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Author SHA1 Message Date
Adam J. Stewart
df777bf077 Add autogen package (#3542) 2017-03-24 15:44:34 -05:00
Adam J. Stewart
eca8f548dc coreutils can no longer be built in-source (#3543) 2017-03-24 15:44:01 -05:00
George Hartzell
b5acd5e44b Fix r package, tk no longer has an X variant (#3544) 
Tk recently lost its X variant (it now always uses X).

That broke r, this commit fixes it.

Tested on CentOS 7.
 2017-03-24 15:43:25 -05:00
Adam J. Stewart
08799eac23 Add latest version of GNU Guile (#3541) 2017-03-24 15:20:52 -05:00
Adam J. Stewart
a60210f6b2 Add latest version of bdw-gc (#3539) 2017-03-24 15:20:25 -05:00
Adam J. Stewart
8a463c07ea Convert libatomic-ops to AutotoolsPackage (#3540) 2017-03-24 15:13:05 -05:00
Adam J. Stewart
3c96749622 Add latest version of libunistring (#3538) 2017-03-24 14:57:42 -05:00
Adam J. Stewart
1fe987949f Clean up the gcc package (#3511) 
* Clean up the gcc package

* Add preliminary testing support

* Older versions of GCC do not depend on MPC

* DejaGnu 1.4.4 cannot be built in parallel

* Fix GCC test dir

* Add two more deps required to run the testsuite
 2017-03-24 14:56:22 -05:00
Mark Olesen
268d48b407 CONFIG: update mxml versions (#3534) 2017-03-24 14:22:26 -05:00
Jimmy Tang
be5bb33aac Initial add of dev package (#3533) 
* Initial add of dev package

* Use a more acceptable URL
 2017-03-24 13:12:57 -05:00
健美猫
c68295df2c Add cuda support for gromacs. (#3527) 2017-03-24 07:48:08 -05:00
George Hartzell
4a36f23fa8 Add release info for git v2.12.1 (#3532) 
Add info for git and git-manpages.

Built/tested on CentOS7.
 2017-03-23 17:43:28 -05:00
Adam J. Stewart
929a3317e9 Add env vars for Intel VTune Amplifier (#3531) 
* Add env vars for Intel VTune Amplifier

* Flake8 fix
 2017-03-23 15:58:12 -05:00
Adam J. Stewart
10b49fd845 Add DejaGnu package (#3518) 2017-03-23 14:35:38 -05:00
Adam J. Stewart
4ecfc39e1e Add Expect package (#3517) 
* Add Expect package

* Ignore patches during flake8 tests for package.py files

* Remove controversial changes
 2017-03-23 14:35:11 -05:00
Adam J. Stewart
ace890af49 Only configure requested lammps features (#3526) 
* Only configure requested lammps features

* Run configure from root and make from src
 2017-03-23 12:28:17 -05:00
Adam J. Stewart
4e8a59a062 Add patch to fix xcb-proto make check (#3520) 2017-03-22 16:17:01 -05:00
Howard Pritchard
7c82db07ac Open MPI: add new packages (#3519) 
there were various updated packages, both for the 2.x, 2.0.x,
and 1.10.x release branches of Open MPI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
(cherry picked from commit 3b671935783fc3af76dc642a54461c2f02ab8ebf)
 2017-03-22 16:16:32 -05:00
Jeffrey Salmond
f225741d07 configure vtk with external hdf5 and netcdf packages (#3504) 
* configure vtk with external hdf5 and netcdf packages

