Commit graph

10663 commits

Author SHA1 Message Date
noguchi-k
0ca5ad237a
denovogear: fixed comparison error (#15638) 2020-03-27 11:29:30 -05:00
iarspider
953bd04cb3
Bison: add version 3.3.2 (#15707) 2020-03-27 11:21:42 -05:00
iarspider
0f8148b258
py-attrs: add version 19.3.0 (#15709) 2020-03-27 11:16:40 -05:00
Dr. Christian Tacke
16f104aafe
intel-tbb: new download url, fix sha256 (#15675)
intel moved the repository around.
github changes the prefix inside the tar according to the
repository name.

So all sha256 have changed!

I verified that the tar contents for 2019.4 did not change
except for the prefix.
2020-03-27 10:59:05 -05:00
Amjad Kotobi
6e82761d4e
New package Anaconda2 (#15676) 2020-03-27 10:58:50 -05:00
Andrew W Elble
108a0c99f1
TensorFlow: Make horovod compilation work (#15692)
* TensorFlow: Clean up/simplify the installation, make sure the headers are
installed so that horovod can find them successfully. Fix the 2.0.* builds.

* Backport of 837c8b6b upstream
"Remove contrib cloud bigtable and storage ops/kernels."
Allows 2.0.* releases to build with '--config=nogcp'

* comment regarding tensorflow issue #31187

Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-03-27 10:51:04 -05:00
Toyohisa Kameyama
7df7b65cec
ppOpen-AT: New package (#15649)
* ppOpen-AT: New package

* use install instead of install-after.

* use install_tree.

* forget remove mkdir.
2020-03-27 08:16:48 -05:00
Brian Homerding
420b5dd4b9
MpiP: adding variant to build shared libraries (#10410) 2020-03-27 12:07:57 +01:00
darmac
e1238bae90
dpdk: added new package at v20.02 (#15635) 2020-03-27 10:21:16 +01:00
darmac
6a33c269bd
sshpass: added new package (#15704) 2020-03-27 08:44:41 +01:00
iarspider
97c3addad3
cppgsl: added v2.1.0 (#15696)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 08:42:50 +01:00
Fabian Brandt
dcc4aabce1
New package libtlx (#15650)
* New package libtlx

* Replaced dash characters with ascii dash
2020-03-26 22:55:27 -05:00
Michael Kuhn
5f06e50902
meson: Add 0.53.2 and fix setuptools dependency (#15674)
py-setuptools is actually required for running meson.
2020-03-26 22:50:20 -05:00
Hector
0ebed5a618
fix gdb installation (#15679)
* fix gdb installation

* add reference url
2020-03-26 22:45:47 -05:00
Sinan
2828815a49
add new versions (#15688)
Co-authored-by: Sinan81 <Sinan81@github>
2020-03-26 22:41:57 -05:00
noguchi-k
5cb4db8570
gtkorvo-dill: fix argument type of clear_cache (#15689) 2020-03-26 22:41:25 -05:00
Toyohisa Kameyama
8293660217
ppOpen-MATH/MP: New package. (#15690)
* ppOpen-MATH/MP: New package.

* Fix quote.
2020-03-26 22:40:22 -05:00
Seth R. Johnson
e989c05cd0
Add include-what-you-use (#15691) 2020-03-26 22:38:56 -05:00
iarspider
209c7e3ddd
xrootd: new version (4.11.2) (#15694) 2020-03-26 22:37:56 -05:00
iarspider
bbc76c3551
fmt: new version (6.1.2) (#15695) 2020-03-26 22:37:33 -05:00
iarspider
640df9c20b
range-v3: add new version (0.10.0) (#15697) 2020-03-26 22:36:24 -05:00
Roman Briskine
ef7837410e
Fix non-root installations; update homepage (#15701) 2020-03-26 22:32:19 -05:00
Jennifer Herting
7b4354b4c3
genometools: added v1.6.1 (#15657) 2020-03-26 15:01:24 +01:00
Andrew Gaspar
a0c8686105
catch2: added versions up to v2.11.3 (#15680) 2020-03-26 12:46:39 +01:00
Toyohisa Kameyama
9e51ba80c7
ppOpen-Math/VIS: added new package (#15665) 2020-03-26 08:37:25 +01:00
darmac
9f5873324e
kmod: added package at v27 (#15633) 2020-03-26 07:50:28 +01:00
gauthier12
851fb173c8
med package: add version 4.0.0 (#15652) 2020-03-25 19:10:31 -07:00
iarspider
a2801a8deb
OpenJDK: add version 8u222 (#15677) 2020-03-25 19:00:39 -07:00
Carson Woods
9f256ed953
darshan-util and darshan-runtime: add version 3.1.8 (#15681) 2020-03-25 19:00:15 -07:00
Dan Bonachea
e042bd9d89
UPC++ 2020.3.0 update (#15623)
## Summary

