Commit graph

16917 commits

Author SHA1 Message Date
Matthias Wolf
3dd844e597
py-clustershell: new package (#14914) 2020-02-13 10:03:45 +01:00
Matthias Wolf
fb482ae0c9
py-magic: new package (#14912) 2020-02-13 10:03:18 +01:00
Matthias Diener
a337d27874
gdb: added v9.1 (#14919) 2020-02-13 09:51:04 +01:00
Federico Ficarelli
de84bd3f24
hipsycl: new package and new 'sycl' virtual package (#14051) 2020-02-13 07:32:39 +01:00
eugeneswalker
5243d270d4 bmi depends on automake for build 2020-02-12 21:58:35 -08:00
noguchi-k
38303a6a79
macsio: cast JsonGetInt from int to unsigned int (#14736)
* macsio: cast from int to unsigned int

* macsio: apply a patch only when version is 1.1
2020-02-12 20:13:26 -06:00
Todd Gamblin
a7b43f1015 spack python: add -m option to run modules as scripts
It's often useful to run a module with `python -m`, e.g.:

    python -m pyinstrument script.py

Running a python script this way was hard, though, as `spack python` did
not have a similar `-m` option.  This PR adds a `-m` option to `spack
python` so that we can do things like this:

    spack python -m pyinstrument ./test.py

This makes it easy to write a script that uses a small part of Spack and
then profile it.  Previously thee easiest way to do this was to write a
custom Spack command, which is often overkill.
2020-02-12 16:45:41 -08:00
Chuck Atkins
90f3635afd
protobuf: Fix intel compiler failures. (#14916) 2020-02-12 16:21:43 -05:00
Jon Rood
7e50cec5a4
Adding Intel LLVM compiler (#13618)
* Adding Intel LLVM compiler.

* Fixing some minor issues.

* Split build environment on run environment in intel-llvm.
2020-02-12 12:30:04 -06:00
Dan Lipsa
ca66ab6901
Paraview: fix PYTHONPATH for static build. (#14648)
* Fix PYTHONPATH for static build.

* Only for the latest version.
2020-02-12 13:24:09 -05:00
Axel Huebl
3b2c534e73
openPMD-api: Build Env Fix & Dev (#14904)
- fix a missing `env.` prefix in the build environment.
- rename development branch to same name as in git
2020-02-12 10:02:01 +01:00
Axel Huebl
b5a3ee636b
WarpX: master is the new develop (#14898)
WarpX removed the `dev` branch in favor of a simpler,
`master`-centric development model.
`master` is the new development branch and there is no
stable branch anymore (we use tags and release branches
instead).
2020-02-11 20:47:50 -08:00
victorusu
78ce1c7ce4
New package: ReFrame (#14737) 2020-02-11 17:51:26 -08:00
Hadrien G
c8cb480eb7
ROOT: Add Pythia8 support (#14790) 2020-02-11 17:38:22 -08:00
darmac
cf120d7441
OpenCV package: add versions 4.2.0, 4.1.2, and 4.1.1(#14814) 2020-02-11 17:34:44 -08:00
Hadrien G
947dabc356
[dd4hep] Make DDDigi work with current TBB releases (#14791)
Add patch for DDDigi's broken TBB support. The issue is fixed in
DD4hep master so the patch is only required for 1.11.0
2020-02-11 17:17:05 -08:00
Sajid Ali
2c63ea49d1
New package: libvips (#14794) 2020-02-11 17:02:39 -08:00
darmac
630611a786
libdrm: add version 2.4.100 (#14809) 2020-02-11 16:57:18 -08:00
codeandkey
78f16d703d r-truncdist: new package at 1.0-2 2020-02-11 16:52:51 -08:00
Todd Gamblin
c56c4b334d bugfix: spack -V should use working_dir() instead of git -C
- `git -C` doesn't work on git before 1.8.5
- `working_dir` gets us the same effect
2020-02-11 16:52:06 -08:00
Jen Herting
582e7ce2c8 [mono] add version 6.8.0.105 2020-02-11 16:49:35 -08:00
Scott Wittenburg
c2885990b8
Fix intel-mkl package (#14856)
* Add cpio package

* intel-mkl: Depend on cli tool needed during build
2020-02-11 16:21:49 -06:00
Seth R. Johnson
5c33f638d7
Fix QT4 platform detection for linux clang (#14891)
* Fix QT4 platform name for linux clang

* Fix clang compiler flags on QT4
2020-02-11 14:00:02 -06:00
Frédéric Simonis
e8b6c40b31
precice: add version 2.0.0 (#14842)
Added python3 dependency
Added support for new CMake variables
2020-02-11 10:06:03 +01:00
Matthias Diener
7706b76d3a
unifdef: added new package (#14880) 2020-02-11 10:03:44 +01:00
Christoph Junghans
1a41ec766a
heffte: added v0.2 (#14881) 2020-02-11 10:02:17 +01:00
darmac
35df75ee77
hepmc: added versions up to v3.2.0 (#14805) 2020-02-11 09:46:59 +01:00
Brian Van Essen
490508d324
Hydrogen: update dependency on aluminum (#14760)
* Hydrogen now depends on `aluminum +nccl` vs. `aluminum +mpi_cuda`
* Hydrogen: Simplify Mac OS OpenMP-detection logic
* Aluminum: Add Mac OS OpenMP-detection logic
* LBANN: depend on conduit@0.4.0: instead of conduit@master
2020-02-10 12:13:47 -08:00
Massimiliano Culpo
357786ce6b
Spack find: fix queries that specify dependencies (#14757)
Fixes #10019

