Commit graph

26719 commits

Author SHA1 Message Date
Valentin Volkl
614a014948
feynhiggs: add new package (#31306)
* feynhiggs: add new package

* Update var/spack/repos/builtin/packages/feynhiggs/package.py

* Update var/spack/repos/builtin/packages/feynhiggs/package.py
2022-06-27 21:08:02 +00:00
Peter Scheibel
f7ef064bdc
spack external find: handle manifest with bad permissions (#31201)
Allow `spack external find` (with no extra args) to proceed if the manifest file exists but
without sufficient permissions; in that case, print a warning. Also add a test for that behavior.

TODOs:

- [x] continue past any exception raised during manifest parsing as part of `spack external find`, 
      except for CTRL-C (and other errors that indicate immediate program termination)
- [x] Semi-unrelated but came up when discussing this with the user who reported this issue to
      me: the manifest parser now accepts older schemas 

See: https://github.com/spack/spack/issues/31191
2022-06-27 19:26:12 +00:00
Mark Olesen
0080f6b7a5
openfoam: v2206 release. v2106/2012/2006/1912 patched to 202220610 (#31317)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2022-06-27 13:17:36 -06:00
Pariksheet Nanda
0471c1ad5d
ioapi: adapt to upstream's build system changes (#28247) (#31149)
Co-authored-by: Pariksheet Nanda <pnanda@necrosis.micro.med.umich.edu>
2022-06-27 11:28:46 -07:00
sayefsakin
1ba4ea5f20
cuda 11 support for hiop (#31282)
Co-authored-by: Sayef Azad Sakin <ssakin@moonshot.cels.anl.gov>
2022-06-27 11:24:07 -07:00
Jen Herting
8be7257990
[sratoolkit] added version 3.0.0 (#31322) 2022-06-27 17:40:20 +00:00
Adam J. Stewart
6628272765
openexr: add v3.1.5, CMake support (#31292) 2022-06-27 11:09:35 -06:00
Adam J. Stewart
78882c5569
brunsli: add new package (#31240) 2022-06-27 18:44:03 +02:00
Adam J. Stewart
7bce92ad46
HDF: fix build with Apple Clang (#31235) 2022-06-27 18:37:13 +02:00
Adam J. Stewart
a6b0de3beb
py-torch: add M1 GPU support (#31283) 2022-06-27 18:21:49 +02:00
Massimiliano Culpo
11d71ca85e
Rename os_facts.lp to os_compatibility.lp (#31206)
Follow-up from #31170
2022-06-27 09:15:25 -07:00
Harmen Stoppels
5698846619
Fix pigz%nvhpc build (#31227)
nvc doesn't know this flag: `-Wno-unknown-pragmas`, it doesn't hurt to
remove the specific warning flags, from:

```
-O3 -Wall -Wextra -Wno-unknown-pragmas -Wcast-qual
```

to:

```
-O3 -Wall
```
2022-06-27 14:41:40 +02:00
Luke Diorio-Toth
f09f834a8f
py-gtdbtk and fastani: new packages (#31268) 2022-06-24 07:49:07 -07:00
Cody Balos
147f39d7aa
Fix typo in documentation note about concretizer:unify (#31246) 2022-06-24 11:31:43 +02:00
Adam J. Stewart
9fad3ed5f1
giflib: fix macOS build (#31234) 2022-06-24 11:28:44 +02:00
Adam J. Stewart
1375b1975b
librttopo: add missing Autotools deps (#31252) 2022-06-24 11:28:12 +02:00
Adam J. Stewart
c533612ab6
sfcgal: fix boost build issues (#31254) 2022-06-24 10:22:56 +02:00
Adam J. Stewart
e5cc3c51d1
py-numpy: add v1.23.0 (#31250) 2022-06-24 10:20:04 +02:00
Massimiliano Culpo
70650cacbd
ASP-based solver: rescale target weights so that 0 is always the best score (#31226)
fixes #30997

Instead of giving a penalty of 30 to all nodes when preferences
are not package specific, give a penalty of 100 to all targets
of a node where we have package specific preferences, if the target
is not explicitly preferred.
2022-06-23 23:33:36 -07:00
Brian Van Essen
d8a5638d9f
Fixed the range on Catch2 to avoid v3.x (#31242) 2022-06-23 16:10:27 -07:00
Luke Diorio-Toth
158f6ddb14
py-instrain: adding new package (#31244)
* py-instrain: adding new package

* py-instrain: fixed style

* removed unnecessary setuptools and numba version restrictions

* fixed pandas version
2022-06-23 22:58:45 +00:00
haralmha
86d1a6f2fc
hadoop-xrootd: Add clang conflict (#31215)
* hadoop-xrootd: Add clang conflict

