Commit graph

13809 commits

Author SHA1 Message Date
a-saitoh-fj
4ef3fb9434
Fixed for merging patches for Fujitsu compiler in version 0.3.13 (#20539) 2020-12-24 17:05:01 -06:00
a-saitoh-fj
9066982168
Update to the latest version (1.6.0) (#20540) 2020-12-24 17:04:04 -06:00
kuramoto-fj
7d267e1440
mptensor: Add new package (#20542) 2020-12-24 16:59:02 -06:00
Tomoyasu Nojiri
b1a6e583c0
babelflow: Add spec (#20544) 2020-12-24 16:54:24 -06:00
Alexander Baumgarten
91e106ae7c
libgff: new package at version 2.0.0 (#20233)
* libgff: new package at version 2.0.0

* Removed default cmake function, fixed flake8 error

* Fixed errors
2020-12-24 16:48:01 -06:00
Michael Kuhn
2d1c4e4b5d
sqlite: add 3.34.0 (#20354) 2020-12-24 16:47:17 -06:00
Dr. Christian Tacke
741a0b498a
py-lxml: Add Version 4.6.1 (#20361)
Also switch homepage to https.
2020-12-24 16:46:43 -06:00
Paul R. C. Kent
763fc989c5
New versions: py-sphinxcontrib-bibtex 2.2.0 and py-pybtex-docutils 0.2.2 (#20438)
* Add v2.0.0

* Add 0.2.2

* Improve packages

* No trailing
2020-12-24 16:46:28 -06:00
Brian Van Essen
6c00ebab16
Add lbann cmake flags (#20452)
* Adding support for the CMake flags in LBANN that are missing.

* Added new flag to OpenCV dependency and removed negative variants
since OpenCV no longer turns on everything by default.  Removed CMake
flags in LBANN that have been deprecated.

* Removed type='build' flags from dependencies so that they get linked
into a environment's view.

* Removed type='build' flags from dependencies so that they get linked
into a environment's view.  Fixed DiHydrogen variant to enable
DistConv feature, renamed to +distconv from +legacy.  Added conflicts
line to indicated that DistConv and ROCm don't work with +half
support.

* Fixed Flake8 and cleaned up ordering of variants.

* Flake8

* Backed out changes to not mark and cmake and ninja as build
dependencies, which was introduced to make sure that they appear in
a spack environment.

* Backed out changes to not mark doc related packages as build
dependencies, which was introduced to make sure that they appear
in a spack environment.

* Fixed how recipe communicates the intent to build and run tests to the
package CMake.
2020-12-24 16:46:12 -06:00
Joshua S Brown
ee0ec12603
Add py-ez-setup package file (#20520)
* Add py-ez-setup package file

* Cleanup formatting

* Cleanup formatting take 2
2020-12-24 16:43:15 -06:00
tilne
805cc61036
Update ParallelCluster to v2.10.1 (#20524)
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-12-24 16:42:53 -06:00
zorun
f2c523db1e
[gcc] Make ISL optional by adding a +graphite variant (#20531)
Fixes: #20515

Co-authored-by: Baptiste Jonglez <git@bitsofnetworks.org>
2020-12-24 20:17:35 +01:00
zorun
4ef33a4cd7
[gcc] Explicitly disable libs when they are not required (#20532)
This is to make sure that the build system doesn't pick up a library that
would happen to be available.

Co-authored-by: Baptiste Jonglez <git@bitsofnetworks.org>
2020-12-24 19:39:46 +01:00
Todd Gamblin
1571d6240b style: ensure that all packages pass spack style -a
- fix trailing whitespace and other issues uncovered by better flake8
  checking.

