Commit graph

24070 commits

Author SHA1 Message Date
snehring
89044ff5d5
delly2: updating to v0.9.1 (#28000) 2021-12-16 06:47:11 +01:00
Thomas Green
315f01fc96
meep: fixed dependencies (#27574)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-16 06:44:26 +01:00
snehring
e99aff93e1
samtools: fixing build issue due to change in 1.14 (#28024) 2021-12-16 06:34:22 +01:00
AMD Toolchain Support
42677ded8e
Fix for OpenFOAM pthread issue for AOCC 3.2 (#27949)
* Fix for OpenFOAM pthread issue for AOCC 3.2

* addressing the review comments

* updating when command for aocc v3.2.0 and above

Co-authored-by: mohan babu <mohbabul@amd.com>
2021-12-15 21:45:17 -06:00
Dennis R Kennetz
d375a7ea0a
pcre package: update download URL (#27867)
* ftp url is dead as stated in the home page. The sha256 is the same in the sourceforge dl.
* added myself as a maintainer per spackbot's rec
2021-12-15 18:58:13 -08:00
Jen Herting
3b4c622661
New package: py-copulas (#27920)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-15 18:56:13 -08:00
Erik Schnetter
ba87593afd
mpitrampoline package: add versions up to 2.8.0 (#27928) 2021-12-15 18:53:03 -08:00
Adam J. Stewart
af1ec6275d
py-matplotlib: add v3.5.1 (#27929) 2021-12-15 18:52:21 -08:00
Adam J. Stewart
3ff2fb43cf
py-pandas: add v1.3.5 (#27930) 2021-12-15 18:52:02 -08:00
Wouter Deconinck
a148e37c4c
assimp package: add version 5.1.3 (#27934) 2021-12-15 18:51:01 -08:00
Thomas Gruber
4d876bac0c
likwid package: add version 5.2.1 (#27935) 2021-12-15 18:49:19 -08:00
Asher Mancinelli
114b35144e
ExaGO package: add version 1.2.0; update dependency constraints (#27961)
* PETSc is a core dependency, yet we left a variant for PETSc.
  This was removed, and ExaGO always depends on PETSc. The CMake
  arguments were updated accordingly.
* camp+cuda is only a dependency when we build with RAJA and CUDA.
2021-12-15 18:23:36 -08:00
snehring
69184dc390
opa-psm2 package: add version 11.2.206 (#27968) 2021-12-15 18:13:22 -08:00
Mikhail Titov
70aea4cd82
RADICAL-Cybertools packages: add versions (#28002)
* py-radical-entk: add version 1.9.0
* py-radical-pilot: add version 1.10.1
* py-radical-utils: add version 1.9.1
* py-radical-utils: requires py-pymongo less than version 4
2021-12-15 17:53:05 -08:00
Adam J. Stewart
e091eacde0
New package: py-trojanzoo-sphinx-theme (#27972) 2021-12-15 17:48:43 -08:00
Adam J. Stewart
9447ec9600
py-sphinx package: add version 4.3.1 (#27933) 2021-12-15 16:22:22 -08:00
iarspider
351a1d8d37
New package: py-pysqlite3 (#28020)
* New package: py-pysqlite3

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-15 14:35:07 -07:00
iarspider
b0f996c8ef
New package: py-prwlock (#28017) 2021-12-15 12:00:28 -06:00
iarspider
4de197f778
New package: py-pybrain (#28019) 2021-12-15 11:59:04 -06:00
iarspider
bd7d3faa10
New package: py-parsimonious (#28015) 2021-12-15 11:29:36 -06:00
iarspider
bc152da68b
New version: py-prompt-toolkit 3.0.24 (#28016) 2021-12-15 11:17:25 -06:00
Harmen Stoppels
72ca7d6ee5
Revert "patches: make re-applied patches idempotent (#26784)" (#27625)
This reverts commit c5ca0db27f.
2021-12-15 08:56:03 -08:00
Harmen Stoppels
acc688b5e1
libtree: add v3.0.0 (#28011) 2021-12-15 17:38:10 +01:00
Adam J. Stewart
0cf3176462
open3d: add new package (#27577) 2021-12-15 17:34:22 +01:00
kwryankrattiger
116e1bb6cb
mesa: check correct LLVM variant for dylib (#27862) 2021-12-15 16:37:35 +01:00
Wouter Deconinck
9c1be2a510
mesa: add v21.2.6, v21.3.1 (#27796) 2021-12-15 14:13:52 +01:00
Greg Becker
5319b6e3b1
Add option to minimize full debug cores. include warning message about performance (#27970)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-15 08:52:53 +01:00
iarspider
ce94a786ae
New package: py-neurolab (#27996)
* New package: py-neurolab

* Update package.py

* Update package.py
2021-12-14 15:23:06 -07:00
iarspider
25c29d277f
New package: py-lizard (#27994)
* New package: py-lizard

* Update package.py
2021-12-14 14:44:19 -07:00
iarspider
e51337fcd9
New package: py-nbdime (#27995) 2021-12-14 15:22:24 -06:00
Zack Galbreath
3139894794
ci: Catch Exceptions when attempting to register a CDash build (#27883)
This PR also slightly changes the behavior in ci_rebuild().
We now still attempt to submit `spack install` results to CDash
even if the initial registration failed due to connection issues.

