Commit graph

6119 commits

Author SHA1 Message Date
Harmen Stoppels
84a70c26d9
buildcache metadata: store hash -> prefix mapping (#37404)
This ensures that:

a) no externals are added to the tarball metadata file
b) no externals are added to the prefix to prefix map on install, also
for old tarballs that did include externals
c) ensure that the prefix -> prefix map is always string to string, and
doesn't contain None in case for some reason a hash is missing
2023-05-04 10:09:22 +02:00
Bryce Torcello
541cdbbef2
docs: update RHEL/CentOS system prerequisites (#36720) 2023-05-03 19:04:16 +02:00
Egbert Eich
1491d8471d
Add 'zypper' to the valid container.os_packages options (#36681)
Signed-off-by: Egbert Eich <eich@suse.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: e4t <e4t@users.noreply.github.com>
2023-05-03 13:05:14 +02:00
Massimiliano Culpo
03d1841385
Allow adding specs to an environment without the 'specs' attribute (#37378) 2023-05-03 13:01:16 +02:00
Harmen Stoppels
7c8590ee44
remove unused global in bindist tests (#37358)
* remove unused global in bindist tests
* remove unused function
2023-05-03 05:34:14 -04:00
Scott Wittenburg
c7e60f441a
buildcache push: improve printing (#36141) 2023-05-03 10:42:22 +02:00
Massimiliano Culpo
a92f1e37aa
Disable module file generation by default (#37258)
* Disable module generation by default (#35564)

a) It's used by site administrators, so it's niche
b) If it's used by site administrators, they likely need to modify the config anyhow, so the default config only serves as an example to get started
c) it's too arbitrary to enable tcl, but disable lmod

* Remove leftover from old module file schema

* Warn if module file config is detected and generation is disabled

---------

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-05-02 10:28:27 +02:00
Massimiliano Culpo
3c3a4c7577
Factor YAML manifest manipulation out of the Environment class (#36927)
Change the signature of the Environment.__init__ method to have
a single argument, i.e. the directory where the environment manifest 
is located. Initializing that directory is now delegated to a function 
taking care of all the error handling upfront. Environment objects 
require a "spack.yaml" to be available to be constructed.

Add a class to manage the environment manifest file. The environment 
now delegates to an attribute of that class the responsibility of keeping
track of changes modifying the manifest. This allows simplifying the 
updates of the manifest file, and helps keeping in sync the spec lists in
memory with the spack.yaml on disk.
2023-05-01 15:06:10 +02:00
Greg Becker
21cadf96e0
Spec.format: fix bug in dependency hash formatting (#37073)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2023-04-28 23:33:05 +02:00
Harmen Stoppels
c85877566f
Reduce the number of stat calls in "spack verify" (#37251)
Spack comes to a crawl post-install of nvhpc, which is partly thanks to
this post install hook which has a lot of redundancy, and isn't correct.

1. There's no need to store "type" because that _is_ "mode".
2. There are more file types than "symlink", "dir", "file".
3. Don't checksum device type things
4. Don't run 3 stat calls (exists, stat, isdir/islink), but one lstat
   call
5. Don't read entire files into memory

I also don't know why `spack.crypto` wasn't used for checksumming, but I
guess it's too late for that now. Finally md5 would've been the faster
algorithm, which would've been fine given that a non cryptographicall
checksum was used anyways.
2023-04-28 13:24:24 +00:00
Jonathon Anderson
cba8d1253d
Add container images supporting RHEL alternatives (#36713)
Add container support for AlmaLinux, Fedora 37 and 38 and Rocky Linux
2023-04-28 12:28:33 +02:00
Harmen Stoppels
97beb2658b
require: do not allow additional properties (#37174) 2023-04-25 11:52:51 +02:00
Adam J. Stewart
7df2865dce
Copy more logs to CI artifacts (#36783)
* Copy more logs to CI artifacts

* Trigger rebuilds again

* Remove test variant
2023-04-24 10:08:30 -05:00
John W. Parent
d8451b0c3f
Windows: shell variables are case-insensitive (#36813)
If we modify both Path and PATH, on Windows they will clobber one
another. This PR updates the shell modification logic to automatically
convert variable names to upper-case on Windows.
2023-04-21 11:38:58 -07:00
markus-ferrell
c64ca97877
Enable verify tests on windows (#36975) 2023-04-21 14:32:33 +02:00
markus-ferrell
cd4dddbef1
Enable versions cmd tests on windows (#36974) 2023-04-21 14:31:14 +02:00
markus-ferrell
e77b1da772
Enable test suite tests on windows (#36966) 2023-04-21 14:18:06 +02:00
markus-ferrell
e1e8d3b66e
Enable database tests for windows (#36968) 2023-04-21 14:15:29 +02:00
markus-ferrell
962df6334d
Enable config values tests on windows (#36969) 2023-04-21 14:15:09 +02:00
markus-ferrell
ba255cf5ec
Enable graph tests on windows (#36967) 2023-04-21 14:14:51 +02:00
Massimiliano Culpo
cac44b9e15
Update archspec to latest release (#37070)
Fix -mcpu flags for gcc on neoverse-v1

Add support for NVHPC flags
2023-04-21 11:01:37 +02:00
Massimiliano Culpo
1b7cf171ce
Use core API to create a Makefile during bootstrapping (#37023) 2023-04-20 15:11:56 +02:00
Harmen Stoppels
d51af675ef
make version(...) kwargs explicit (#36998)
- [x] Replace `version(ver, checksum=None, **kwargs)` signature with
      `version(ver, checksum=None, *, sha256=..., ...)` explicitly listing all arguments.
- [x] Fix various issues in packages:
  - `tags` instead of `tag`
  - `default` instead of `preferred`
  - `sha26` instead of `sha256`
  - etc

Also, use `sha256=...` consistently.

