Problem: GCC 9.4.0 catches a bad integer comparison in
resource/hlapi/bindings/c++/reapi_cli_impl.hpp in flux-sched@0.22.0
and current master.
Add a patch to work around the problem until an upstream fix is
available.
* use the init.defaultBranch name, not master
* make tcl and modules/common independent
Both used to use not just the same directory, but the same *file* for
their outputs. In parallel this can cause problems, but it can also
accidentally allow expected failures to pass if the file is left around
by mistake.
* use a non-global misc_cache in tests
* make pkg tests resilient to gitignore
* make source cache and module directories non-global
`make` solves a lot of headaches that would otherwise have to be implemented in Spack:
1. Parallelism over packages through multiple `spack install` processes
2. Orderly output of parallel package installs thanks to `make --sync-output=recurse` or `make -Orecurse` (works well in GNU Make 4.3; macOS is unfortunately on a 16 years old 3.x version, but it's one `spack install gmake` away...)
3. Shared jobserver across packages, which means a single `-j` to rule them all, instead of manually finding a balance between `#spack install processes` & `#jobs per package` (See #30302).
This pr adds the `spack env depfile` command that generates a Makefile with dag hashes as
targets, and dag hashes of dependencies as prerequisites, and a command
along the lines of `spack install --only=packages /hash` to just install
a single package.
It exposes two convenient phony targets: `all`, `fetch-all`. The former installs the environment, the latter just fetches all sources. So one can either use `make all -j16` directly or run `make fetch-all -j16` on a login node and `make all -j16` on a compute node.
Example:
```yaml
spack:
specs: [perl]
view: false
```
running
```
$ spack -e . env depfile --make-target-prefix env | tee Makefile
```
generates
```Makefile
SPACK ?= spack
.PHONY: env/all env/fetch-all env/clean
env/all: env/env
env/fetch-all: env/fetch
env/env: env/.install/cdqldivylyxocqymwnfzmzc5sx2zwvww
@touch $@
env/fetch: env/.fetch/cdqldivylyxocqymwnfzmzc5sx2zwvww env/.fetch/gv5kin2xnn33uxyfte6k4a3bynhmtxze env/.fetch/cuymc7e5gupwyu7vza5d4vrbuslk277p env/.fetch/7vangk4jvsdgw6u6oe6ob63pyjl5cbgk env/.fetch/hyb7ehxxyqqp2hiw56bzm5ampkw6cxws env/.fetch/yfz2agazed7ohevqvnrmm7jfkmsgwjao env/.fetch/73t7ndb5w72hrat5hsax4caox2sgumzu env/.fetch/trvdyncxzfozxofpm3cwgq4vecpxixzs env/.fetch/sbzszb7v557ohyd6c2ekirx2t3ctxfxp env/.fetch/c4go4gxlcznh5p5nklpjm644epuh3pzc
@touch $@
env/dirs:
@mkdir -p env/.fetch env/.install
env/.fetch/%: | env/dirs
$(info Fetching $(SPEC))
$(SPACK) -e '/tmp/tmp.7PHPSIRACv' fetch $(SPACK_FETCH_FLAGS) /$(notdir $@) && touch $@
env/.install/%: env/.fetch/%
$(info Installing $(SPEC))
+$(SPACK) -e '/tmp/tmp.7PHPSIRACv' install $(SPACK_INSTALL_FLAGS) --only-concrete --only=package --no-add /$(notdir $@) && touch $@
# Set the human-readable spec for each target
env/%/cdqldivylyxocqymwnfzmzc5sx2zwvww: SPEC = perl@5.34.1%gcc@10.3.0+cpanm+shared+threads arch=linux-ubuntu20.04-zen2