* Flake8

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-23 16:45:39 -06:00
Mikael Simberg
ca10ff1649
Allow using mimalloc 2 in pika and HPX (#31260) 2022-06-23 15:33:03 -07:00
Adam J. Stewart
19175b9bab
keyutils: add macOS conflict (#31236) 2022-06-23 16:13:37 -06:00
Richard Berger
7d64a8e81f
add charliecloud 0.27 and fix master install (#31247)
* charliecloud: custom autoreconf and require py-pip and py-wheel for master

* charliecloud: add 0.27

* charliecloud: add minimum py-pip version
2022-06-23 15:03:03 -07:00
Adam J. Stewart
a0b68a0baa
rpcsvc-proto: add v1.4.3 (#31253) 2022-06-23 14:59:55 -07:00
Harmen Stoppels
b7e0692dfa
libfuse: 3.11.0 (#31259) 2022-06-23 14:55:47 -07:00
Maciej Wójcik
8cc62ef916
Add some GROMACS versions (#31264)
* gromacs: add recent version

* gromacs-swaxs: add recent versions

* gromacs-chain-coordinate: add recent version
2022-06-23 14:53:32 -07:00
Stephen Sachs
2363aba710
[lammps] Rename master -> develop branch (#31263)
https://github.com/lammps/lammps/pull/3311

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-06-23 14:40:55 -07:00
Weston Ortiz
5a0c56229c
goma: update package with new version and options (#31267) 2022-06-23 14:10:14 -07:00
AMD Toolchain Support
96bb72e412
Updated sha256 value for amdlibflame (#31269) 2022-06-23 14:07:09 -07:00
Adam J. Stewart
7c977733f1
py-pandas: add v1.4.3 (#31270) 2022-06-23 14:05:49 -07:00
Brian Van Essen
d48a760837
Add the rocm tag to packages from the Radeon Open Compute Platform. (#31187)
* Add the rocm tag to packages from the Radeon Open Compute Platform.

* Added more packages from the ROCm software distribution based on
reviewer feedback.

* Updated tags based on reviewer feedback
2022-06-23 09:10:01 -07:00
Brian Van Essen
c64298a183
Enable MVAPICH2 to use the mpichversion executable to detect externals (#31245)
This is an an alternative to mpiname.
2022-06-23 07:41:25 +02:00
Ben Boeckel
31d89e80bc
protobuf: add 21.1 (#31249)
Older versions have compile errors under newer compilers (e.g., gcc-12).
2022-06-22 19:33:54 -06:00
Luke Diorio-Toth
2844f1fc45
added racon conflict with new versions of gcc (#31243) 2022-06-22 18:00:27 -07:00
Vicente Bolea
8b85f8ec58
vtk-m: change smoke test (#29113) 2022-06-22 18:58:03 -06:00
eugeneswalker
7ef52acfce
relocation: x-pie-executable needs relocation (#31248) 2022-06-22 23:55:28 +00:00
Nicholas Sly
c3fecfb103
Add --disable-wrapper-runpath to openmpi when ~wrapper-rpath to avoid build time error. (#31221)
Co-authored-by: Nicholas Cameron Sly <sly1@rzalastor2.llnl.gov>
2022-06-22 16:57:55 -06:00
Adam J. Stewart
ef278c601c
spack create: fix for no URL (#31239) 2022-06-22 18:45:03 +00:00
JeromeDuboisPro
5e9a8d27f7
add first version of py-pyrr package (#31211)
* add first version of py-pyrr package

* added license

* update license HEADER

* Remove preferred as there is only one version available

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Better specify dependency type

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove useless variable license

Co-authored-by: Jérôme Dubois <jerome.dubois@cea.fr>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-06-22 10:36:49 -07:00
Manuela Kuhn
ffc90f944c
py-bids-validator: add 1.9.4 (#31230) 2022-06-22 10:35:57 -07:00
Harmen Stoppels
699c0cf9a0
squashfs-mount: new package (#31225) 2022-06-22 14:31:20 +02:00
Massimiliano Culpo
55cac3b098
Remove update functions used to ease the transition in v0.16 (#31216) 2022-06-22 11:15:57 +02:00
Tamara Dahlgren
35d07a6f18
Add missing '?full_index=1' to meson 9850.patch URL (#31222)
* Add missing '?full_index=1' to meson 9850.patch URL

* Correct checksum

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-06-22 08:56:49 +02:00
Adam J. Stewart
1f42a5e598
py-geopandas: add v0.11.0 (#31218) 2022-06-21 18:14:04 -07:00
Adam J. Stewart
967463432b
py-shapely: env vars always needed (#31217) 2022-06-21 18:11:36 -07:00
Howard Pritchard
bc03b5caaf
meson: fix to recognize intel oneapi compiler (#30605)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-06-21 10:47:46 -07:00
Massimiliano Culpo
649760dc1a
Canonicalize positional argument to spack bootstrap mirror (#31180)
fixes #31139
2022-06-21 19:25:01 +02:00
Adam J. Stewart
77118427b1
grep: add +pcre variant (#31204) 2022-06-21 10:06:42 -07:00