This PR updates and improves the Spack package for [UPC++](https://upcxx.lbl.gov).
I'm an LBL employee and developer on the UPC++ team, as well as the maintainer of this Spack package.

### Key Improvements:
* Adding new 2020.3.0 release and support for use of develop/master branches
    - Our build infrastructure underwent a major change in this release, switching from a hand-rolled Python2 script to a bash-based autoconf work-alike. 
    - The new build system is NOT using autotools (nor does it support some of the more esoteric autoconf options), but the user interface for common builds is similar.
* Add explicit support for an MPI optional dependency
    - New `mpi` variant enables use of the MPI-based spawner (most relevant on loosely coupled clusters), and the (unofficial) mpi-conduit backend
    - This variant is OFF by default, since UPC++ works fine without MPI on many systems, increasing the likelihood first-time Spack users get a working build without needing to correctly setup MPI
* Add support for post-install testing using the test support deployed in the new build infrastructure
* Fix or workaround a few bugs observed during testing 

### Status

The new package has been validated with a variety of specs across over seven different systems, including: NERSC cori, ALCF Theta, OLCF Summit, an in-house Linux cluster, and macOS laptops (Mojave and Catalina).
2020-03-25 16:05:13 -07:00
Axel Huebl
9c0b197460
WarpX: MPI, Backends, Ascent (#15647)
Expose serial/parallel build (MPI), CUDA/OpenMP backends, Clang, and
Ascent bindings.

Interestingly, `warpx +ascent` currently leads to an infinite loop in
the Spack concretizer.
2020-03-25 14:54:13 -07:00
Axel Huebl
3aa225cd5c
openPMD-api: added v0.11.1 (#15659)
Add the latest release with HDF5-1.12 compatibility.
2020-03-25 11:57:00 +01:00
xfzhao
f1aec94719
mothur: specify version of vsearch (#15661) 2020-03-25 11:50:30 +01:00
Ben Morgan
2480217387
gitconddb: new package at v0.1.1 (#15651)
Git-based conditions database for HEP and other experiments.

Use latest release version and current master to support Linux and
macOS. Add core known dependencies and conflicts related to C++17
support.

