Commit graph

4285 commits

Author SHA1 Message Date
Pramod S Kumbhar
832791a2bb Improve scorep package with different compilers and mpi providers (#5386)
* Add --with-mpi=spec['mpi'].name at configure step to avoid error when finding 2 MPI implementations

* Improve scorep package with different compilers and mpi providers
2017-09-18 13:35:42 -07:00
Milton Woods
2f269c3919 mesa: merge multiple branches into one (#5170)
Merge work from multiple contributors on the mesa package. This
includes the following changes and decisions:

* Added in mesa +hwrender support

* make +swrender the default selection since this represents a very
  common usage case (ie, cluster usage)

* leave ~llvm as the default, since inadvertently building this package
  could take a very long time.  May need to revisit this assumption in
  the future since the performance difference can be quite substantial.

* build libGLESv1+2 and libGL for all variants

* avoid dependence on dri/libdrm when ~hwrender

* disable gallium drivers if none are requested
2017-09-18 11:10:54 -07:00
Todd Gamblin
eb0ea7697a Fix log error parsing bug introduced in c830eda0e (#5387)
- '\b' in regular expression needs to be in a raw string (r'\b')
- Regression test that would've caught this was unintentionally disabled

- This fixes the string and the test
2017-09-17 15:31:32 -07:00
Denis Davydov
2d22a88a96 tbb: add 2018 (#5359) 2017-09-17 11:32:19 -07:00
Howard Pritchard
707b773aa2 Open MPI: add Open MPI 3.0.0 (#5360)
Open MPI 3.0.0 is released!  Add to spack.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-09-16 13:14:24 -07:00
Denis Davydov
7cec47aacd trilinos: update md5 for 12.10.1 (#5362) 2017-09-16 13:05:17 -07:00
Axel Huebl
847b24c94c New Pcakage: numactl (#5371)
Adds the numactl tools and libnuma.
2017-09-16 13:00:32 -07:00
ynanyam
5bb3538541 Feature/methycode (#5374)
* methylcode: added package

* pyfasta: added package

* py-bsddb3: added package

* py-bsddb3: added package

* Update package.py

* Update package.py

* Update package.py

* removed fixme comments

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py
2017-09-16 12:58:04 -07:00
Pramod S Kumbhar
d25b159dc3 Cntk: fixed dependency on protobuf fixes #5266 (#5267)
As protobuf has been converted to CMakePackage, it doesn't have a 'shared' variant anymore.
2017-09-16 10:24:40 +02:00
Audrey Thoma
9326925d45 augustus: url fix (#5311) 2017-09-16 10:20:42 +02:00
Denis Davydov
05b309a487 add Intel 2018 libraries (#5354) 2017-09-16 10:10:08 +02:00
zenln
1ce6097651 Bioawk: added new package (#5375) 2017-09-16 09:14:57 +02:00
Christoph Junghans
fc237792b2 gromacs: added 2016.4 (#5376) 2017-09-16 09:12:02 +02:00
Pramod S Kumbhar
54d0cef5c4 Update hpctoolkit and externals to latest release 2017-09-15 12:58:33 -07:00
healther
393e355c39 add new version to package py-pybind11 2017-09-15 10:13:47 -07:00
Michael Kuhn
cba1ddff4a ncl: Fix buffer overflow in ymake-filter (#5357)
Fixes a problem in ymake-filter: The line buffer is currently hardcoded to be
2048 bytes large but some Makefiles contain lines longer than that. This
caused the Makefiles to sometimes not be generated, consequently failing parts
of the build.
2017-09-15 08:43:42 -05:00
Pramod S Kumbhar
abc0c65d03 Fix checksum of Intel TBB package (#5349) 2017-09-14 22:46:01 -07:00
Robert Pavel
ead1982ede Added Support for NOX Package to Trilinos Spackage (#5366)
Added support for building NOX package to Trilinis Spackage
2017-09-14 17:28:55 -06:00
Axel Huebl
78894645eb ADIOS: Fix Build (Autotools) (#5363)
This fixes the build of the ADIOS package.
The `with_or_without` interface of the Autotools builds
seems to have changed, this fixes it.
2017-09-14 19:08:03 +02:00
Axel Huebl
3548e134f7 libsodium: update URLs (#5355)
* libsodium: update URLs

updates the URLs for libsodium releases.
Fixes broken builds (404).

