Commit graph

10223 commits

Author SHA1 Message Date
healther
a03674ebbd make vim python3 compatible (#6925) 2018-01-14 15:39:33 -06:00
David Pérez-Suárez
0adcb610fe Updated catch to newer version (up to 2.1.0) (#6933)
Also updated all the sums from previous versions
2018-01-14 15:39:10 -06:00
healther
d30dc2bf15 Add version 1.81 of cppcheck (#6912) 2018-01-14 08:14:55 -06:00
Simone Bnà
e2908af9b4 Catalyst package (#6834)
* catalyst: added catalyst package

* catalyst: missing libx11 and libxt dependencies

* catalyst: added std cmake args

* catalyst: override paraview git describe cmake variable

* catalyst: fixed flake8 errors
2018-01-13 22:20:39 -06:00
Michael Kuhn
df7876ab54 Do not construct path to perl command manually (#6927)
Instead, use spec['perl'].command.path.
2018-01-13 22:10:42 -06:00
healther
589ea856a5 Add PyNN 0.9.1 (#6926) 2018-01-13 22:10:10 -06:00
healther
b3c96e2e40 Update checksum for version 0.5.3 of yaml-cpp (#6924) 2018-01-13 22:09:36 -06:00
healther
47b554a959 Add py-pyflakes versions up to 1.6.0 (#6923) 2018-01-13 22:09:17 -06:00
healther
b87f9ae5d4 Add py-pycodestyle versions up to 2.3.1 (#6922) 2018-01-13 22:08:51 -06:00
healther
7c4a193b3f Update py-neo to 0.5.2 (#6921) 2018-01-13 22:08:38 -06:00
healther
a2d7939e27 Add py-mccabe versions up to 0.6.1 (#6920) 2018-01-13 22:08:18 -06:00
healther
176814373c add version 1.26 to py-git-review and fix run_env (#6919)
* Update py-git-review to version 1.26.0

* Fix py-git-review package

TypeError: object of type 'Version' has no len()
2018-01-13 22:08:05 -06:00
healther
c6a7979cfd Update py-flake8 to 3.5.0 (#6918) 2018-01-13 22:07:46 -06:00
healther
8c648a73bc py-doxypy conflicts python3 (#6916)
* py-doxypy conflicts python3

* change conflicts to depends_on
2018-01-13 22:07:14 -06:00
healther
25bcabec98 Update py-autopep8 to 1.3.3 (#6914)
* Update py-autopep8 to 1.3.3

* Update package.py
2018-01-13 22:05:44 -06:00
Michael Kuhn
d8b03d1e37 glib: Fix python handling (#6910)
Newer versions of glib require python. Fix up the python sbangs the same
way we already fix up the perl ones.

Fixes #6899
2018-01-13 08:50:06 -06:00
healther
e8df0ddce4 add patch for gccxml with gcc@5: (#6913) 2018-01-13 08:46:00 -06:00
healther
715a173688 Update py-elephant to 0.4.1 (#6917) 2018-01-13 08:44:43 -06:00
scheibelp
278901c02c
Handle test dependencies that are python extensions (#6904)
See #6794

This fixes cases where test-only dependencies were omitted from
consideration when modifying the environment at build time. This
includes an update to the python package definition to add
testing-related python extensions to its specialized environment
setup.
2018-01-12 19:02:54 -08:00
Geoffrey Oxberry
761b8f76d2 coinhsl: add version 2014.01.10 (#6909)
* coinhsl: add version 2014.01.10 (stable)

* coinhsl: make 2014.01.10 preferred version

Make Harwell Subroutines Library for IPOPT version 2014.01.10 the
preferred version because it is the latest stable version released.

* coinhsl: add option to link w/ BLAS libraries
2018-01-12 17:27:52 -06:00
scheibelp
f4101550d1
Relax conflict checks for externals (#6907)
This updates the conflict-checking logic to require that the conflict
spec matches exactly and that all fields mentioned in the conflict
spec are present in the concretized spec in order to report a
conflict. This will automatically skip all conflict checks for
dependencies of externals (since externals strip dependencies). This
will not affect non-external packages since all fields and
dependencies are fully specified for such packages.
2018-01-12 10:53:11 -08:00
健美猫
9e3f8c0d79 A new package: ethminer. (#6908) 2018-01-12 07:50:07 -06:00
Adam J. Stewart
03ff2a32ae
Reduce verbosity of build tests (#6901) 2018-01-11 16:14:26 -06:00
Michael Kuhn
070bcab7f2 libbson, libmongoc: Update to 1.9.1 (#6900) 2018-01-11 10:19:44 -06:00
stefanosoffia
5dd7baa61d Updated misc devel tools. (#6897) 2018-01-11 10:06:53 -06:00
Gregory Lee
5d49fe4b4c fix ips 2018 vtune directory name (#6893) 2018-01-11 09:51:14 -06:00
lingnanyuan
637165eef8 r-biocstyle: Create new package. (#6503)
* r-biocstyle: Create new package.

* r-biocstyle: add version constraints.
2018-01-10 23:13:31 -06:00
lingnanyuan
88d9e6bd21 r-bookdown: Create new package. (#6504)
* r-bookdown: Create new package.