cxxstd variant added to help transitive dependencies, and for future
support for newer standards in future.
2020-03-25 11:28:06 +01:00
Hadrien G
b8db87e1dc
ACTS: added v0.19 (#15671) 2020-03-25 10:49:53 +01:00
Sinan
24ca071652
pocl: add versions up to v1.4.0 (#15672)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-25 10:49:09 +01:00
Jeffrey Salmond
7e1e98cf8f
julia: added v1.4.0 (#15673) 2020-03-25 10:46:04 +01:00
darmac
16eb86acf2
libwebp: fix sha256 checksum (#15639) 2020-03-25 00:07:34 -07:00
Stephanie Brink
4e6c07529d
xz: add version 5.2.5 (#15656) 2020-03-24 23:05:26 -07:00
Matthias Diener
d099143999 charmpp: add version 6.10.1+cleanups
- change URL to http as our server only supports TLSv1.0, which
not all HTTPS clients accept anymore
- change name of development branch to 'master'
2020-03-24 23:04:41 -07:00
Carson Woods
25e50a9943
pmix: add version 2.2.3 (#15668) 2020-03-24 23:01:24 -07:00
Carson Woods
cfa8e69835
singularity: add version 3.5.3 (#15669) 2020-03-24 23:01:00 -07:00
eugeneswalker
862e13183d
workaround for otf2's erroneous python2 configure requirement (#15653) 2020-03-24 14:11:38 -07:00
Amjad Kotobi
3b7c79b225
r-remotes: added v2.1.1 (#15627) 2020-03-24 10:10:33 +01:00
Tomoki, Karatsu
dfe4e980ea
py-onnx: remove_dllexport_decl. (#15648) 2020-03-24 09:56:39 +01:00
Michael Kuhn
7e0ec0ec09 automake: Add 1.16.2 2020-03-23 18:52:02 -07:00
Andreas Baumbach
7b486fd84d py-ics: add version 0.7 2020-03-23 17:04:04 -07:00
Carson Woods
6a18bfbae8
CMake: add version 3.9.2 (#15644) 2020-03-23 17:03:25 -07:00
Carson Woods
e1f593b6c6
lmod: add version 7.8.1 (#15643) 2020-03-23 17:02:46 -07:00
Piotr Luszczek
d3c1a4c94b
xsdk-examples: add new package at version 0.1.0 (#15621)
* xsdk-examples: add new package at version 0.1.0
2020-03-23 00:10:15 -05:00
Adam J. Stewart
62787a7a3b
NCCL: add 1.2.2 (#15628) 2020-03-22 15:32:53 -05:00
Axel Huebl
a3e3413855
WarpX: Update ES and openPMD (#15611)
Update WarpX for recent developments:
- add openPMD I/O (default: ON)
- remove electro-static solver option (now a runtime option)
- enable tiny profiler by default
- depend on new CXX std support in make scripts for C++14
- WarpX only supports 2D and 3D in cartesian dims
2020-03-21 15:36:15 -07:00
Ben Morgan
bb4e9a7b32
davix: add cxxstd variant (#15593)
* davix: add cxxstd variant

Davix is written in C++, so add this variant to allow dependents to specify
this so a consistent ABI is used.

* davix: fix flake8 errors
2020-03-21 13:27:35 -05:00
Adam J. Stewart
983f9d3419
bash: add patches up to 5.0.16 (#15615) 2020-03-21 12:42:54 -05:00
Adam J. Stewart
7bde39d883
Fix bug in py-dgl installation, add unit tests (#15617) 2020-03-21 11:52:01 -05:00
darmac
4b771bc521
add new package: nfs-ganesha (#15580)
* add new pacakge: nfs-ganesha

* refine package.py

* update bison & flex as build depends
2020-03-21 10:42:08 -05:00
Adam J. Stewart
64737e0632
py-torchtext: add new package (#15604) 2020-03-20 16:01:18 -05:00
Matthias Maiterth
42db143587
freeipmi: Initial commit (#15576)
* freeipmi: Initial commit

Added freeipmi package. Configure and build work fine, install only as root,
thus added warning and added reference to issue #4432 .

* freeipmi: fixed change requests
2020-03-20 14:51:51 -05:00
Benjamin Fovet
74ba247839
Add gmsh v4.5.4 with new options (#15591)
* Add gmsh v4.5.4 with new options

This adds OpenCASCADE as an alternative to the oce package.
A new variant 'privateapi' is added to enable the gmsh private API.

* Make oce conflict with opencascade in gmsh
2020-03-20 14:51:30 -05:00
Benjamin Fovet
d3fafaa868
Add Ceres Solver v1.14.0 with new variants (#15597)
* Add Ceres Solver version 1.14.0