- fix extra whitespace printed by `spack style` command
2020-12-23 16:17:54 -08:00
Robert Cohn
0bb18d8a38
Add Intel oneAPI packages (#20411)
This creates a set of packages which all use the same script to install
components of Intel oneAPI. This includes:

* An inheritable IntelOneApiPackage which knows how to invoke the
  installation script based on which components are requested
* For components which include headers/libraries, an inheritable
  IntelOneApiLibraryPackage is provided to locate them
* Individual packages for DAL, DNN, TBB, etc.
* A package for the Intel oneAPI compilers (icx/ifx). This also includes
  icc/ifortran but these are not currently detected in this PR
2020-12-23 15:39:40 -08:00
Howard Pritchard
88a608a26c
papi: patch fortran tests for Cray FTN compiler (#20339)
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2020-12-23 09:31:19 -06:00
Harsh Bhatia
a93f6ca619
Add patch to fix bazel build on power9 (#20512)
* fix bazel on power9

* small fix in tensorflow package

* removed import not needed anymore
2020-12-22 16:50:03 -06:00
Ben Bergen
97aa455f14
Patch meson.build llvm config strategy (#20451)
This patch logic resovles a linking issue with ncurses in the mesa
package. This appears to be a recurring problem that was identified in
the mesa gitlab issues here:
https://gitlab.freedesktop.org/mesa/mesa/-/issues/2843

Using `_llvm_method = 'auto'` is broken. This patch replaces that with
`_llvm_method = 'config-tool'`, which is a hack, but makes it possible
to build.

I have commented on the closed issue (2843), referencing the original
author of the bug, and one of the mesa developers, so perhaps they will
fix the problem.
2020-12-22 10:39:56 -07:00
Paul
32f0bf9057
Corrected Go dependent build environment. (#18493)
* Dependencies of Go will now correctly set the GOPATH for the
  appropriate spec to avoid using the user's default path.
* Bumped version to latest releases(1.15.6 & 1.14.13).
2020-12-21 19:47:53 -06:00
Vicente Bolea
a9925036df
ParaView: add new ParaView-5.9.0-RC3 release (#20500)
Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2020-12-21 19:46:01 -06:00
Todd Gamblin
1d8aa34f52 clingo: prefer master branch
Most people installing `clingo` with Spack are going to be doing it to
use the new concretizer, and that requires the `master` branch.

- [x] make `master` the default so we don't have to keep telling people
  to install `clingo@master`. We'll update the preferred version when
  there's a new release.
2020-12-21 16:02:09 -08:00
downloadico
4654a8a557
New package: PMERGE (#20390) 2020-12-21 12:55:22 -08:00
Karen C. Tsai
4a6269319e
upstream dependencies changes (#20493)
* update dependencies and cmake options

* add blank line
2020-12-21 12:20:49 -07:00
amd-toolchain-support
e73a65db9a Added support for AOCC compiler 2020-12-21 00:27:37 -08:00
Dr. Christian Tacke
5df6418b64
geant4-vmc: Add version 5-3, switch to https (#20379) 2020-12-20 10:47:53 -06:00
Jan Ciesko
517413c125
Add spack test support for Qthreads (#20437) 2020-12-18 13:38:40 -08:00
eugeneswalker
2314a20fbd
slepc: set --with-arpack-dir correctly (#20463) 2020-12-18 11:03:26 -08:00
Chuck Atkins
8755d577c9
mesa: drop use of shared variant (#20453)
Mesa no longer supports building static libraries so it doesn't
even make sense to add the variant.
2020-12-18 09:58:51 -06:00
eugeneswalker
13e4d9ee3a
py-greenlet: add version 0.4.17 (#20457)
* py-greenlet: add version 0.4.17

* py-greenlet depends on python for build, link, and run
2020-12-17 19:38:43 -08:00
Chuck Atkins
c5b4a667d3
meson: Add cmake runtime dependency (#20449) 2020-12-17 16:56:39 -05:00
Harmen Stoppels
a879c875dd
New package: cray-mpich (#20076)
Cray's version of MPICH uses a different versioning system than
MPICH, so it has been split into its own package. It is an
external-only package (always provided by the system, never
installed by Spack).
2020-12-17 13:13:21 -08:00
eugeneswalker
105ee757bc
superlu depends on tcsh for build (#20381) 2020-12-17 12:26:18 -08:00
Dr. Christian Tacke
e858bb2961
cmake: Add Version 3.19.2 (#20448) 2020-12-17 20:25:51 +01:00
manifest
888c456ece
add py-gemini (#16950)
* py-gemini +

