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662 commits

Author SHA1 Message Date
alalazo
81a389151f cmake : added variant that activates the build of the ncurses gui 2016-01-11 13:00:23 +01:00
alalazo
625570e730 added package : cgal 2016-01-11 12:50:47 +01:00
Erik Schnetter
23c5a1e6e9 Build Lua on Darwin 2016-01-10 19:37:44 -05:00
Erik Schnetter
9f2dbc9df4 Update Lua to 5.3.2 2016-01-10 19:34:02 -05:00
Erik Schnetter
992b9c46dd Resolve readline/ncurses dependency when building Lua 2016-01-10 13:44:53 -08:00
Erik Schnetter
79a1de2f17 Add a patch to prevent Julia running out of virtual memory 2016-01-09 10:47:31 -05:00
Erik Schnetter
b18732173a Require Python to build Julia 2016-01-08 23:21:54 -05:00
Erik Schnetter
d9f1a55c90 Ensure than OpenBLAS provides a file liblapack.a 
OpenBLAS implements the virtual package "lapack", and its consumers apparently expect a "liblapack.a".
 2016-01-08 22:48:37 -05:00
Erik Schnetter
d5ff7fda6e Ensure the APPS environment variable is not set when building OpenSSL 2016-01-08 22:41:18 -05:00
Erik Schnetter
3d7e7c53c5 Require libunwind 2016-01-08 22:33:55 -05:00
Erik Schnetter
0c9acb0f62 Update gperftools to version 2.4 2016-01-08 22:32:00 -05:00
Erik Schnetter
2ac2985cf2 Require Python for PETSc 
PETSc requires Python for building.

I have a case where an HPC system has a very old default Python version, too old for Spack. So I load a module for Python, which makes Spack work. This module relies on LD_LIBRARY_PATH.

When building PETSc, Spack unsets LD_LIBRARY_PATH, breaking the Python that PETSc finds.