env/%/gv5kin2xnn33uxyfte6k4a3bynhmtxze: SPEC = berkeley-db@18.1.40%gcc@10.3.0+cxx~docs+stl patches=b231fcc arch=linux-ubuntu20.04-zen2
env/%/cuymc7e5gupwyu7vza5d4vrbuslk277p: SPEC = bzip2@1.0.8%gcc@10.3.0~debug~pic+shared arch=linux-ubuntu20.04-zen2
env/%/7vangk4jvsdgw6u6oe6ob63pyjl5cbgk: SPEC = diffutils@3.8%gcc@10.3.0 arch=linux-ubuntu20.04-zen2
env/%/hyb7ehxxyqqp2hiw56bzm5ampkw6cxws: SPEC = libiconv@1.16%gcc@10.3.0 libs=shared,static arch=linux-ubuntu20.04-zen2
env/%/yfz2agazed7ohevqvnrmm7jfkmsgwjao: SPEC = gdbm@1.19%gcc@10.3.0 arch=linux-ubuntu20.04-zen2
env/%/73t7ndb5w72hrat5hsax4caox2sgumzu: SPEC = readline@8.1%gcc@10.3.0 arch=linux-ubuntu20.04-zen2
env/%/trvdyncxzfozxofpm3cwgq4vecpxixzs: SPEC = ncurses@6.2%gcc@10.3.0~symlinks+termlib abi=none arch=linux-ubuntu20.04-zen2
env/%/sbzszb7v557ohyd6c2ekirx2t3ctxfxp: SPEC = pkgconf@1.8.0%gcc@10.3.0 arch=linux-ubuntu20.04-zen2
env/%/c4go4gxlcznh5p5nklpjm644epuh3pzc: SPEC = zlib@1.2.12%gcc@10.3.0+optimize+pic+shared patches=0d38234 arch=linux-ubuntu20.04-zen2
# Install dependencies
env/.install/cdqldivylyxocqymwnfzmzc5sx2zwvww: env/.install/gv5kin2xnn33uxyfte6k4a3bynhmtxze env/.install/cuymc7e5gupwyu7vza5d4vrbuslk277p env/.install/yfz2agazed7ohevqvnrmm7jfkmsgwjao env/.install/c4go4gxlcznh5p5nklpjm644epuh3pzc
env/.install/cuymc7e5gupwyu7vza5d4vrbuslk277p: env/.install/7vangk4jvsdgw6u6oe6ob63pyjl5cbgk
env/.install/7vangk4jvsdgw6u6oe6ob63pyjl5cbgk: env/.install/hyb7ehxxyqqp2hiw56bzm5ampkw6cxws
env/.install/yfz2agazed7ohevqvnrmm7jfkmsgwjao: env/.install/73t7ndb5w72hrat5hsax4caox2sgumzu
env/.install/73t7ndb5w72hrat5hsax4caox2sgumzu: env/.install/trvdyncxzfozxofpm3cwgq4vecpxixzs
env/.install/trvdyncxzfozxofpm3cwgq4vecpxixzs: env/.install/sbzszb7v557ohyd6c2ekirx2t3ctxfxp
env/clean:
rm -f -- env/env env/fetch env/.fetch/cdqldivylyxocqymwnfzmzc5sx2zwvww env/.fetch/gv5kin2xnn33uxyfte6k4a3bynhmtxze env/.fetch/cuymc7e5gupwyu7vza5d4vrbuslk277p env/.fetch/7vangk4jvsdgw6u6oe6ob63pyjl5cbgk env/.fetch/hyb7ehxxyqqp2hiw56bzm5ampkw6cxws env/.fetch/yfz2agazed7ohevqvnrmm7jfkmsgwjao env/.fetch/73t7ndb5w72hrat5hsax4caox2sgumzu env/.fetch/trvdyncxzfozxofpm3cwgq4vecpxixzs env/.fetch/sbzszb7v557ohyd6c2ekirx2t3ctxfxp env/.fetch/c4go4gxlcznh5p5nklpjm644epuh3pzc env/.install/cdqldivylyxocqymwnfzmzc5sx2zwvww env/.install/gv5kin2xnn33uxyfte6k4a3bynhmtxze env/.install/cuymc7e5gupwyu7vza5d4vrbuslk277p env/.install/7vangk4jvsdgw6u6oe6ob63pyjl5cbgk env/.install/hyb7ehxxyqqp2hiw56bzm5ampkw6cxws env/.install/yfz2agazed7ohevqvnrmm7jfkmsgwjao env/.install/73t7ndb5w72hrat5hsax4caox2sgumzu env/.install/trvdyncxzfozxofpm3cwgq4vecpxixzs env/.install/sbzszb7v557ohyd6c2ekirx2t3ctxfxp env/.install/c4go4gxlcznh5p5nklpjm644epuh3pzc
```
Then with `make -O` you get very nice orderly output when packages are built in parallel:
```console
$ make -Orecurse -j16
spack -e . install --only-concrete --only=package /c4go4gxlcznh5p5nklpjm644epuh3pzc && touch c4go4gxlcznh5p5nklpjm644epuh3pzc
==> Installing zlib-1.2.12-c4go4gxlcznh5p5nklpjm644epuh3pzc
...
Fetch: 0.00s. Build: 0.88s. Total: 0.88s.
