arrow: add missing dependency for python build
The Parquet library moved into the Arrow organisation, hence add a
parquet flavor and adapt dependencies.
* flux: ensure git tags are always available
previous `--unshallow` would only run when `--depth 0` was used. If
1--single-branch` was used, then the `.git/shallow` file would not exist
and `--unshallow` would not work.
add v0.6.0 and update dependencies accordingly
update dependencies to match latest flux versions
adds support for python 3
increases precision of czmq version required for older flux versions
adds new lz4 dependency
* Add stat version 4.0.1
* stat 4.0.1: requires py-xdot
* stat versions at or above 4.0.0 dont require python 2 (it still
requires python but can build with 2 or 3)
* stat versions at or above 4.0.0 dont require py-pygtk and py-enum34
* Replace py-xdot version 0.9.1 with 1.0
* py-xdot: use lib directory vs. lib64 for atk dependency
* Add version 18.9.0 (w/CMake)
* Add version dependent install methods to handle transition from
Make-based package (17.1) to CMake-based package, using the NEST
package as an example
* Remove unnecessary build_targets method for older Make-based
version
* Don't retrieve just the C/Fortran interfaces for netlib-lapack -
blas/lapack libs are now handled the same for all implementations
* Remove netlib-lapack detection patch
* add new version 3.1.0
* add conflict for parmetis without mpi
* strumpack >= 3.1.0 uses -DTPL_ENABLE_<package> instead of
-DSTRUMPACK_USE_<package>
* require cmake at least 3.2
* Added support for the Aluminum library to LBANN and Hydrogen. Also
fixed several bugs in the grouping of dependencies of both packages.
* Updated the conduit package to have the proper dependency on the
python variant.
* Added new versions for NCCL
* Fixed a bug in how Hydrogen set the path for OpenBLAS.
* Added support for conduit in LBANN.
* vtk: add variants for Xdmf IO support, ffmpeg support, and MPI
* vtk: depends on boost when Xdmf support is enabled
* vtk: add backported patch for python3.7
* vtk: New policy only for cmake >= 3.12
* mesa: add py-argparse dependency (for build)
* lz4: use MOREFLAGS instead of LIBS to add -lrt
scalasca actually requires cubew, not the full cube bundle. However,
cubew@4.4 causes the build of previous versions to fail because there is
no cube-config script anymore.
- remove the old LGPL license headers from all files in Spack
- add SPDX headers to all files
- core and most packages are (Apache-2.0 OR MIT)
- a very small number of remaining packages are LGPL-2.1-only
- This is bundled into one commit to make it easy to revert if we do get
consent from peetsv's company to relicense these contributions.
- Revert "dialign-tx adding patch for gcc@5.4.0 (#6413)"
- This reverts commit 09eeb991a2.
- Remove the following LGPL-2.1 packages because we have not gotten
consent to relicense them:
- fast-gbs
- igv
- metasv
- perl-xml-libxml
- py-cnvkit
- py-crossmap
- py-pybedtools
- py-pyfaidx
- py-pyvcf
- py-vmd-python
- r-cghflasso
- r-dismo
- r-proc
- r-spatial
- r-utf8
* omega-h: fix dependencies
1. Remove Gmodel altogether. Omega_h doesn't
actually call Gmodel for anything, it was
more or less just doing additional unit
testing for Gmodel
2. Make Trilinos off by default. Most codes do
not need the ParameterList interface, and
Kokkos through Trilinos is not well explored
in Spack
3. Use modern CMake style to choose the zlib
dependency
