Commit graph

10587 commits

Author SHA1 Message Date
gauthier12
851fb173c8
med package: add version 4.0.0 (#15652) 2020-03-25 19:10:31 -07:00
iarspider
a2801a8deb
OpenJDK: add version 8u222 (#15677) 2020-03-25 19:00:39 -07:00
Carson Woods
9f256ed953
darshan-util and darshan-runtime: add version 3.1.8 (#15681) 2020-03-25 19:00:15 -07:00
Dan Bonachea
e042bd9d89
UPC++ 2020.3.0 update (#15623)
## Summary

This PR updates and improves the Spack package for [UPC++](https://upcxx.lbl.gov).
I'm an LBL employee and developer on the UPC++ team, as well as the maintainer of this Spack package.

### Key Improvements:
* Adding new 2020.3.0 release and support for use of develop/master branches
    - Our build infrastructure underwent a major change in this release, switching from a hand-rolled Python2 script to a bash-based autoconf work-alike. 
    - The new build system is NOT using autotools (nor does it support some of the more esoteric autoconf options), but the user interface for common builds is similar.
* Add explicit support for an MPI optional dependency
    - New `mpi` variant enables use of the MPI-based spawner (most relevant on loosely coupled clusters), and the (unofficial) mpi-conduit backend
    - This variant is OFF by default, since UPC++ works fine without MPI on many systems, increasing the likelihood first-time Spack users get a working build without needing to correctly setup MPI
* Add support for post-install testing using the test support deployed in the new build infrastructure
* Fix or workaround a few bugs observed during testing 

### Status

The new package has been validated with a variety of specs across over seven different systems, including: NERSC cori, ALCF Theta, OLCF Summit, an in-house Linux cluster, and macOS laptops (Mojave and Catalina).
2020-03-25 16:05:13 -07:00
Axel Huebl
9c0b197460
WarpX: MPI, Backends, Ascent (#15647)
Expose serial/parallel build (MPI), CUDA/OpenMP backends, Clang, and
Ascent bindings.

Interestingly, `warpx +ascent` currently leads to an infinite loop in
the Spack concretizer.
2020-03-25 14:54:13 -07:00
Axel Huebl
3aa225cd5c
openPMD-api: added v0.11.1 (#15659)
Add the latest release with HDF5-1.12 compatibility.
2020-03-25 11:57:00 +01:00
xfzhao
f1aec94719
mothur: specify version of vsearch (#15661) 2020-03-25 11:50:30 +01:00
Ben Morgan
2480217387
gitconddb: new package at v0.1.1 (#15651)
Git-based conditions database for HEP and other experiments.

Use latest release version and current master to support Linux and
macOS. Add core known dependencies and conflicts related to C++17
support.

cxxstd variant added to help transitive dependencies, and for future
support for newer standards in future.
2020-03-25 11:28:06 +01:00
Hadrien G
b8db87e1dc
ACTS: added v0.19 (#15671) 2020-03-25 10:49:53 +01:00
Sinan
24ca071652
pocl: add versions up to v1.4.0 (#15672)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-25 10:49:09 +01:00
Jeffrey Salmond
7e1e98cf8f
julia: added v1.4.0 (#15673) 2020-03-25 10:46:04 +01:00
darmac
16eb86acf2
libwebp: fix sha256 checksum (#15639) 2020-03-25 00:07:34 -07:00
Stephanie Brink
4e6c07529d
xz: add version 5.2.5 (#15656) 2020-03-24 23:05:26 -07:00
Matthias Diener
d099143999 charmpp: add version 6.10.1+cleanups
- change URL to http as our server only supports TLSv1.0, which
not all HTTPS clients accept anymore
- change name of development branch to 'master'
2020-03-24 23:04:41 -07:00
Carson Woods
25e50a9943
pmix: add version 2.2.3 (#15668) 2020-03-24 23:01:24 -07:00
Carson Woods
cfa8e69835
singularity: add version 3.5.3 (#15669) 2020-03-24 23:01:00 -07:00
eugeneswalker
862e13183d
workaround for otf2's erroneous python2 configure requirement (#15653) 2020-03-24 14:11:38 -07:00
Amjad Kotobi
3b7c79b225
r-remotes: added v2.1.1 (#15627) 2020-03-24 10:10:33 +01:00
Tomoki, Karatsu
dfe4e980ea
py-onnx: remove_dllexport_decl. (#15648) 2020-03-24 09:56:39 +01:00
Michael Kuhn
7e0ec0ec09 automake: Add 1.16.2 2020-03-23 18:52:02 -07:00
Andreas Baumbach
7b486fd84d py-ics: add version 0.7 2020-03-23 17:04:04 -07:00
Carson Woods
6a18bfbae8
CMake: add version 3.9.2 (#15644) 2020-03-23 17:03:25 -07:00
Carson Woods
e1f593b6c6
lmod: add version 7.8.1 (#15643) 2020-03-23 17:02:46 -07:00
Piotr Luszczek
d3c1a4c94b
xsdk-examples: add new package at version 0.1.0 (#15621)
* xsdk-examples: add new package at version 0.1.0
2020-03-23 00:10:15 -05:00
Adam J. Stewart
62787a7a3b
NCCL: add 1.2.2 (#15628) 2020-03-22 15:32:53 -05:00
Axel Huebl
a3e3413855
WarpX: Update ES and openPMD (#15611)
Update WarpX for recent developments:
- add openPMD I/O (default: ON)
- remove electro-static solver option (now a runtime option)
- enable tiny profiler by default
- depend on new CXX std support in make scripts for C++14
- WarpX only supports 2D and 3D in cartesian dims
2020-03-21 15:36:15 -07:00
Ben Morgan
bb4e9a7b32
davix: add cxxstd variant (#15593)
* davix: add cxxstd variant