[+] /tmp/tmp.b1eTyAOe85/store/linux-ubuntu20.04-zen2/gcc-10.3.0/zlib-1.2.12-c4go4gxlcznh5p5nklpjm644epuh3pzc
spack -e . install --only-concrete --only=package /sbzszb7v557ohyd6c2ekirx2t3ctxfxp && touch sbzszb7v557ohyd6c2ekirx2t3ctxfxp
==> Installing pkgconf-1.8.0-sbzszb7v557ohyd6c2ekirx2t3ctxfxp
...
Fetch: 0.00s. Build: 3.96s. Total: 3.96s.
[+] /tmp/tmp.b1eTyAOe85/store/linux-ubuntu20.04-zen2/gcc-10.3.0/pkgconf-1.8.0-sbzszb7v557ohyd6c2ekirx2t3ctxfxp
```
For Perl, at least for me, using `make -j16` versus `spack -e . install -j16` speeds up the builds from 3m32.623s to 2m22.775s, as some configure scripts run in parallel.
Another nice feature is you can do Makefile "metaprogramming" and depend on packages built by Spack. This example fetches all sources (in parallel) first, print a message, and only then build packages (in parallel).
```Makefile
SPACK ?= spack
.PHONY: env
all: env
spack.lock: spack.yaml
$(SPACK) -e . concretize -f
env.mk: spack.lock
$(SPACK) -e . env depfile -o $@ --make-target-prefix spack
fetch: spack/fetch
@echo Fetched all packages && touch $@
env: fetch spack/env
@echo This executes after the environment has been installed
clean:
rm -rf spack/ env.mk spack.lock
ifeq (,$(filter clean,$(MAKECMDGOALS)))
include env.mk
endif
```
* Use patches from IBM's Open CE project to enable PyTorch to build on
Power systems.
Cherry-pick a patch to allow earlier versions of PyTorch to build with
CUDA 11.4.
* Update var/spack/repos/builtin/packages/py-torch/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update totalview package.py with new version and maintainer
* Update totalview/package.py version order
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* octopus: adding versions up to 11.4
* octopus: add smoke tests
* octopus: add necessary flags for gcc@10
* octopus: update to compilation and dependencies
* octopus: adding new variants
* octopus: remove 'poke' (as this poke is not in spack [yet])
* octopus: allow compilation from git repo develop branch
* octopus: adapt to spack style requirements
* octopus: add maintainer
* octopus: make tests after install optional
Thank you @tldahlgren
* octopus: follow recommended practice for test input data
Move the two configuration files we use for smoke tests into `test`
subdirectory. Thanks @tldahlgren.
* Adding maintainer
with their agreement by email
* octopus: reduce duplication of flags
- part of code review
* octopus: https is preferred over http
* octopus: remove .99 from versioning information
Thanks to https://github.com/spack/spack/pull/26402, we can drop the
"2:3.99" notation when we mean all versions 2.x and 3.x
Examples: b9e72557e8 (diff-b8373d30b3a141c495c2281273ee6184fc513413142afaf2adac1f406cd6b0d7)
(from review)
* octopus: args.extend([x]) -> args.append(x)
(hint from review)
libassimp has been a dependency for all of 5.x but expressing that has
varied significantly throughout the 5.x lifecycle:
v5.0: qt3d uses internal-only libassimp
v5.5: external-only libassimp
v5.6: either internal or external libassimp via autodetection
v5.9: user-selectable internal-vs-external via -assimp
v5.14: additional qtquick3d module uses -assimp
v5.15: qtquick3d switches to the -quick3d-assimp option
* current bug where the incorrect target is setup
* Add mimalloc package
* Add mimalloc as allocator option to pika
* Add mimalloc as allocator option to hpx
* Set git property globally instead of per-version in pika, hpx, and mimalloc packages
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
Strictly, `sed` is a `build` and `run` dependency in all gpi-2
versions, whereas `gawk` is a `run` (`build` and `run`) dependency for
gpi-2 versions greater or equal (less) than 1.4.0
Gitlab pipelines run for spack already have other S3 storage locations
configured for storage of binaries, so this PR removes the redundant
per-pipeline mirror. As a result, the "cleanup" jobs will no longer be
generated at the end of each pipeline, removing one possible point of
pipeline failure.
The go-bootstrap package doesn't work on aarch64 platforms, so the only way
to build Go is to use gccgo.
Also, some versions of gccgo have a bug that prevents them from compiling
go (see golang/go#47771), so this patch limits gcc to versions newer than
10.4.0 or 11.3.0.
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