* remove ~mpi constraints from hdf5 and netcdf
 2017-03-22 14:53:05 -05:00
Erik Schnetter
7e7045e0ca llvm: Install utilities into libexec (#3516) 2017-03-22 09:01:10 -07:00
Jimmy Tang
31e28f9662 Update googletest (#3514) 2017-03-22 06:57:20 -05:00
Gregory Lee
606c5fbc5f patch readline to fix ipython seg fault (#3512) 2017-03-21 16:24:13 -07:00
Adam J. Stewart
07397e8ef7 Convert gettext to AutotoolsPackage (#3510) 2017-03-21 17:40:45 -05:00
Adam J. Stewart
657110f9d7 Convert isl to AutotoolsPackage (#3507) 2017-03-21 12:11:03 -05:00
Adam J. Stewart
ed9dec2259 Add recommended patches to mpfr package (#3506) 2017-03-21 11:25:14 -05:00
Kim Serradell
3923bdca90 Replacing failing git clone by valid url (#3505) 
* Replacing failing git clone by valid url

* Moving to previous version package (0.163)

* Removing automake and autoconf dependencies and adding url_list to pick up newer versions

* Corrected typo

* Reorder versions and removed libtool
 2017-03-21 10:50:34 -05:00
健美猫
babeb32c6d Add package openfst. (#3324) 2017-03-21 09:53:58 -05:00
Erik Schnetter
75c6c9f1ee llvm: Don’t copy “prefix/bin” into “prefix” during install (#3460) 2017-03-20 20:46:29 -05:00
Adam J. Stewart
777acb4c03 Fix: setuptools is a runtime dependency for pudb (#3502) 2017-03-20 18:08:45 -05:00
Adam J. Stewart
d31bbe450b Add latest version of binutils (#3500) 2017-03-20 18:07:37 -05:00
Michael Kuhn
0be9cee984 Update leveldb to 1.20 (#3441) 2017-03-20 15:07:24 -05:00
Erik Schnetter
79d0e7a5d7 gasnet: Update to 1.28.2 (#3496) 2017-03-20 15:05:23 -05:00
Erik Schnetter
ae8380c4fb cereal: Update to 1.2.2 (#3499) 2017-03-20 15:05:02 -05:00
Erik Schnetter
91dd854694 jemalloc: Update to 4.5.0 (#3497) 2017-03-20 15:04:34 -05:00
Erik Schnetter
68a4706b1e py-yt: Update to 3.3.5 (#3498) 2017-03-20 15:04:17 -05:00
Erik Schnetter
22f3c9de84 fftw: Update to 3.3.6-pl1 (#3495) 2017-03-20 12:35:08 -07:00
健美猫
1655161ebb Add ffmpeg package. (#3470) 2017-03-19 10:12:34 -05:00
健美猫
fb248f17fb Substitue ftp:// with http:// (#3491) 2017-03-19 10:11:06 -05:00
健美猫
14c181e480 Add new version for intel package: 16.0.4 17.0.2 . (#3490) 2017-03-19 07:57:06 -05:00
Erik Schnetter
a0ab3c2523 hdf5: Clean up building self-tests (#3483) 
* hdf5: Clean up building self-tests

* hdf5: Clean up running self-tests
 2017-03-18 20:14:47 -05:00
Adam J. Stewart
4866b4592f Add missing dependencies to gawk (#3481) 
* Add missing dependencies to gawk

* Fix make check

* Add mawk packages and awk virtual dependency

* Use mawk instead of gawk to build ncurses

* Rearrange order of patches and dependencies
 2017-03-18 19:13:32 -05:00
Adam J. Stewart
9d0a3c6b05 Fix deptype of various dependencies on Python packages (#3486) 2017-03-18 15:20:16 -05:00
Javier
6b97f538cf Adding new packages: py-argparse and py-importlib (#3488) 2017-03-18 13:45:29 -05:00
Adam J. Stewart
773357e20f setuptools is a runtime dependency of virtualenv (#3485) 2017-03-17 16:25:48 -05:00
Erik Schnetter
a2235fed41 julia: Create cacert directory manually to ensure correct permissions (#3482) 2017-03-17 16:07:49 -05:00
Javier
b0d9088603 Adding new package: py-future (#3401) 
* Adding new package: py-future

* Commenting out deps needed when installing python@2.6
 2017-03-17 13:59:38 -05:00
Adam J. Stewart
5f13e40655 Add package for ESMF (#2831) 
* Add package for ESMF