* r-bookdown: add version constraints.
2018-01-10 23:13:12 -06:00
lingnanyuan
d2eecf5774 r-rprojroot: Create new package. (#6505)
* r-rprojroot: Create new package.

* r-rprojroot: add version constraints.

* r-rprojroot: Add list_url.
2018-01-10 23:12:54 -06:00
lingnanyuan
384b8f43a2 r-rmarkdown: Update version to 1.7 (#6506)
* r-rmarkdown: Update version to 1.7

* r-rmarkdown: add version constraints.
2018-01-10 23:12:35 -06:00
Massimiliano Culpo
a4c4739626 Travis: upload the coverage data as part of the script (#6877)
According to Travis docs the exit code of after_success doesn't affect
the build result. Instead, uploading the coverage data as the last step
of the script will cause the job to fail if the command exits with
non-zero.

https://docs.travis-ci.com/user/customizing-the-build/#Breaking-the-Build
2018-01-10 20:41:19 -06:00
snehring
d07b83237d discovardenovo: adding new package (#6888) 2018-01-10 20:40:41 -06:00
Adam J. Stewart
d7920ab4f3
Keep track of source and versions for external libraries (#6803)
* Keep track of source and versions for external libraries

* Note source of more obscure libraries

* We aren't upgrading jsonschema after all

* Add note on modifications made to pytest
2018-01-10 19:14:19 -06:00
Adam J. Stewart
57c71aea89
Update to pytest 3.2.5 (#6801)
* Update to pytest 3.2.5

* Get pytest to pass Python 2.6 compatibility checks
2018-01-10 17:41:50 -06:00
Adam J. Stewart
10ee7d6d81
Add suggestion to Contribution Guide to activate flake8 (#6886) 2018-01-10 13:02:33 -06:00
jkelling
da01c8a541 package libharu: Add build deps (#6883)
... libtool,autoconf,automake
2018-01-10 12:28:32 -06:00
stefanosoffia
8a7525064d Updated i3 dependencies. (#6885) 2018-01-10 11:02:07 -06:00
Massimiliano Culpo
596d463714 Travis: use --concurrency=multiprocessing only on build tests (#6872)
On a local workstation, it seems that tracking multiple processes during
coverage may result in malformed coverage reports for unit tests and not
for build tests.

Given that multiple processes make a difference in coverage mainly for
build tests, try to disable the tracking for unit tests to see if we get
more stable coverage results.
2018-01-10 10:14:17 -06:00
Adam J. Stewart
d17a10c6ac
Update to the latest version of jinja2 (#6790) 2018-01-10 10:06:04 -06:00
Adam J. Stewart
4fdf08e51c
Update to py 1.4.34 (#6789)
* Update to the latest version of py

* Revert back to py 1.4.34
2018-01-10 10:05:39 -06:00
Adam J. Stewart
e4c0ed8540
Add unit tests for spack versions command (#6774)
* Add unit tests for spack versions command

* Fix bug in web spidering for Python 2.6
2018-01-10 10:04:47 -06:00
Adam J. Stewart
2f0dd02c10
Update to the latest version of six (#6787) 2018-01-10 10:04:07 -06:00
Adam J. Stewart
cab34d7d3b
Fix bug in placeholder spack cd command and add unit tests (#6776) 2018-01-10 10:03:45 -06:00
Adam J. Stewart
db42d080f7
Geant4: fix qt dependency (#6828) 2018-01-10 09:48:15 -06:00
Adam J. Stewart
ab4e20a49c
Older versions of libiconv don't work with newer versions of GCC (#6829) 2018-01-10 09:47:33 -06:00
Levi Baber
c1117f0593 opa-psm2: new package (#6874)
* opa-psm2: new package

* opa-psm2: installs now. think the module file needs work

* opa-psm2: module file seems good now

* opa-psm2: remove fixme

* opa-psm2: flake8 fixes

* opa-psm2: removing unnecessary make in install phase
2018-01-10 09:45:34 -06:00
健美猫
b733ce1e5f bcftools is a AutotoolsPackage. (#6881) 2018-01-10 09:45:05 -06:00
Geoffrey Oxberry
77a29f09f9 emacs: on darwin, do not build Cocoa app (#6882)
Building emacs on darwin throws an error when trying to build an Emacs
app in the nextstep/Emacs.app path of the build tree. For now, disable
building this app.

It's possible to enable building the app also; Homebrew offers options
to this effect, and also adds Mac-specific options for starting the
emacs daemon. However, for the sake of simplicity and getting a
workable up-to-date emacs installation on my machine as quickly as
possible, this commit focuses on a minimal viable modification.
2018-01-10 09:44:35 -06:00
健美猫
ac5b5724c6 Add a new package: unblur. (#6867)
* Add a new package: unblur.

* Add a new package: unblur.

* Add a new package: unblur.

* Add a new package: unblur.

Conflicts:
	var/spack/repos/builtin/packages/unblur/package.py

* Add a new package: unblur.
2018-01-10 09:35:00 -06:00
Adam J. Stewart
ba84630caf Add unit tests for spack arch command (#6775) 2018-01-10 13:53:55 +01:00