Explicitly requiring Python for PETSc makes building PETSc work.
 2016-01-08 22:24:42 -05:00
Erik Schnetter
e628896c2b parmetis requires cmake @2.8: 2016-01-08 22:12:19 -05:00
Erik Schnetter
da8fd5b30a Require cmake @2.8: for metis 2016-01-08 21:56:08 -05:00
Erik Schnetter
04f908a957 Require cmake @2.8: 2016-01-08 21:41:35 -05:00
Erik Schnetter
8da1dd2b45 Require cmake 2016-01-08 21:32:17 -05:00
Erik Schnetter
6214148d35 Use .tar.gz instead of .tar.xz for backward compatibility 2016-01-08 17:16:30 -05:00
Gregory L. Lee
7ad3e2b56b new python packages 2016-01-08 11:09:11 -08:00
Gregory L. Lee
175f20a9dc new and updated python packages 2016-01-07 11:12:47 -08:00
Erik Schnetter
1646bec1a4 Make PETSc build with OpenMPI 2016-01-07 13:54:47 -05:00
Todd Gamblin
dd04b6a873 Merge pull request #278 from eschnett/eschnett/hdf5-variants 
Enable several variants for HDF5
 2016-01-06 23:50:40 -08:00
Todd Gamblin
a651572cfd Merge pull request #307 from eschnett/eschnett/atop 
New package atop
 2016-01-06 23:40:03 -08:00
Ben Boeckel
e790146627 paraview: add some extra arguments on OS X 
X shouldn't be used on OS X and spack expects a Unix-style install, not
a .app bundle.
 2016-01-06 12:05:05 -05:00
Erik Schnetter
fd7c1fe584 Avoid using tabs 2016-01-06 10:10:15 -05:00
Todd Gamblin
84c7e457e9 Merge pull request #302 from eschnett/eschnett/correct-boost 
Correct `join_path` in package boost
 2016-01-06 04:34:44 -08:00
Todd Gamblin
a65fa54514 Merge pull request #270 from eschnett/eschnett/openssl-darwin 
Make OpenSSL build on Darwin
 2016-01-06 04:07:16 -08:00
alalazo
7670dc7efc glpk : added support for gmp 2016-01-06 10:05:48 +01:00
alalazo
24ba60168d added package : glpk 2016-01-06 09:49:10 +01:00
Erik Schnetter
cfe54b201d New package atop 2016-01-05 20:09:22 -05:00
Erik Schnetter
60d8413940 Support mbedtls, an alternative SSL library 2016-01-05 19:21:57 -05:00
Mike Nolta
2b801e2086 new package: py-astropy 2016-01-05 15:41:18 -05:00
Erik Schnetter
c18dfa058a Add details to comment 2016-01-05 14:09:54 -05:00
Erik Schnetter
12632f16b8 Combine with other OpenSSL Darwin patch 
Set KERNEL_BITS.
Don't use Darwin-specific configure script.
 2016-01-05 13:17:17 -05:00
Erik Schnetter
25934200de Merge branch 'develop' into eschnett/openssl-darwin 2016-01-05 13:09:57 -05:00
Erik Schnetter
24ced90913 Correct join_path in package boost 2016-01-05 09:40:30 -05:00
Todd Gamblin
20e8b67eb6 Merge pull request #297 from eschnett/eschnett/boost-darwin 
Support Darwin for Boost
 2016-01-05 00:42:31 -08:00
Erik Schnetter
96e5905bce Build multiple FFTW variants simultaneously 
FFTW can build only one floating point precision (float, double, long double, quad) at once, but they can all be installed simultaneously as the libraries have different names. It is common packages to decide only at run time which precision FFTW they need, and thus FFTW should offer all precisions at once.
 2016-01-04 12:14:42 -05:00
Tom Scogland
133fda11f2 Merge remote branch 'origin/llvm-rework' into llvm-rework 2016-01-03 17:22:57 -08:00
Tom Scogland
884f317d50 tweak gold support, added to gcc 
The gold linker support and gold plugin variants now use the same name.
Trying to apply use-flag-style discipline here despite the fact gold has
other implications for clang, this way globally enabling gold will have
a more consistent effect if that becomes possible.  The gold support in
gcc could use more testing to ensure it works consistently, but as long
as a binutils including gold is used the gcc configure tends to pick it
up, and it seems to work with 5.3.0 at least.
 2016-01-03 17:22:13 -08:00
Tom Scogland
31803d10aa bringing back configuration and build stages 2016-01-02 11:59:33 -08:00
Tom Scogland
356836ccbb removed extraneous comment lines 2016-01-01 22:30:02 -08:00
Erik Schnetter
03537a6be4 Support Darwin for Boost 
Ensure that builds on Darwin use the "darwin" toolset.
Also update Boost to 1.60.0.
 2016-01-01 17:38:42 -05:00
Erik Schnetter
f5a49280c3 Enable C++ and Fortran languages by default 2016-01-01 17:26:49 -05:00
Todd Gamblin
3c64c18bfc Merge pull request #274 from eschnett/eschnett/julia 
Add package for Julia
 2015-12-31 15:46:52 -08:00
Todd Gamblin
48ebb25c25 Merge pull request #271 from eschnett/eschnett/pcre2 
New package PCRE2
 2015-12-31 15:40:03 -08:00
Todd Gamblin
7062b216b8 Merge pull request #258 from epfl-scitas/packages/scalasca 
Packages/scalasca
 2015-12-31 15:27:39 -08:00
Tom Scogland
48f19b5fde add the gold linker to binutils 2015-12-30 16:59:39 -08:00
Tom Scogland
5d89fb8dfa ensure that clang-query gets installed 2015-12-30 16:59:39 -08:00
Tom Scogland
4ae98f8b21 significant llvm update 
This update significantly reworks the llvm and clang packages.  The llvm
package now includes variants allowing it to build and install any and
all of:

* clang
* lldb
* llvm's libunwind (why, WHY did they name it this?!?)
* polly (including building it directly into the clang tools, 3.7.0 only)
* clang extra tools
* compiler-rt (sanitizers)
* clang lto (the gold linker plugin that allows same to work)
* libcxx/libcxxabi
* libopenmp, also setting the default openmp runtime to same, when
  parameters happen this shoudl be an option of libomp or libgomp

Ideally, this should have rpath setup like the gcc package does, but
clang's driver has no support for specs as such, and no clearly
equivalent mechanism either.  If anyone has ideas on this, they would be
welcome.

One significant note related to gcc though, if you test this on LLNL
systems, or anywhere that has multiple GCCs straddling the dwarf2
boundary and sharing a libstdc++, build a gcc with spack and use that to
build clang.  If you use a gcc4.8+  to build this with an older
libstdc++ it will fail on missing unwind symbols because of the
discrepancy.

