It turns out there are certain cases where having Open MPI use an external hwloc messes up other
applications that also rely on hwloc, but a different version.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
* VTK-m: No `pic` variant
A leftover conflict between `shared` and `pic` variants, the
latter is not part of the package anymore, leads to a solver
error with clingo.
This removes the outdated conflict section.
* VTK-m: Kokkos AMD GPU variant changed
Set the minimun C++ standard for LBANN, Hydrogen, and DiHydrogen to
C++17. The minumim C++ standard for Aluminum is C++14. Add new
versions for Aluminum, Hydrogen, and DiHydrogen. Added support for
high performance linkers in LBANN recipe (gold and lld). Added
variants to LBANN for enabling embedded Python support independently
from the Python front end.
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions
* Update var/spack/repos/builtin/packages/py-fenics-instant/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Keep spack.store.store and spack.store.db consistent in unit tests
* Remove calls to monkeypatch for spack.store.store and spack.store.db:
tests that used these called one or the other, which lead to
inconsistencies (the tests passed regardless but were fragile as a
result)
* Fixtures making use of monkeypatch with mock_store now use the
updated use_store function, which sets store.store and store.db
consistently
* subprocess_context.TestState now transfers the serializes and
restores spack.store.store (without the monkeypatch changes this
would have created inconsistencies)
The dependencies needed a little clean up as several dependencies are
only needed for the +X variant. This PR consolidates all of the
dependencies that actually require +X and explicitly disables them when
~X to prevent accidentally picking up system libraries.
- modified the description of the +X variant
- arranges dependencies to group them
- added missing dependency on xz
- removed unneeded dependencies
- freetype
- glib
- set dependencies when +X
- cairo
- jpeg
- libpng
- libtiff
- tcl/tk
- R uses tcl/tk together, so only tk needs to be depended on, and only
when +X
- moved tcl/tk resources to with/without-x test
- added explicit with/without settings for
- cairo
- jpeglib
- libpng
- libtiff
- tcltk
* py-typing: new version, avoid issues with newer versions of python
https://pypi.org/project/typing/
"For package maintainers, it is preferred to use
typing;python_version<"3.5" if your package requires it to support
earlier Python versions."
* update conflict version / more message detail
* change the depends_on, leave a comment suggesting correct usage
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
Add versions 2020.12 and 2021.01. The viewer and trace viewer are now
integrated into a single program and one tar ball. Now available on
arm/aarch64 and now uses Java 11.
Update some things in hpctoolkit to prepare for a 2021.02.x release:
1. allow binutils to be built with +nls.
2. require libmonitor to be built with +dlopen.
3. allow rocm in more than just develop branch.
4. remove some conflicting setenv's in hpctoolkit module.
* add new flag when compiling mumps with %gcc@10.
* Fix style
* Try to fix formatting
* Use flag_handler approach suggested by @michaelkuhn
in the PR review.
* Delete former approach
* Another style issue
* Add another space
* More fixes
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.
* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
package for the time being.
* There is only one version, no need to prefer it.
* fixed install with ver 3 and python 3.0
* replaced @3 with @2.999
* [py-pyspark] added version requirements for py-py4j
* [py-pyspark] all versions require at least version 2.7 of python
* [py-pyspark] fixed comma syntax
Co-authored-by: Sid Pendelberry <sid@rit.edu>
The GROMACS package embeds references to its build tool chain.
Use the Spack utilities to make sure these references are correct
outside of the isolated Spack build environment.
cmake was added as a runtime dependency to meson in #20449. This
introduces an unnecessary implicit cmake dependency, which increases
build time for meson considerably. cmake is only one of many methods for
finding dependencies (pkg-config, qmake etc.), which are also not
runtime dependencies of meson. Add cmake as a build dependency to mesa
instead.
* [py-moviepy] created template
* [py-moviepy] added dependencies
* [py-moviepy] removed fixmes, added homepage and description
* [py-moviepy] updated to pypi and updated checksum
* [py-moviepy] added setuptools dependency
* [py-moviepy] more specific version limit
* [py-moviepy] added checksum for version 1.0.1
* [py-moviepy] numpy restriction not nesessary here
* 3DTK: add new package
* Add missing opencv variants
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
* Fix cmake version req, add eigen dep
* Prefer trunk version
* Tell 3dtk where to find eigen
* Fix installation
* Fix installation
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
This PR fixes the case where groff fails to build if the spack install
path is really long. There are a couple of perl scripts that get built,
and used, during the build phase that will fail when the perl
interpreter line is too long. Filtering the lines will not work because
the files don not exist after the configure phase and patching after the
build phase is too late. This PR runs the scripts explicitly with the
spack perl via the $(PERL) variable in the call to the script.
* Procedure to deprecate old versions of software
* Add documentation
* Fix bug in logic
* Update tab completion
* Deprecate legacy packages
* Deprecate old mxnet as well
* More explicit docs