* Add variants for Ceres Solver
2020-03-20 14:51:01 -05:00
Carson Woods
c45644afaa
Add 33.2.1 version with checksum to lua-luaposix (#15600) 2020-03-20 14:50:07 -05:00
Adam J. Stewart
70577e4fd7
py-sentencepiece: add new package (#15601) 2020-03-20 14:42:54 -05:00
Dan Lipsa
9c45c44738
Add version 5.8 and fix sqlite+column_metadata mismatch. (#15450) 2020-03-20 15:26:41 -04:00
eugeneswalker
2f8ff722a9
tau: add dependency on hwloc (#15589) 2020-03-20 11:44:03 -07:00
Adam J. Stewart
3f4d300c84
sentencepiece: add new package (#15596) 2020-03-20 13:39:39 -05:00
Adam J. Stewart
6f3983b1c7
py-dgl: add new package (#15594) 2020-03-20 12:42:24 -05:00
Benjamin Fovet
e66a7530a1
Add NLopt version 2.6.1 (#15595) 2020-03-20 12:42:01 -05:00
Kevin Manalo
3b70c932aa
papi: add version 6.0.0 (#15590) 2020-03-20 10:08:54 -07:00
Dr. Christian Tacke
cf45d38d24
root: Add version 6.20.{00,02} (#15487)
* Add version 6.20.{00,02}, don't yet mark it preferred
* It needs zstd
* It needs numpy (at least for 6.20.00:6.20.03)
* Reorder python dependencies a bit

* Add mlp variant, default False
  Older versions always include mlp, so no conflicts there.
* Disable tmva, because it needs mlp
* tmva needs mlp, so add conflict
2020-03-20 16:55:48 +00:00
Matthieu Dorier
d14a6e6bc7
Added two new versions of spdlog (#15586) 2020-03-20 09:19:06 -05:00
darmac
5f63fc5316
add new package: glusterfs (#15565)
* add new package: glusterfs

* fix list_depth for url

* remove list_depth

* add list_url for glusterfs
2020-03-20 09:18:24 -05:00
darmac
6cccce4932
add new package lksctp-tools (#15564)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-20 10:11:12 +01:00
Adam J. Stewart
03a88a2d3f
py-decorator: added v4.4.2 (#15581) 2020-03-20 10:10:19 +01:00
Adam J. Stewart
b4f1f42e4f
py-networkx: add 2.4 (#15582) 2020-03-20 10:09:48 +01:00
Adam J. Stewart
9a71a76461
py-tfdlpack: add new package (#15583) 2020-03-20 10:08:54 +01:00
Hadrien G
fdf363eaad
acts-core: added v0.18, updated boost dependency (#15584) 2020-03-20 10:06:45 +01:00
Andreas Baumbach
3f83d4d8f5
htop: add missing python build dependency (#15585) 2020-03-20 10:05:30 +01:00
Kevin Huck
625bf187d2
perfstubs: added new package (#15547) 2020-03-20 09:41:36 +01:00
Andrew Gaspar
e2cf6f5b1b
Improvements to Rust's Installation (#15395)
* Add sources and resources for each version of Rust

* install bootstrapping compiler into stage

* Add libgit2

* Install bootstrapping compiler correctly

* implement full rust bootstrap

* Remove support for Rust pre-1.14

Also add lots of comments

* Support only Rust 1.17 and newer

* Remove < 1.23 versions of Rust

* Change the layout of rust_releases for maintainability

* Remove LLVM variant

* Address flake8 issues

* Make libgit2 curl variant default False, conflict 0.28 and newer

* Remove binutils dependency

* Add ARM64 while we're at it

* flake8

* use the 'python' routine rather than relying on the correct python to be picked up
2020-03-19 22:57:41 -05:00
darmac
a89c5b36f0
add new package: bcache (#15563)
* add new package: bcache

* add depends: gettext for libintl
2020-03-19 22:57:04 -05:00
darmac
ce7cd7a5ab
add new package: libiscsi (#15579) 2020-03-19 22:35:59 -05:00
Nithin Senthil Kumar
b522296a5a
Update MVAPICH2 package for 2.3.3 release (#15578)
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-03-19 20:59:00 -05:00
Teodor Nikolov
a61c53a5c9
cosma: added package at v2.0.2 (#15497)
* [new package] COSMA

* Use virtual dependencies
2020-03-19 14:50:12 -05:00
Jordan Ogas
f9e58a52da
add charliecloud/0.14; remove umoci/skopeo; remove builder variant (#15573)
* add charliecloud/0.14; remove umoci/skopeo; remove builder variant