Note: setting `sha256` currently doesn't validate the checksum length, so you could do
`sha256="a"*32` and it would get checked as `md5`... but that's something for another PR.
2023-04-19 14:17:47 -07:00
Harmen Stoppels
ae909b3688
Extract depfile logic from cli command into a core module (#36995) 2023-04-19 14:36:29 +02:00
Alec Scott
3a5e48f476
installer.py: drop build edges of installed packages by default (#36707)
This means that `spack install` will now build the minimal set of packages
required to install the root(s).

To opt out of build edge pruning, use `spack install --include-build-deps`.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-04-19 10:00:40 +02:00
Todd Gamblin
b260234faf editing: add higher-precedence SPACK_EDITOR environment variable
Other tools like git support `GIT_EDITOR` which takes higher precedence than the
standard `VISUAL` or `EDITOR` variables. This adds similar support for Spack, in the
`SPACK_EDITOR` env var.

- [x] consolidate editor code from hooks into `spack.util.editor`
- [x] add more editor tests
- [x] add support for `SPACK_EDITOR`
- [x] add a documentation section for controlling the editor and reference it
2023-04-18 16:23:00 -07:00
Todd Gamblin
2f30da1762 refactor: unify use of spack.util.editor
Code from `spack.util.editor` was duplicated into our licensing hook in #11968. We
really only want one place where editor search logic is implemented. This consolidates
the logic into `spack.util.editor`, including a special case to run `gvim` with `-f`.

- [x] consolidate editor search logic in spack.util.editor
- [x] add tests for licensing case, where `Executable` is used instead of `os.execv`
- [x] make `_exec_func` argument of `editor()` into public `exec_fn` arg
- [x] add type annotations
2023-04-18 16:23:00 -07:00
Massimiliano Culpo
d92c21ec97
Fix compilation on Cray (target: any) (#37011)
fixes #36628

Fix using compilers that declare "target: any" in their
configuration. This should happen only on Cray with the
module based programming environment.
2023-04-18 15:47:52 -07:00
Jonathon Anderson
08fd8c8d0a
spack ci: preserve custom attributes in build jobs (#36651)
* Simplify test/cmd/ci.py::test_ci_generate_with_custom_scripts

* Rearrange the build-job logic in generate_gitlab_ci_yaml

* Preserve all unknown attributes in build jobs

* Slip tests for custom attributes in the tests for other job types

* Support custom artifacts

* [@spackbot] updating style on behalf of blue42u

* Don't bother sorting needs

---------

Co-authored-by: blue42u <blue42u@users.noreply.github.com>
2023-04-18 15:40:43 -05:00
Todd Gamblin
6845f41d67
Revert addition of SPACK_EDITOR pending review.
This reverts commit d8a26905ee.
This reverts commit 1ee049ccc3.

These were spuriously pushed to `develop`.
2023-04-18 03:57:24 -07:00
Todd Gamblin
1ee049ccc3
editing: add higher-precedence SPACK_EDITOR environment variable
Other tools like git support `GIT_EDITOR` which takes higher precedence than the
standard `VISUAL` or `EDITOR` variables. This adds similar support for Spack, in the
`SPACK_EDITOR` env var.

- [x] consolidate editor code from hooks into `spack.util.editor`
- [x] add more editor tests
- [x] add support for `SPACK_EDITOR`
- [x] add a documentation section for controlling the editor and reference it
2023-04-18 03:42:56 -07:00
Todd Gamblin
d8a26905ee
refactor: unify use of spack.util.editor
Code from `spack.util.editor` was duplicated into our licensing hook in #11968. We
really only want one place where editor search logic is implemented. This consolidates
the logic into `spack.util.editor`, including a special case to run `gvim` with `-f`.

- [x] consolidate editor search logic in spack.util.editor
- [x] add tests for licensing case, where `Executable` is used instead of `os.execv`
- [x] make `_exec_func` argument of `editor()` into public `exec_fn` arg
- [x] add type annotations
2023-04-18 03:00:04 -07:00
Greg Becker
480b7f397e
Allow users to remove items from hierarchy per-path (#31351)
* lmod modules: allow users to remove items from hierarchy per-spec

This allows MPI wrappers that depend on MPI to be removed from the MPI portion of
the hierarchy and be made available when the appropriate compiler is loaded.

module load gcc
module load mpi-wrapper  # implicitly loads mpi
module load hdf5

This allows users to treat an mpi wrapper like an mpi program
2023-04-17 22:17:11 -07:00
Harmen Stoppels
381c0af988
Revert "move depfile logic into its own module, separate traversal logic from model (#36911)" (#36985)
This reverts commit a676f706a8.
2023-04-17 20:58:38 +02:00
Harmen Stoppels
a676f706a8
move depfile logic into its own module, separate traversal logic from model (#36911) 2023-04-17 15:27:01 +02:00
Doug Jacobsen
690394fabc
Change environment modifications to escape with double quotes (#36789)
This commit changes the environment modifications class to escape
strings with double quotes instead of single quotes.