* libsodium: add new version
2017-09-14 08:16:54 -05:00
Louis Vernon
ea081f06f0 Added missing dependencies to nauty package (#5348)
* Added missing help2man dependency to nauty

* Add type=build

* Added gmp dependency to nauty package
2017-09-13 20:16:16 -06:00
Axel Huebl
c1975c7601 Boost: 1.65.1 (#5330)
Add sha of the latest boost bugfix release.
http://www.boost.org/users/history/version_1_65_1.html

Besides other fixed issues, it adds compatebility for the upcoming
CUDA 9 release.
2017-09-13 22:45:28 +02:00
Denis Davydov
5c24370512 openblas: add ilp64 option (#5289) 2017-09-12 08:40:28 +02:00
Michael Kuhn
b413f37b3e Update libbson and libmongoc to 1.7.0 (#5294)
This also introduces the ssl, snappy and zlib variants for libmongoc.
2017-09-11 22:02:48 -07:00
Christoph Junghans
3ffb6d09d9 parsplice: initial commit (#5314) 2017-09-11 21:59:15 -07:00
Denis Davydov
c9e46a2913 dealii: explicitly specify bzip2 libs (#5337)
* dealii: explicitly specify bzip2 libs
* bzip2: add libs() property
2017-09-11 20:47:05 -07:00
Massimiliano Culpo
32117c22de 'with_or_without' accepts bool variants
Fixes #4112

This commit extends the support of the AutotoolsPackage methods
`with_or_without` and `enable_or_disable` to bool-valued variants. It
also defines for those functions a convenience short-cut if the
activation parameter is the prefix of a spec (like in
`--with-{pkg}={prefix}`).

This commit also includes:

* Updates to viennarna and adios accordingly: they have been modified to
  use `enable_or_disable` and `with_or_without`
* Improved docstrings in `autotools.py`. Raise `KeyError` if name is
  not a variant.
2017-09-11 16:20:49 -07:00
Christoph Junghans
f502de4725 added votca-1.4.1 modules (#5276) 2017-09-11 13:28:53 -07:00
Denis Davydov
8dd7fa03ea elemental: fix broken Config.cmake (#5331) 2017-09-11 13:27:20 -07:00
Christoph Junghans
947cd8e3c0 berkeley-db: initial commit (#5303)
* berkeley-db: initial commit
* berkeley-db: added more versions
2017-09-11 13:25:36 -07:00
Massimiliano Culpo
50eea5cb13 Added 'ldc' compiler for D language based on LLVM (#5279) 2017-09-11 21:54:38 +02:00
Stephen McDowell
be2be8c70e fix armadillo macro expansions (#5268)
* fix armadillo macro expansions

- most compilers `#define linux 1`
    - armadillo does raw pasting of include directories in code
    - this means macro expansion of `linux-x86_64` -> `1-x86_64`
- new version, previous download url seems broken
- lib64 instead of lib?
    - needs verification, was required for intel, works for others