* fix typo

* add maintainer; add explicit config doc options; add py-requests as run dependency

* add autoconf build dependencies
2020-03-19 14:49:11 -05:00
Kai Germaschewski
b583b0e112
petsc fix hdf5 (#15572)
* petsc: add checksum for 3.12.4

* petsc: constrain hdf5 to <= 1.10.x

Current petsc will error when being build with hdf5 1.12, so this ensures that
a compatible hdf5 will be used. Fix suggested by @balay.
2020-03-19 11:42:19 -05:00
darmac
ef68d1f5df
add new package: ntirpc (#15561) 2020-03-19 11:22:03 -05:00
darmac
8142b2dc6b
add new package: yarn (#15562) 2020-03-19 11:21:37 -05:00
Yannik Stradmann
bfa72ed926
Add package: py-deprecated (#15571)
https://github.com/tantale/deprecated
2020-03-19 11:15:19 -05:00
Michael Kuhn
0b1b8c3936
openssl: added v1.1.1e and v1.0.2u (#15568) 2020-03-19 15:34:18 +01:00
darmac
363cf9f9b1
update attr version to 2.4.48 (#15535)
* update attr version to 2.4.48

* attr: remove redundant make() in install()
2020-03-19 09:24:35 -05:00
Toyohisa Kameyama
a3cb1b8e7e
amdblis + blis: fix spack info and libs query (#15566) 2020-03-19 12:28:18 +01:00
Adam J. Stewart
14e2c42bce
py-matplotlib: add 3.2.1 (#15560) 2020-03-18 22:58:39 -05:00
Mark W. Krentel
69231c7d18
hpctoolkit: restore binutils 2.34 for master (#15556)
Hpctoolkit master was recently updated to test for and allow old
binutils <= 2.33.1 and/or new binutils 2.34.  Older hpctoolkit up to
2030.03.01 will forever require :2.33.1.

Adjust the libunwind dependency for safety with the current
concretizer.
2020-03-18 22:19:25 -05:00
Axel Huebl
7bcc41018f
Split: Fabtest/libfabric (#15557)
Fabtests provides runtime analysis tools and examples of libfabric.

As with other projects that are tightly version-bound, e.g.
`py-adios` and `adios`, the fact that releases stem from the same
repo does not imply they should be the same package.

Remove resources, which complicate the libfabric build, and update
the fabtests package accordingly.
2020-03-18 18:04:01 -07:00
Kelly (KT) Thompson
1bcc80ec5d
Trilinos: Add more variants (~netcdf ~matio ~glm) (#15483)
* Trilinos: Add more variants

+ Provide three new variants to allow building trilinos without netcdf, matio,
  or glm.
+ No change to defaults.

* Fix style issue.
2020-03-18 17:05:51 -05:00
Neil Flood
432bdeee85
Tuiview movetogithub (#15498)
* py-tuiview: Source has moved to github

* py-tuiview: Explicitly require +python on gdal dependency

* py-tuiview: Versions up to 1.1.99 are qt4 only

* py-tuiview: Add version 1.2.6, which is qt5 only

* Explicit version range on gdal dependency
2020-03-18 17:05:05 -05:00
Satish Balay
6a51d540f1
petsc@3.7 fix dependency of superlu-dist@5.1.3 (#15551) 2020-03-18 17:04:38 -05:00
Adam J. Stewart
51f8744ab7
py-horovod: set appropriate build env vars (#15548)
* py-horovod: set appropriate build env vars

* mxnet: add maintainer

* py-horovod: fetch git submodules

* py-torch: fix CUDA conflicts
2020-03-18 17:01:20 -05:00
ktsai7
77b11433b3
modified spackage for flecsi and cinch (#15555) 2020-03-18 15:46:29 -06:00
gauthier12
ff29599578
adol-c:updating sources location (#15532)
* adol-c:updating sources location

* Update var/spack/repos/builtin/packages/adol-c/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-18 15:13:57 -05:00