If multiple instances of a package were installed in a single
instance of Spack, and they differed in terms of dependencies, then
"spack find" would not distinguish specs based on their dependencies.
For example if two instances of X were installed, one with Y and one
with Z, then "spack find X ^Y" would display both instances of X.
2020-02-10 11:22:21 -08:00
Peter Scheibel
4e32505770
libedit package: add version 3.1-20191231 (#14851)
This new version of libedit can make use of an ncurses dependency
built with +termlib (which moves some symbols into a separate
libtinfo).
2020-02-10 10:44:52 -08:00
Glenn P Johnson
37a6b8d54f Fix vim build with ^ncurses+termlib
This PR will set the approriate library if ncurses is built with a
separate tinfo library.
2020-02-10 10:25:35 -08:00
darmac
c77eeca61e icedtea: added versions up to v3.9.0 (#14806) 2020-02-10 11:08:45 +01:00
Glenn Johnson
745a843911 New package: r-biomartr (#14812)
This PR creates the r-biomartr package as well as needed new packages
and updates.

- new dependency: r-philentropy
- update: r-curl
2020-02-10 11:08:04 +01:00
Hadrien G
cb3dbea198 acts-core: added v0.16.0 (#14839)
* Adapt to ACTS v0.16

* ACTS uses the DD4hep XML components nowadays
2020-02-10 11:06:56 +01:00
Glenn Johnson
8aa1eba2e0 New package: r-watermelon (#14864)
This PR creates the r-watermelon package, along with dependencies.

- new package: r-fdb-infiniummethylation-hg19
- new package: r-illuminahumanmethylation450kanno-ilmn12-hg19
- new package: r-lumi
- new package: r-methylumi
- new package: r-roc
- new package: r-txdb-hsapiens-ucsc-hg19-knowngene
- updated package: r-matrixstats, new version needed as a dependency
2020-02-10 10:49:34 +01:00
Glenn Johnson
1ed0efec7d New package: r-suppdists (#14865) 2020-02-10 10:44:17 +01:00
Glenn Johnson
bd442e884a New package: r-imager (#14866)
This PR adds the r-imager package and dependencies.

- new package: r-bmp
- new package: r-readbitmap
2020-02-10 10:44:00 +01:00
Glenn Johnson
ad914c28d7 New package: r-proj (#14872) 2020-02-10 10:43:27 +01:00
Glenn Johnson
d00a3eda6b New package: r-proj4 (#14871) 2020-02-10 10:42:32 +01:00
Glenn Johnson
22df37c328 New package: r-pscbs (#14867)
This PR adds the r-pscbs package along with new dependencies and updates.

- new package: r-aroma-light
- new package: r-r-cache
- updated package: r-r-oo
2020-02-10 10:41:56 +01:00
Glenn Johnson
716978e00c New package: r-copula (#14874)
This PR adds the r-copula package and dependencies.

- new package: r-adgoftest
- new package: r-gsl
- new package: r-pspline
- new package: r-stabledist
2020-02-10 10:40:47 +01:00
Glenn Johnson
42c829adb4 New package: r-gsalib (#14873) 2020-02-10 10:38:44 +01:00
Kai Torben Ohlhus
4d173579cb openblas: added v3.8.0 (#14875) 2020-02-10 10:35:29 +01:00
darmac
f274d89c33 xterm: added versions up to v353 (#14829) 2020-02-10 09:44:50 +01:00
darmac
85b6e3e6d4 openldap: added v2.4.49 (#14815) 2020-02-10 09:40:46 +01:00
darmac
1c5838be5c pngquant : add depency on libpng (#14836) 2020-02-10 09:39:45 +01:00
Kai Torben Ohlhus
3ba5df3763 octave: add 5.2.0 (#14868)
Add version Octave 5.2.0 including sha256.
2020-02-09 21:04:09 -06:00
Glenn Johnson
30b30e11dc New package - r-rmariadb (#14762)
* New package - r-rmariadb

This PR creates the r-rmariadb package. It also includes an update to
the r-dbi package as a newer version of that is needed.

* Update var/spack/repos/builtin/packages/r-rmariadb/package.py

Argh, copy/paste. I wish the mirror would list itself as the archive site as well, but it just mirrors that data field from CRAN site. Thanks for catching that, I will make sure to look for that in the future.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Use mariadb-client

Use mariadb-client so people can set a preferred provider.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-09 19:26:31 -06:00
Todd Gamblin
6d2e6e1f4d Merge branch 'releases/v0.13' into develop 2020-02-09 15:51:39 -08:00
Mark W. Krentel
7a10478708 intel-tbb: fix sha256 sums for 2020 versions
Fixes #14850.  Commit 6b1958219 added versions 2020 and 2020.1 for
intel-tbb as part of updating several intel packages but added the
wrong sha256 sums for the github/01org repository.

Also, version 2020 is 2020, not 2020.0.

Add patch makefile-debug to restore the debug targets.
2020-02-09 12:26:38 -08:00