
* Added version for 10.2 compatibility

* Updated the preferred version
2020-01-24 09:30:38 -06:00
Seth R. Johnson
ca6e75c9f6 Use Spack target architecture to determine OpenBLAS target (#14380)
Openblas target is now determined automatically upon inspection of
`TargetList.txt`. If the spack target is a generic architecture family
(like x86_64 or aarch64) the DYNAMIC_ARCH setting is used
instead of targeting a specific microarchitecture.
2020-01-24 15:19:05 +01:00
Axel Huebl
b0fce56d5b
openPMD-api: adios_config to run env (#14610)
Popular CMake find-scripts for ADIOS1 search for this binary instead
of looking up `CMAKE_PREFIX_PATH`.
2020-01-23 17:35:45 -08:00
Adam J. Stewart
031fdfd7ca
Add TensorFlow 1.15.1 (#14614) 2020-01-23 16:25:30 -06:00
Hadrien G
80ea96312f ftgl: Move to frankheckenbach fork + CMakePackage (#14221)
* Try to switch to a newer fork of ftgl

* Allow ROOT to be more flexible about ftgl versions

* Turn ftgl into a CMakePackage

* Update ROOT ftgl dep since 2.1.3 isn't a thing anymore

* Please flake8

* Try to bring back the doc variant

* Comment it out instead of removing it
2020-01-23 11:43:11 -06:00
Hadrien G
1a385a5178 root: Fix root+x breakage from #11129 (#14224)
* Fix root+x breakage from #11129

* Separate out +opengl breakage

* Not strictly X11-related, but more breakage from  #11129

* Another X11 breakage found while building 6.08.x

* Don't put system headers in SPACK_INCLUDE_DIRS + deduplicate

* xextproto is only a dependency in +x builds
2020-01-23 11:42:25 -06:00
Mark W. Krentel
5053dfa259 binutils, libiberty: add version 2.33.1 2020-01-22 21:50:10 -08:00
Axel Huebl
910df8cb4e openPMD-api: Default +adios1 (#14599)
Enable the ADIOS1 backend by default.
2020-01-22 15:49:27 -08:00
Axel Huebl
7a0990903f MPark.Variant: Patch NVCC C++14 Build 2 (#14434)
Update the patch to fix builds with NVCC <= 10.2.89 with
the accepted PR for upcoming releases of the library.
2020-01-22 11:29:02 -08:00
Sam Gutiérrez
ffbb0efc81 libquo: Update default version from 1.3 to 1.3.1. (#14585) 2020-01-22 11:14:26 -08:00
Scott Wittenburg
8283d87f6a pipelines: spack ci command with env-based workflow (#12854)
Rework Spack's continuous integration workflow to be environment-based.

- Add the `spack ci` command, which replaces the many scripts in `bin/`

- `spack ci` decouples the CI workflow from the spack instance:
  - CI is defined in a spack environment
  - environment is in its own (single) git repository, separate from Spack
  - spack instance used to run the pipeline is up to the user
  - A new `gitlab-ci` section in environments allows users to configure how
    specs in the environment should be mapped to runners
  - Compilers can be bootstrapped in the new pipeline workflow

- Add extensive documentation on pipelines (see `pipelines.rst` for further details)
- Add extensive tests for pipeline code
2020-01-21 22:35:18 -08:00
Todd Gamblin
4d794d63b5
python: add debug variant to enable pydebug (#14584) 2020-01-21 15:09:41 -08:00
Adam J. Stewart
796722aeee
Add py-scipy 1.2.3 (#14583) 2020-01-21 15:29:50 -06:00
Glenn Johnson
900161d182 Update and fix samtools (#14507)
* Update and fix samtools

This PR adds samtools-1.10 and sets the htlib directory so that the
spack built htslib can be used. This PR also arranges the dependencies
so that the htslib sequence is grouped on its own. Finally, the bzip2
dependency is removed and python and perl run dependencies are added.

* Fix samtools when built with ncurses+termlib

* The CI flake8 tests require lowercase variable

Interestingly, this did not show up when I ran `spack flake8` locally.
2020-01-21 15:24:39 -06:00
Michael Kuhn
54ecc4e504 cmake: Fix patch checksum (#14542)
Add patch locally to make sure checksum cannot change again.
2020-01-21 13:05:42 -06:00
Glenn Johnson
5db5040871 Use CudaPackage mixin for py-theano (#14577)
This PR adds the CudaPackage mixin class to py-theano. This replaces the
`gpu` variant with the `cuda` variant.
2020-01-21 09:27:41 -06:00
Adam J. Stewart
d10505678f
Add new kcov package (#14574)
* Add new kcov package

* Fix linking error and add test
2020-01-20 19:22:05 -06:00
Sean Smith
f23a136d83 Update AWS ParallelCluster to 2.5.1 (#14571)
Signed-off-by: Sean Smith <seaam@amazon.com>
2020-01-20 15:19:28 -06:00
Cyrus Harrison
ca26eb6923 add conduit 0.5.1 release and allow conduit to build against statically linked python (#14559) 2020-01-19 20:22:03 -06:00
Olaf Mersmann
dbb149cd7f capnproto: New package. (#14557)
* capnproto: New package.

* capnproto: Fix flake8 errors.

* Remove characters invalid in Python 2.
2020-01-19 17:20:22 -06:00
Simon Pintarelli
818b00e302 py-voluptuous update versions (#14556) 2020-01-19 10:39:11 -06:00
Howard Pritchard
ba22af0de0 openmpi: swat btl/uct ucx 1.7 bug (#14522)
Unfortunately UCX 1.7.0 is appearing in RPMS before it's officially released.
There's a problem with Open MPI 4.0.x where x < 3 and this version of UCX,
namely that the UCT BTL fails to compile.

See https://github.com/open-mpi/ompi/issues/7128

This patch works around the problem by disabling the build of the UCT BTL
for releases 4.0.0 to 4.0.2.

add hppritcha (me) as maintainer

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-01-18 13:52:26 -06:00