* Apparently mvapich2 is supported?
 2017-03-17 09:21:25 -05:00
Adam J. Stewart
2c39f16d44 Add version constraints to VTK patch (#3357) 2017-03-17 09:19:44 -05:00
Erik Schnetter
19b3afebc9 hpx5: Convert to AutotoolsPackage, several updates (#3456) 
* hpx5: Convert to AutotoolsPackage, several updates

- convert to AutotoolsPackage
- add several variants
- add several dependencies
- add new version 4.0.0
- don’t set compiler flags explicitly

* hpx5: Don’t import os

* hpx5: Clean up configure arguments

* hpx5: Correct libffi configure declaration

Also add new variant “+instrumentation”.

* hpx5: Correct CUDA, MPI, OpenCL configuration

* hpx5: Use built-in libffi

Spack’s libffi installs its headers in a strange place, and hpx5 can’t pick them up.
 2017-03-17 09:11:02 -05:00
Erik Schnetter
e7bf8034b0 libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around (#3459) 
* libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around

Other packages that depend on libpciaccess can do so via a conditional dependency (via a variant); we don’t need a dummy package for Darwin any more.

* Disable libpciaccess dependency on non-Darwin platforms

* hwloc: Remove direct dependency on libpciaccess
 2017-03-17 09:09:09 -05:00
Michael Kuhn
1124bdc99e Add packages libbson and libmongoc (#3440) 2017-03-16 23:16:30 -07:00
Erik Schnetter
9c1885022e simulationio: New package (#3422) 
* simulationio: New package

* simulationio: Rename development version to “develop”

* simulationio: Try to make flake8 happy

* simulationio: Correct flake8 error

* simulationio: Extend Python

* simulationio: Remove unused imports
 2017-03-16 23:06:47 -07:00
Adam J. Stewart
386462c0cb Add latest version of NCO (#3469) 2017-03-16 21:39:41 -07:00
Brian Van Essen
3f17f761fe Py keras extension (#3468) 
* Added support for building Theano with GPU support.  Added a package
for the libgpuarry libary needed for Theano.

* Added dependency on py-pexpect package which ipython requires.
 2017-03-16 21:24:36 -07:00
Todd Gamblin
328b2142f5 Fix Qt4 build on Yosemite (10.11) (#3444) 2017-03-16 17:55:06 -07:00
Erik Schnetter
4f05fb4b3f gasnet: Convert to AutotoolsPackage, update (#3455) 
* gasnet: Convert to AutotoolsPackage, update

- convert to AutotoolsPackage
- add new version 1.28.0
- create variants for IB and MPI support

* gasnet: Don’t specify prefix explicitly

* gasnet: Add missing variant descriptions

* gasnet: Correct syntax error
 2017-03-16 18:12:25 -05:00
Adam J. Stewart
99ef28b5d2 Add latest version of lmod (#3467) 2017-03-16 12:50:30 -05:00
Adam J. Stewart
4c7a721341 Add latest version of git, convert to AutotoolsPackage (#3466) 2017-03-16 12:50:10 -05:00
Erik Schnetter
2eda08f192 julia: New variant +simd (#3458) 2017-03-16 11:49:37 -05:00
Erik Schnetter
83fe65e121 hwloc: Add missing dependencies (#3457) 
* hwloc: Add missing dependencies

- add several missing dependencies
- add variants for various features
- add new version 1.11.6

* hwloc: Add descriptions to variants
 2017-03-16 11:48:39 -05:00
Erik Schnetter
53ca628d8b qthreads: New version 1.12 (#3464) 2017-03-16 10:08:48 -05:00
Erik Schnetter
a609d22b95 pocl: Introduce virtual package “opencl” (#3461) 
OpenCL is a standard like MPI, with several versions and several implementations.
 2017-03-16 09:47:46 -05:00
Erik Schnetter
d6a7000aee py-numpy: Correct typos in comment (#3462) 2017-03-16 09:45:09 -05:00
Erik Schnetter
19a90ccc19 py-scipy: New version 0.19.0 (#3463) 2017-03-16 09:39:26 -05:00
Javier
9e1e3a203a Adding new package: py-jpype (#3402) 
* Adding new package: py-jpype