Davix is written in C++, so add this variant to allow dependents to specify
this so a consistent ABI is used.

* davix: fix flake8 errors
2020-03-21 13:27:35 -05:00
Adam J. Stewart
983f9d3419
bash: add patches up to 5.0.16 (#15615) 2020-03-21 12:42:54 -05:00
Adam J. Stewart
7bde39d883
Fix bug in py-dgl installation, add unit tests (#15617) 2020-03-21 11:52:01 -05:00
darmac
4b771bc521
add new package: nfs-ganesha (#15580)
* add new pacakge: nfs-ganesha

* refine package.py

* update bison & flex as build depends
2020-03-21 10:42:08 -05:00
Adam J. Stewart
64737e0632
py-torchtext: add new package (#15604) 2020-03-20 16:01:18 -05:00
Matthias Maiterth
42db143587
freeipmi: Initial commit (#15576)
* freeipmi: Initial commit

Added freeipmi package. Configure and build work fine, install only as root,
thus added warning and added reference to issue #4432 .

* freeipmi: fixed change requests
2020-03-20 14:51:51 -05:00
Benjamin Fovet
74ba247839
Add gmsh v4.5.4 with new options (#15591)
* Add gmsh v4.5.4 with new options

This adds OpenCASCADE as an alternative to the oce package.
A new variant 'privateapi' is added to enable the gmsh private API.

* Make oce conflict with opencascade in gmsh
2020-03-20 14:51:30 -05:00
Benjamin Fovet
d3fafaa868
Add Ceres Solver v1.14.0 with new variants (#15597)
* Add Ceres Solver version 1.14.0

* Add variants for Ceres Solver
2020-03-20 14:51:01 -05:00
Carson Woods
c45644afaa
Add 33.2.1 version with checksum to lua-luaposix (#15600) 2020-03-20 14:50:07 -05:00
Adam J. Stewart
70577e4fd7
py-sentencepiece: add new package (#15601) 2020-03-20 14:42:54 -05:00
Dan Lipsa
9c45c44738
Add version 5.8 and fix sqlite+column_metadata mismatch. (#15450) 2020-03-20 15:26:41 -04:00
eugeneswalker
2f8ff722a9
tau: add dependency on hwloc (#15589) 2020-03-20 11:44:03 -07:00
Adam J. Stewart
3f4d300c84
sentencepiece: add new package (#15596) 2020-03-20 13:39:39 -05:00
Adam J. Stewart
6f3983b1c7
py-dgl: add new package (#15594) 2020-03-20 12:42:24 -05:00
Benjamin Fovet
e66a7530a1
Add NLopt version 2.6.1 (#15595) 2020-03-20 12:42:01 -05:00
Kevin Manalo
3b70c932aa
papi: add version 6.0.0 (#15590) 2020-03-20 10:08:54 -07:00
Dr. Christian Tacke
cf45d38d24
root: Add version 6.20.{00,02} (#15487)
* Add version 6.20.{00,02}, don't yet mark it preferred
* It needs zstd
* It needs numpy (at least for 6.20.00:6.20.03)
* Reorder python dependencies a bit

* Add mlp variant, default False
  Older versions always include mlp, so no conflicts there.
* Disable tmva, because it needs mlp
* tmva needs mlp, so add conflict
2020-03-20 16:55:48 +00:00
Matthieu Dorier
d14a6e6bc7
Added two new versions of spdlog (#15586) 2020-03-20 09:19:06 -05:00
darmac
5f63fc5316
add new package: glusterfs (#15565)
* add new package: glusterfs

* fix list_depth for url

* remove list_depth

* add list_url for glusterfs
2020-03-20 09:18:24 -05:00
darmac
6cccce4932
add new package lksctp-tools (#15564)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-20 10:11:12 +01:00
Adam J. Stewart
03a88a2d3f
py-decorator: added v4.4.2 (#15581) 2020-03-20 10:10:19 +01:00
Adam J. Stewart
b4f1f42e4f
py-networkx: add 2.4 (#15582) 2020-03-20 10:09:48 +01:00
Adam J. Stewart
9a71a76461
py-tfdlpack: add new package (#15583) 2020-03-20 10:08:54 +01:00
Hadrien G
fdf363eaad
acts-core: added v0.18, updated boost dependency (#15584) 2020-03-20 10:06:45 +01:00