Single quotes prevent the expansion of enviornment variables that are
nested within environment variable definitions.
2023-04-14 10:13:17 -07:00
Scott Wittenburg
bfa94c5781
gitlab ci: Better tagging of "service" jobs (#36846)
- Tag non-rebuild jobs to target a cheaper (and more highly available)
subset of runners.

- Add missing resource requests to these jobs as well.
2023-04-14 09:03:12 -06:00
Massimiliano Culpo
9ec289857c
netcdf: fix bugs introduced with multiple build systems split (#36825)
Fixes #36689

- The "base" builder class should be last in the MRO
- `filter_compiler_wrappers` needs to be moved to builders
- Decorating a function from a mixin class require using
   the correct metaclass for the mixin
2023-04-14 10:59:12 +02:00
Wouter Deconinck
ff319e9863
Resolve <include-fragment> tags e.g. in github release pages (#36674)
This aims to resolve #34164 by resolving the <include-fragment> tags
that GitHub has started using for their release pages, see
https://github.github.io/include-fragment-element/.

This feels a bit hacky but intended as a starting point for discussion.
After reading a page during spidering, it first parses for
include-fragments, gets them all, and treats them all as separate pages.
Then it looks for href links in both the page itself and the fragments.

Co-authored-by: Alec Scott <alec@bcs.sh>
2023-04-13 20:26:26 +02:00
Massimiliano Culpo
d918ae0bde
containerize: strip binaries in a less aggressive way (#36683) 2023-04-13 17:09:34 +02:00
John W. Parent
530669346a
Windows/MSVC: propagate all VCVARS changes to Spack env (#36582)
MSVC compilers rely on vcvars environment setup scripts to establish
build environement variables neccesary for all projects to build
successfully. Prior to this we were only piping LIB, INCLUDE, and PATH
change through.

Instead we need to propegate all changes to the env variables made by
VCVARs in order to establish robust support for the MSVC compiler.
This most significantly impacts projects that need to be build with
NMake and MSBuild
2023-04-11 19:04:34 -04:00
markus-ferrell
3edb044706
Windows testing: reenable tests for "spack dependents" (#36786)
All the tests worked out of the box. This just removes the skip statements.
2023-04-11 14:30:40 -07:00
Harmen Stoppels
1c3961bdd0
Remove a unit-test that monkey-patches os.stat (#36757)
"test_create_stage_root_bad_uid" started failing as pytest updated to v7.3.0
2023-04-11 14:02:35 +02:00
kwryankrattiger
b2310f9e64
Ci backwards compat (#36045)
* CI: Fixup docs for bootstrap.

* CI: Add compatibility shim

* Add an update method for CI

Update requires manually renaming section to `ci`. After
this patch, updating and using the deprecated `gitlab-ci` section
should be possible.

* Fix typos in generate warnings

* Fixup CI schema validation

* Add unit tests for legacy CI

* Add deprecated CI stack for continuous testing

* Allow updating gitlab-ci section directly with env update

* Make warning give good advice for updating gitlab-ci

* Fix typo in CI name

* Remove white space

* Remove unneeded component of deprected-ci
2023-04-10 16:46:45 -05:00
Massimiliano Culpo
a7b2196eab
Fix incorrect reformatting of spack.yaml (#36698)
* Extract a method to warn when the manifest is not up-to-date

* Extract methods to update the repository and ensure dir exists

* Simplify further the write method, add failing unit-test

* Fix the function computing YAML equivalence between two instances
2023-04-07 13:37:28 +02:00
Massimiliano Culpo
0b9694575f
spack install: fail if --log-file and not --log-format (#36684)
fixes #34551

"spack install" now fails if a user passed the --logfile option without specifying a log format.
2023-04-06 09:09:18 -07:00
Massimiliano Culpo
3e1c6b27a4
Update archspec to HEAD of develop (#36657) 2023-04-05 13:23:42 -04:00
Jonathon Anderson
78f5b2a2c6
Add workflow:rules:always to spack ci output (#36011) 2023-04-04 10:03:58 -05:00
Harmen Stoppels
dc1399386c
Make spack config update work on environments (#36542)
Previously `spack -e bla config update <section>` would treat the
environment config scope as standard config file instead of a single
file config scope. This fixes that.
2023-04-04 10:19:05 +02:00
Harmen Stoppels
e9a1d0a157
filter __spack_path_placeholder__ in generated module files after buildcache install (#36611)
* filter __spack_path_placeholder__ in generated module files after buildcache install

* fix windows
2023-04-04 09:45:43 +02:00