* Moving jdk dependency
 2017-03-16 06:37:09 -05:00
Adam J. Stewart
4518ff0150 Add latest version of lua (#3454) 2017-03-15 21:28:56 -05:00
Adam J. Stewart
a40ccc24d6 Add latest version of pcre (#3453) 2017-03-15 21:28:29 -05:00
Adam J. Stewart
72890f4840 Add latest version of readline (#3452) 2017-03-15 20:36:24 -05:00
Adam J. Stewart
caf209bdd7 Add latest version of libiconv (#3451) 2017-03-15 20:08:01 -05:00
Gregory Lee
d0060bc318 added parallel studio composer edition 2017.2 (#3450) 2017-03-15 18:51:18 -05:00
Adam J. Stewart
7be728d551 Add latest version of libsigsegv (#3449) 2017-03-15 18:00:17 -05:00
Adam J. Stewart
9f1af5913b Add latest version of cURL (#3447) 2017-03-15 16:01:10 -05:00
Adam J. Stewart
41114c3e76 Add latest version of Intel Parallel Studio (#3445) 2017-03-15 13:46:48 -05:00
健美猫
9af7bef10b Add version 4.0 for foam-extend. (#3442) 2017-03-15 13:02:36 -05:00
Adam J. Stewart
dca4d2b15e Consistent docs and usage of env mod methods (#3351) 2017-03-14 22:26:44 -07:00
Adam J. Stewart
64bd7adefa Fix vim ~gui behavior (#3432) 2017-03-14 07:45:17 -07:00
Adam J. Stewart
5430d45db1 Add latest version of openpyxl and missing dependencies (#3431) 2017-03-14 07:44:46 -07:00
Adam J. Stewart
b203058891 Fix zlib %pgi build (#3436) 2017-03-14 07:43:54 -07:00
Erik Schnetter
415c9398d2 ncurses: Use gawk as awk (#3425) 2017-03-14 07:43:02 -07:00
Erik Schnetter
9121599145 New package pocl (#3413) 
* New package pocl

* pocl: Update dependencies, add self-test

* pocl: Don't require LLVM shared libraries

LLVM build fails with shared libraries.

* Add patch

* Update

* Update

* Make build and install work; install test still fails

* Split pocl into pocl proper and pocl-test

* Add debug output

* pocl: Update to 0.14-rc

* pocl: Correct flake8 error

* pocl: Heed code review recommendations

* pocl: Add newline at end of file

* pocl: Correct flake8 error

I don’t want to use an even longer line by putting the whole variant declaration onto a single line, nor do I think that having an overlong line and adding `# noqa` at the end is more readable than splitting a string over three lines.

* pocl: Correct dependency type for libtool
 2017-03-12 12:52:18 -05:00
Denis Davydov
0b948da74c gnuplot: fixed broken package and add variants (#3185) 
* gnuplot: fix conflict in header via a simple patch; add variants

* gtkplus: fix missing dependency

* wx: fix build on macOS; switch to AutotoolsPackage

* gnuplot: add missing dependencies

* wx: put back parallel build
 2017-03-12 09:37:26 -05:00
Erik Schnetter
d8f1446265 julia: New version 0.5.1 (#3418) 
* julia: New version 0.5.1

* julia: Define url on a single line
 2017-03-11 21:04:44 -06:00
Erik Schnetter
9a14597493 autoconf: Correct m4 dependency declaration (#3415) 
* autoconf: Correct m4 dependency declaration

Closes #3406.

