* Add rocm 3.7.0 libs
* Make 3.7.0-only dependency on numactl explicit
* Add rocm-device-libs dep to rocm-clang-ocl
* Update the cmakelists dir in rocm-debug-agant
* Make rocm-debug-agent work on 3.7.0
* Disable tensile host; following rocm-arch recommendations
* ldak: new package at 5.1
* flake8
* Re-run tests
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new package: py-gitdb
* Update var/spack/repos/builtin/packages/py-gitdb/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Set GOPATH in build environment to avoid creating files in the user's
default GOPATH (e.g. ~/go).
* Support for external find.
* Added latest releease 0.74.3.
Remove prior built-in Trilinos subrepository.
Added a Trilinos conflict discovered while documenting ForTrilinos:
```
***
*** ERROR: Setting Trilinos_ENABLE_SEACASExodus=OFF which was 'ON' because SEACASExodus has a required library dependence on disabled TPL Netcdf!
***
```
* [py-torch-geometric] depends on py-torch-sparse
* [py-torch-geometric] setting TORCH_CUDA_ARCH_LIST
* [py-torch-geometric] added the rest of the dependencies
* [py-torch-geometric] added cuda variant and added more build env vars
* [py-torch-geometric] added variant info for depenedencies
* [py-torch-geometric] flake8
* [py-torch-geometric] add variant description
* HPCC Benchmark: added HPC Challenge (HPCC) benchmark
* HPCC Benchmark: modified error message on lack of fftw2 interface in MKL
* hpcc: fixed styling add one more installation example
* hpcc: styling fix
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* hpcc: changed include and lib location setter
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* hpcc: fixed styling add one more installation example
* hpcc: removed readme.md
* hpcc: develop repo now is in github
* hpcc: march arguments are set explicitly in case of intel compilers, added -restrict flag, which needed for older intel compilers (at least <=19.0.5.281)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* wrf: new package
* wrf: fix install dir
* wrf: ndown location
* Add more compiler and nesting options to wrf package
* Fix configure that didn't find pgf90, use tempfile and compile in parallel
* WRF v4.2 with parallel I/O support through pnetcdf
Signed-off-by: michael laufer <michael.laufer@toganetworks.com>
* extend Package, compiler wrapper now used, small fixes
Signed-off-by: michael laufer <michael.laufer@toganetworks.com>
* Update var/spack/repos/builtin/packages/wrf/package.py
fixed typo
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Levi Baber <baberlevi@gmail.com>
Co-authored-by: eXact lab <info@exact-lab.it>
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new package: py-update-checker
* add test deps
* Update var/spack/repos/builtin/packages/py-update-checker/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-update-checker/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-update-checker/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove lint stuff.
Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
`configure` script of Modules 4.5.2 is a bit too strict and breaks when
special options like `--disable-dependency-tracking` are set. This issue
will be fixed on Modules project starting version 4.5.3
(cea-hpc/modules#354).
This change adapts `configure` options set when installing version 4.5.2
to avoid options unrecognized on this version.
Fix#18420
* libvterm: renumber version and add 1.0.3
neovim: build on aarrch64
* Remove unneeded comment.
* libvterm: newer bazaar snapshot version is set to version 0.0.
neovim: change for libvterm version change, and libtermkey version bug is fixed.
* update libvterm versions.
* Add new package: byte-unixbench
* refine install flow
* Update var/spack/repos/builtin/packages/byte-unixbench/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new package: py-rios
* flake8
* Update var/spack/repos/builtin/packages/py-rios/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add new package: leptonica
* Update var/spack/repos/builtin/packages/leptonica/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-spacy: new version 2.3.2
update en-core-web-sm to @2.3.1
add en-vectors-web-lg@2.3.0
* update deps
* wasabi
Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
* Update version for package Draco
+ Add support for `draco-7.7.0`.
+ Introduces new `+cuda` variant. This variant is only allowed in version
`7.7.0:`.
+ Restrict `random123` to compatible versions.
+ Restrict `libquo` to compatible versions.
+ Moving forward, require `python@3:`
+ Moving forward, the ``+superlu_dist` variant is not longer supported.
+ Improve printed output for `--test` mode by adding `ctest` option
`--output-on-failure`
+ Provide a patch to support for IBM Spectrum-MPI in version `7.7.0:`
+ Provide a patch to allow variant `~cuda` to actually disable GPU portions of
the code when a GPU is discovered on the local system.
* Remove unnecessary function decoration.
* Adding externals for bison and flex
Added because bison actually pulls in a ton of stuff.
* Need to escape parentheses.
* Need to add re package.
* Adding re package.
* spectrum-mpi: adding external support.
* Package is tested, works on LLNL lassen
* Spectrum external now detects the correct compiler
* Changing code to not output all compilers
Done per becker33's request on #18055
If Thyra isn't explicitly enabled at the package level, trilinos fails
to build.
```
/var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-stage/spack-stage-trilinos-12.18.1-vfmemkls4ncta6qoptm5s7bcmrxnjhnd/spack-src/packages/muelu/adapters/stratimikos/Thyra_XpetraLinearOp_def.hpp:167:15: error:
no member named 'ThyraUtils' in namespace 'Xpetra'
Xpetra::ThyraUtils<Scalar,LocalOrdinal,GlobalOrdinal,Node>::toXpetra(rcpFromRef(X_in), comm);
~~~~~~~~^
```
* py-basemap
* Updated versions + URL attribute
* Update var/spack/repos/builtin/packages/py-basemap/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-basemap/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removed unnecssary comment
* flake8
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding external support for mvapich2.