Resource handling has been changed slightly to move the unpacked archive
into the target rather than use symlinks, because symlinks break certain
kinds of relative paths, and orders resource staging such that nested
resources are unpacked after outer ones.
 2015-12-30 16:59:39 -08:00
Tom Scogland
01f811d546 legacy mysql bindings for python 2015-12-30 11:18:13 -08:00
Tom Scogland
31f674da3c python libraries, libedit, and ninja 
A pile of libraries and tools, libedit is actually important as a
replacement of readline for non-GPL projects.  Also ninja may be
worthwhile for some of the larger CMake projects, like llvm/clang.
 2015-12-30 11:13:09 -08:00
Todd Gamblin
3e3667f254 Revert "removing check as it can cause failures in zsh" 
This reverts commit 496e485691.

Undo overly large set of changes -- LLVM wasn't ready.  Tom can
recommit just the zsh stuff.
 2015-12-30 10:20:27 -08:00
Tom Scogland
496e485691 removing check as it can cause failures in zsh 2015-12-30 10:13:46 -08:00
Erik Schnetter
be12720eb7 Use filter_file instead of calling perl 2015-12-25 14:02:56 -05:00
Erik Schnetter
01f7e768f6 Enable several variants for HDF5 
+cxx, +fortran: Enable support for the respective languages
+threadsafe: Enable multi-threading
 2015-12-23 22:49:42 -05:00
Erik Schnetter
51f546fe92 Add comments to package file 2015-12-23 18:21:41 -05:00
Erik Schnetter
309877088d Build Julia 2015-12-23 18:21:40 -05:00
Erik Schnetter
a58dd8f6ab Remove leftover debug statement 2015-12-23 18:19:26 -05:00
alalazo
21dae4577a R : updated package 2015-12-23 10:20:13 +01:00
Erik Schnetter
60ec79eac3 New package PCRE2 
This is a major update of the package PCRE. It seems both PCRE and PCRE2 can be installed at the same time; their APIs are different.
 2015-12-22 18:53:43 -05:00
Erik Schnetter
a540a68561 Make OpenSSL build on Darwin 2015-12-22 18:51:49 -05:00
Todd Gamblin
d1d23ec5e6 Merge pull request #257 from eschnett/eschnett/hwloc-1.11.2 
Update hwloc; don't require libpciaccess on OS X
 2015-12-22 15:18:39 -08:00
Erik Schnetter
552d8ca5f0 Update rsync to 3.1.2 2015-12-22 16:40:09 -05:00
Erik Schnetter
6831ee6f0a Skip installing libpciaccess on Darwin 2015-12-22 16:24:05 -05:00
Erik Schnetter
6dc1fc03c1 Update hwloc; don't require libpciaccess on OS X 
- hwloc 1.11.2 is available.
- libpciaccess is not supported on OS X; don't require it there.
 2015-12-22 15:50:46 -05:00
Todd Gamblin
100ada0ed6 Merge pull request #266 from LLNL/bugfix/python3-setuptools-conflict 
fix conflict with setuptools and cached pyc files
 2015-12-22 09:19:57 -08:00
Gregory L. Lee
41fd380d1b fixed site pyc regular expression 2015-12-22 09:15:47 -08:00
Todd Gamblin
b1d40efd99 Merge pull request #261 from LLNL/features/prefer-versions-in-packages 
Add ability to prefer particular versions in packages.
 2015-12-22 08:25:52 -08:00
Gregory L. Lee
3db1c1761e only ignore cached site.py file 2015-12-22 08:03:17 -08:00
Todd Gamblin
5bcec9289e Merge pull request #263 from nolta/hdf5-mpi 
fix non-mpi hdf5 package build
 2015-12-22 07:57:11 -08:00
Gregory L. Lee
d85a46380c fix conflict with setuptools and cached pyc files 2015-12-22 06:50:18 -08:00
alalazo
fc43f3c730 valgrind : added package 2015-12-22 10:11:18 +01:00
Mike Nolta
bfc72c04fb fix non-mpi hdf5 package build 
Fixes a couple of issues in c5b7eba457.
 2015-12-21 18:59:01 -05:00
Todd Gamblin
fe0fdf60b4 Add ability to prefer particular versions in packages. 
- Adding `preferred=True` to a version directive will change its sort
  order in concretization.