* flake8: two spaces is modules, one for classes

* add some explanation of how the patch works

* use p1 patch file with -U0 to prepend undef linux

* armadillo v8.100.1
2017-09-10 16:04:02 -10:00
Eloy Gil
7d5f12be70 Missing opencv dependencies (#5285)
There are some opencv dependencies missing such as "core" that are mandatory in order to complete the caffe build.
2017-09-10 14:38:11 -10:00
healther
1d3a8e034d add package py-line-profiler (#5291) 2017-09-10 14:35:17 -10:00
Pramod S Kumbhar
c077052664 Change glog from Autotools to CMakePackage (#5323) 2017-09-10 13:22:47 -10:00
Christoph Junghans
effba3c95e lammps: version bump, switch to cmake (#5313) 2017-09-10 13:21:38 -10:00
Christoph Junghans
b60e7e14b9 latte: initial commit (#5315) 2017-09-10 13:19:50 -10:00
Pramod S Kumbhar
d5f1144798 Fix Autotools build error due to missing m4 and MPICC/MPICXX (#5319) 2017-09-10 13:18:55 -10:00
Pramod S Kumbhar
ba5b17d28a Chnage IOR to AutotoolsPackage; remove hard-coded mpicc path (#5318) 2017-09-10 13:17:54 -10:00
Pramod S Kumbhar
3bb243e8e2 Improve PDToolkit support for different compilers (#5322)
* Improve PDToolkit support for different compilers

PDT dependency of TAU profiler doesn't use CC, CXX eb variables and needs command line arguments for compiler identification. If we don't pass compiler id then it uses gcc and result in link time errors while building TAU.  This patch fixes it; tested with PGI and Intel compilers.
2017-09-10 13:16:49 -10:00
Pramod S Kumbhar
f5f51118b8 Fix matplotlib build issue with intel compiler (#5321) 2017-09-10 13:15:12 -10:00
Pramod S Kumbhar
b14b02f875 Improve caffe dependency detection with extra CMake flags (#5328)
* Improve caffe dependency detection with extra CMake flags
* lmdb and leveldb fix
2017-09-10 13:14:22 -10:00
Pramod S Kumbhar
e0fa335df0 Paraview requires CMake version 3.3 or higher (#5317) 2017-09-10 10:09:05 +02:00
Pramod S Kumbhar
6ce009a72a Libgpuarray requires CMake 3.0 or higher (#5326) 2017-09-10 10:06:13 +02:00
Pramod S Kumbhar
156dedac6b Fix caffe build issue with python 3 (#5324) 2017-09-09 21:28:39 -10:00
Matthew Scott Krafczyk
51828dd982 Bootstrap environment-modules
Renames the existing bootstrap command to 'clone'. Repurposes
'spack bootstrap' to install packages that are useful to the
operation of Spack (for now this is just environment-modules).
For bash and ksh users running setup-env.sh, if a Spack-installed
instance of environment-modules is detected and environment modules
and dotkit are not externally available, Spack will define the 
'module' command in the user's shell to use the environment-modules
built by Spack.
2017-09-08 10:15:06 -07:00
Audrey Thoma
2e0fc39173 mlhka: new package (#5231)
* mlhka: new package
2017-09-07 07:34:34 -10:00
Michael Kuhn
84ae7872d3 Update copyright notices for 2017 (#5295) 2017-09-06 17:44:16 -10:00
Denis Davydov
01a9a048ad elemental: fix hardcode libgfortran, use develop and explicitly specify MPI compilers (#5263) 2017-09-06 12:04:32 +02:00
Massimiliano Culpo
d1a5857a03 Added support for querying by tags (#4786)
* Added support to query packages by tags.
    - The querying commands `spack list`, `spack find` and `spack info` have
      been modified to support querying by tags. Tests have been added to
      check that the feature is working correctly under what should be the
      most frequent use cases.

* Refactored Repo class to make insertion of new file caches easier.
    - Added the class FastPackageChecker. This class is a Mapping from
      package names to stat info, that gets memoized for faster access.

    - Extracted the creation of a ProviderIndex to its own factory function.

* Added a cache file for tags.

    - Following what was done for providers, a TagIndex class has been added.
      This class can serialize and deserialize objects from json. Repo and
      RepoPath have a new method 'packages_with_tags', that uses the TagIndex
      to compute a list of package names that have all the tags passed as
      arguments.

      On Ubuntu 14.04 the effect if the cache reduces the time for spack list
      from ~3sec. to ~0.3sec. after the cache has been built.

* Fixed colorization of `spack info`
2017-09-05 15:44:42 -10:00