This picks up all the options that are currently settable by
the spack package. It also detects the compiler and sets it
appropriately.
* Removing debugging printing.
* Adding changes suggested by @nithintsk
+ Added version 2.1.9
+ Previously the SZ package incorrectly depended on CMake without a
version dependancy, but actually version 3.13 or newer is required
+ Added myself as a maintainer for the SZ spack package
This is a bug release with some new features and bug fixes. Among them:
[Batch] Set number of MPI processes for SLURM. (Ben Tovar)
[General] Use the right signature when overriding gettimeofday. (Tim
Shaffer)
[Resource Monitor] Add context-switch count to final summary. (Ben
Tovar)
[Resource Monitor] Fix kbps to Mbps typo in final summary. (Ben Tovar)
[WorkQueue] Update example apps to python3. (Douglas Thain)
* samtools: Add version 0.1.8 for OSS soapdenovo-trans.
* Add depend on zlib and samtools to build on aarch64.
* soapdenovo-trans: Change the condition of depend on zlib and samtools.
* New package: cxxopts
* Use +unicode instead of unicode=True
- Make the unicode option more explicit
* Add two new variants to spack for upcoming 1.5, stable and develop
* Add as maintainer
* Add depends_on on clauses
* Remove unrelated change
* qgis
* Update package.py
QGIS 3.12.1 can use PROJ >= 4.9.3. Therefore both version restrictions on PROJ were incorrect.
https://github.com/qgis/QGIS/blob/final-3_12_1/INSTALL
* Update package.py
Add explanation to (hopefully temporary) removal of hdf5 dependency.
* Remove overly restrictive GRASS version number.
* flake8
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Set location for dependencies specifying explicitly both
the include and lib path. This permits to handle cases where
the libraries are installed in lib64 instead of lib.
fixes#17556fixes#10842closes#18150
- add cuda variant, enabled by default, but conflicting with
strumpack@:3.9.999
- add zfp variant, enabled by default, but conflicting with
strumpack@:3.9.999
- update minimum CMake version to 3.11
- for version 4.0.0:, do not use mpi wrappers. v4.0.0 uses CMake
MPI targets
- for version 4.0.0, add dependency on butterflypack@1.2.0:
- remove versions 3.1.0 and older
- make parmetis variant True by default
- add TODO for slate variant (spack package not ready yet)
While I believe there must have been a reason to restrict libtool to <=
2.4.2, adios compiles just fine with libtool 2.4.6 for me.
In fact, without this change, I'm getting this error:
libtool: Version mismatch error. This is libtool 2.4.6, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.6
This doesn't make much sense, since spack did build libtool@2.4.2 as a
dependency, and was supposedly trying to use it. My guess is that on
this system (NERSC's cori) the system libtool in /usr/bin, which is
2.4.6 somehow got picked up partially.
Semi-recently the lua spackage was updated to explicitly add libtinfow
to the lua build line. Ncurses provides this but only when the +termlib
variant is enabled
* New interface reconstruction package
* forgot to put in CMake option for Jali
* cleanup whitespace
* fix lines with more than 79 chars
* more long line cleanup
* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
* New interface reconstruction package
* forgot to put in CMake option for Jali
* cleanup whitespace
* fix lines with more than 79 chars
* more long line cleanup
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
See #18033
libssh seemed to detect and link to system krb5 libraries if found
to provide gssapi support, causing issues/system dependencies/etc.
We add a boolean variant gssapi
If +gssapi, the spack krb5 package is added as a dependency.
If ~gssapi, the Cmake flags are adjusted to not use gssapi so that
does not link to any krb5 package.
xz-utils already builds a shared library. The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
* Add Collier and SysCalc recipes
* Remove extra syscalc version
* Build collier with -j1 for @:1.2.4
* Add recipe for gosam-contrib
* Update gosam-contrib recipe with 'provides'
* Madgraph recipe, first version
* Finalize madgraph recipe + flake8
* Make py2 version of madgraph default; fix hash for syscalc; fix patch
* Handle virtual packages (#3)
* Update package.py
* Update packages.yaml
* Remove virtual packages - pt. 1
* Remove virtual packages - pt. 2
* Changes from review - pt. 1
* Changes from code review - pt. 2
* Update var/spack/repos/builtin/packages/collier/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/madgraph5amc/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add hash for version 2.7.2 (available in our private mirror)
* Fixes for 2.7.3 family
* Patches for 2.7.3{.py3,}{.atlas,}
* Fix hash of syscalc
* Hack to fix concretization (2.7.3 matches 2.7.3.py3)
* Add conflict statement (reported to devs)
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
* Delete madgraph5amc-2.7.2.atlas.patch
* Delete madgraph5amc-2.7.2.patch
* Update package.py
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding new packages Mvapich2x and Mvapich2-GDR which can be installed only via binary mirrors
* Added docstring descriptions to both packages
* Removed variant wrapper for cuda dependencies
* Fixed multiple flake8 errors
* Updated APIs to pass unit tests
* Updated APIs for MVAPICH2-X package and fixed flake8 warnings for MVAPICH2-GDR
* Changed url back to single line
* Removed extra parantesis around URL string
Co-authored-by: nithintsk <nithintsk@github.com>
* [root] add dataframe cmake option
@chissg @HadrienG2 @drbenmorgan
This has been a separate cmake option starting v6-19 I believe: 31292b9082
It should default to true -- not sure why, but this recipe sets it to off.
I could add a variant too, but since it has become an integral part of root and doesn't introduce extra dependencies, I'd propose to just set it to true like I do here.
* Update package.py