- This provides us a rudimentary ability to keep the Spack stack
  stable as new versions are added.

- Having multiple stacks will come next, but this at least allows us
  to specify default versions of things instead of always taking the
  newest.
 2015-12-21 15:35:47 -08:00
Gregory L. Lee
c3aaf005e2 new python versions 2015-12-21 15:14:59 -08:00
Gregory L. Lee
f9326053b9 remove numpy compiler patch 2015-12-21 13:56:19 -08:00
Todd Gamblin
73ea15db8e Merge pull request #208 from epfl-scitas/features/resource_directive 
resource directive : implementation + clang / llvm use case
 2015-12-21 10:34:16 -08:00
Todd Gamblin
d5e9279c1d Merge pull request #215 from sjtbham/develop 
fix build to work against depends for modules created by setup.py and…
 2015-12-21 09:24:16 -08:00
alalazo
a411c497ab scalasca + dependencies : simplified build after #255 2015-12-21 16:10:55 +01:00
alalazo
0a191d6b09 scalasca : updated package build (depends on scorep, does not build twice). 2015-12-21 15:02:48 +01:00
Todd Gamblin
bb329d8a5c Merge pull request #231 from epfl-scitas/packages/scotch 
scotch: adding dependencies + variants for mpi, shared, compression and esmumps
 2015-12-20 14:29:19 -08:00
Todd Gamblin
d6edaa0970 Merge pull request #251 from epfl-scitas/packages/tau 
Improved build of tau and related dependencies
 2015-12-20 14:26:40 -08:00
alalazo
14c9c61275 tau : scorep is now a variant 2015-12-20 17:38:35 +01:00
Nicolas Richart
27d52badb1 removing completely the write_make_inc function 2015-12-20 13:38:22 +01:00
Nicolas Richart
614c4d1876 moving write_make_inc into a patch function 2015-12-20 13:27:43 +01:00
Todd Gamblin
37db5928b7 Merge pull request #109 from justintoo/add-package-spot 
(Package) Add Spot C++ library (v1.99.3)
 2015-12-19 21:06:22 -08:00
Todd Gamblin
22a4eb6b27 Merge pull request #226 from epfl-scitas/packages/mpiches 
mpich, mvapich2: changes the filter for the wrappers mpi{cc, cxx, f77, fc}
 2015-12-19 21:04:08 -08:00
Todd Gamblin
1b086c928c Merge pull request #227 from trws/fetch-deps 
fetch: add options to fetch missing or all deps
 2015-12-19 21:02:42 -08:00
Todd Gamblin
3d3bea618e Fix empty format strings in some packages. 2015-12-19 20:08:14 -08:00
Mike Nolta
e403576cf9 new package: cfitsio 2015-12-19 18:38:23 -05:00
Gregory L. Lee
8dd1f3ffa5 added mrnet 5.0.1 2015-12-19 07:43:34 -08:00
alalazo
f3837dd686 tau : removed direct otf2 support 2015-12-18 16:15:30 +01:00
alalazo
dfbf1b2205 Merge branch 'develop' of https://github.com/alalazo/spack into packages/tau 2015-12-18 13:00:43 +01:00
alalazo
8dc32aeedb Improved tau build and added optional dependencies 2015-12-18 12:58:29 +01:00
Todd Gamblin
3198522a7f Merge pull request #236 from nolta/cmake-enable-ssl 
cmake: enable ssl, for https downloads
 2015-12-17 23:03:31 -08:00
David Beckingsale
f91e1ae83f Added Lmod package 2015-12-17 15:26:47 -08:00
Todd Gamblin
4d982f5aca Merge pull request #86 from jgalarowicz/develop 
Add support for Krell Institute related products.
 2015-12-17 12:35:30 -08:00
Jim Galarowicz
c02cbaecd8 Change back the previous boost change and change the mrnet variant name to lwthreads. 2015-12-17 07:41:49 -08:00
Todd Gamblin
85c02dbe7b Merge pull request #167 from mathstuf/hdf5-fix-mpi-dependency 
Hdf5 fix mpi dependency
 2015-12-16 12:03:22 -08:00
Todd Gamblin
9ac4c730fb Merge pull request #241 from epfl-scitas/packages/gnuplot 
gnuplot : added package
 2015-12-16 11:37:26 -08:00