* autoconf: Correct m4 dependency type

* autoconf: Update comment
 2017-03-11 21:04:18 -06:00
Erik Schnetter
02db630985 hwloc: Disable OpenCL (#2854) 
* hwloc: Disable OpenCL

* hwloc: Convert `install` to `configure_args`
 2017-03-11 20:59:06 -06:00
Erik Schnetter
41a3957540 libxsmm: Add header-only variant (#3419) 
* libxsmm: Add header-only variant

* libxsmm: Implement requestes from code review

* libxsmm: Correct error in previous simplification

* libxsmm: Raise error if `header-only` variant is not supported by version

* libxsmm: Correct flake8 errors
 2017-03-11 16:00:47 -06:00
Erik Schnetter
18ac76b320 bison: Declare m4 dependency correctly (#3424) 
* bison: Declare m4 dependency correctly

* bison: Declare m4 as run-time dependency
 2017-03-11 15:58:57 -06:00
Erik Schnetter
23d4a60639 funhpc: New package (#3421) 
* funhpc: New package

* funhpc: Rename development version to “develop”

* funhpc: Try to make flake8 happy

* funhpc: Correct flake8 error
 2017-03-11 15:58:09 -06:00
Erik Schnetter
7e3eaba899 hdf5-blosc: Update compiler selection in self-test (#3417) 2017-03-11 12:50:54 -06:00
Erik Schnetter
093ffdfa45 cuda: Allow using unknown compilers (#3416) 
* cuda: Allow using unknown compilers

* cuda: Correct flake8 error
 2017-03-11 12:42:02 -06:00
Erik Schnetter
b30637e1ce py-yt: New version 3.3.4 (#3420) 2017-03-11 12:39:33 -06:00
Erik Schnetter
48640cf2fa binutils: Add gettext dependency (#3423) 2017-03-11 12:38:51 -06:00
Elsa Gonsiorowski
eef2021d91 pdsh basic package (#3408) 
* added basic pdsh package

* need link to actual archive file
 2017-03-11 09:12:26 -06:00
Todd Gamblin
e3101808ae Make multimethods work with inheritance. (#3411) 
Previously, this would fail with a NoSuchMethodError:

    class Package(object):
        # this is the default implementation
        def some_method(self):
            ...

    class Foo(Package):
        @when('platform=cray')
        def some_method(self):
            ...

        @when('platform=linux')
        def some_method(self):
            ...

This fixes the implementation of `@when` so that the superclass method
will be invoked when no subclass method matches.

Adds tests to ensure this works, as well.
 2017-03-11 05:48:36 -08:00
Mario Melara
15f80ed15c Add paths to PKG_CONFIG_PATH to find cray .pc file (#3378) 
* Add paths to PKG_CONFIG_PATH to find cray .pc file

Adds two paths: /usr/lib64/pkgconfig and /usr/local/lib64/pkgconfig.

cray pkg-config looks at two different paths which are not included
in PKG_CONFIG_PATH environment variable. This PR addresses #3167.

* Flake8 fixes

* flake8 fix again
 2017-03-10 16:29:20 -08:00
Javier
68f5b9adf8 Adding new package: py-lxml (#3403) 
* Adding new package: py-lxml

* Adding missing version
 2017-03-10 13:18:17 -06:00
Javier
a1e8644f63 Adding new package: py-elasticsearch (#3398) 
* Adding new package: py-elasticsearch

* Adding missing dependency
 2017-03-10 12:48:41 -06:00
Javier
0c9ddeafe4 Adding new package: py-keras (#3400) 
* Adding new package: py-keras (and dependencies)

* Fixing dependencies
 2017-03-10 12:48:22 -06:00
Jon Rood
6066526492 Confining CPPFLAGS=-P to only happen for GCC. (#3404) 2017-03-10 12:48:03 -06:00
Javier
22d7f9da40 Adding new package: py-py4j (#3390) 
* Adding new package: py-py4j

* Adding missing depedency
 2017-03-10 07:30:28 -06:00
Javier
a7f35b3db6 Adding new package: py-joblib (#3399) 2017-03-10 07:30:01 -06:00