This commit follows in the spirit of #24299. We do not want `spack install`
to exit with a non-zero status when something goes wrong while attempting to
report results to CDash.
2021-12-14 14:18:08 -07:00
iarspider
5bbb63ed93
New package: py-law (#27993) 2021-12-14 15:04:46 -06:00
iarspider
bc618c2c6c
OpenLDAP package: update dependencies for 2.6.0 (#27830)
Update a number of dependency constraints for @2.6.0: (including
adding new optional dependency package wiredtiger).
2021-12-14 11:27:02 -08:00
downloadico
97a1d48512
Abinit package: add option to install tests (#27842) 2021-12-14 11:04:28 -08:00
Harmen Stoppels
9ec638c7bb
Add libtree 3.0.0-rc9 (#27990) 2021-12-14 14:17:38 +01:00
iarspider
c1d51593d1
New packages: py-keras2onnx, py-onnxconverter-common (#27962)
* New packages: py-keras2onnx, py-onnxconverter-common

* Update package.py (#18)

* Update package.py

* Update package.py
2021-12-13 12:47:27 -07:00
Massimiliano Culpo
948bc98fa6
Add a CI job to audit all the packages in the built-in repository (#27945)
* Add a CI job to audit all the packages in the built-in repository

* flecsi: fixed typo for dependency on legion

* py-pythonqwt: fix a typo in variant name

* sollve: removed a conflict with a non-existing variant

* acts: fixed use of wrong variant in dd4hep

Also removed duplicated variant declaration in dd4hep

* aoflagger: update variant of a dependency

Issues introduced indirectly in #22925

* camellia: removed unused variant

Issue introduced indirectly in #26150

* cbtf-*: remove cti variants and dependency on mrnet+cti

Issue introduced in #14178

* flecsale: update variants to match flecsi

Issue introduced in #11679

* grnboost: fixed issue with non-existing variant in a dependency

This package possibly never worked since #8763

* nalu: fixed issue with non-existing variant in a dependency

* open-iscsi: fixed issue with non-existing variant in a dependency

* openspeedshop-*: remove use of non-existing mrnet+cti variant

* percept: fixed issue with non-existing variant in a dependency

* phyluce: fixed issue with non-existing variant in a dependency

Issue introduced in #12952

* phyluce: fixed issue with non-existing variant in a dependency

Issue introduced in #22340
2021-12-13 10:44:15 -08:00
Scot Halverson
28d31316b7
CPU Architecture support (#27924)
* CPU Architecture Support

This commit removes the `native` variant in favor of Spack's built-in support for specifying a target cpu architecture.  It also passes this information to the Legion build system so that it correctly passes the architecture to GASNet when built internally

* fixing whitespace

* Update package.py

based on a conversation with @streichler, this change sets `BUILD_MARCH` to an empty string, which will prevent legion's CMake build system from inserting `-march=native` and allow Spack to provide the correct architecture flags.

* Update package.py

adding a comment on what problem this MR solves.

* Update package.py

formatting
2021-12-13 10:06:57 -08:00
iarspider
f876813531
New package: py-histbook (#27956) 2021-12-13 11:55:57 -06:00
iarspider
ec8ef9d292
New package: py-histogrammar (#27957) 2021-12-13 11:55:09 -06:00
iarspider
7836b60825
New package: py-jupyter-server-mathjax (#27958) 2021-12-13 11:54:01 -06:00
Manuela Kuhn
17367a702e
r-packrat: add 0.7.0 (#27901) 2021-12-13 11:19:39 -06:00
Manuela Kuhn
1bd2c40228
r-rsconnect: add 0.8.17 (#27900) 2021-12-13 11:19:18 -06:00
Manuela Kuhn
71e71c0b60
r-vroom: add 1.5.7 (#27874) 2021-12-13 11:18:38 -06:00
Manuela Kuhn
f920976fa6
r-r6: add 2.5.1 (#27871) 2021-12-13 11:16:47 -06:00
eugeneswalker
26dcb0ffc4
vtk-m +cuda: conflicts with cuda_arch=none (#27916) 2021-12-13 08:46:09 -08:00
Harmen Stoppels
f6802b733a
Install dir creation message demoted to "debug" level (#27911) 2021-12-13 11:45:31 +01:00
iarspider
7b9ce3a940
New package: py-hep-ml (#27909) 2021-12-11 14:41:08 -07:00
iarspider
dc88538e80
New package: py-grpcio-tools; add new version of py-grpcio (#27907) 2021-12-11 14:35:07 -07:00
Axel Huebl
9875a0e228
PICMI: 0.16 & 0.18 & WarpX 1D (#27876)
* PICMI: 0.16 & 0.18 & WarpX 1D

Update the `py-picmistandard` and the latest WarpX release.
Preparing 1D support (testable inputs coming for 22.01+).

* Fix style: overlong line

* Update pypi example link

* Fix requirement ranges

* WarpX 21.12: Update Patch

Follow-up from
  https://github.com/ECP-WarpX/WarpX/pull/2646

* fix style

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-11 14:14:00 -07:00