* dep py-setuptools +

* deps grabix+

* py-gemini dep version fix

* grabix compiler fix

* Update package.py

Typo correction
2020-12-17 12:17:01 -06:00
takanori-ihara
a0843e9634
biobambam2: new package at v2.0.177 (#20392) 2020-12-17 17:47:01 +01:00
Adam J. Stewart
120e5cdcc4
pangolin: add new package (#20388) 2020-12-17 17:45:26 +01:00
Ryan S. Elliott
12378db0d8
kim-api: added v2.2.1 (#20382) 2020-12-17 17:44:33 +01:00
ketsubouchi
4677674667
suite-sparse: add flags for Fujitsu compilers (#20393) 2020-12-17 17:40:01 +01:00
Adam J. Stewart
860a945de6
OpenCV: add versions up to v4.5.0, variants (#20378) 2020-12-17 17:06:28 +01:00
Michael Kuhn
c79647d66b
flexi: new package (#20313) 2020-12-17 17:02:49 +01:00
Michael Kuhn
8f8c9b34a9
openblas: added v0.3.13 (#20357) 2020-12-17 17:01:49 +01:00
Ryan Mast
3d7fe28966
mbedtls: added v2.16.9 (#20422) 2020-12-17 16:55:20 +01:00
Adam J. Stewart
b86743c879
DBoW2: add new package (#20387) 2020-12-17 16:54:34 +01:00
Hadrien G
e61fb96e96
acts: added v3.00.0 (#20402) 2020-12-17 14:27:06 +01:00
Massimiliano Culpo
076ea2fe4c
arm: added new package (#18019)
The package is at the moment not installable, just detectable.
2020-12-17 10:02:36 +01:00
Massimiliano Culpo
045afc8788
xlc, xlf: added new packages (#18154) 2020-12-17 10:00:06 +01:00
Ryan Mast
9692017d59
help2man: update to 1.47.16 (#20397) 2020-12-17 09:07:56 +01:00
Ryan Mast
e0e6a0199e
sundials: add versions up to 5.6.1 (#20436) 2020-12-16 18:26:47 -08:00
Ben Cowan
ed740fb654
Added PyAMG package. (#20414) 2020-12-16 17:58:41 -08:00
Ryan Mast
2bc5516a95
cli11: add new package (#20398) 2020-12-16 15:26:37 -08:00
Adam J. Stewart
826cd07cf7
PythonPackage: add import module smoke tests (#20023) 2020-12-16 15:15:03 -08:00
Ryan Mast
cd496a20e9
ninja: update to version 1.10.2 (#20399) 2020-12-16 14:49:12 -08:00
arjun-raj-kuppala
620fbf6e90
AMD ROCm release for mivisionx Bump up versions - 3.9.0 and 3.10.0 (#20401) 2020-12-16 16:46:23 -06:00
Adam J. Stewart
4d09dc4c61
dlib: add new package (#20386) 2020-12-16 14:28:39 -08:00
Thomas Gruber
2bb9116219
pylikwid: New recipe (#20408) 2020-12-16 14:17:37 -08:00
Ryan Mast
046e3fcae3
automake: update to 1.16.3 (#20421) 2020-12-16 14:12:04 -08:00
Zhiyi Wu
8539fcfd70
Update the plumed 2.6.2 (#20425) 2020-12-16 14:02:41 -08:00
Desmond Orton
3ff600b1cf
Version update to 5.3.0 (#20433) 2020-12-16 13:49:57 -08:00
David Beckingsale
dcc67dad15
Add RAJA v0.13.0 (#20431) 2020-12-16 13:45:57 -08:00
Ethan Stam
86f006ffa9
Match master version instead of develop for PARAVIEW_VTK_DIR (#20427) 2020-12-16 12:29:35 -06:00
Danny Taller
d505ef8217
loop fuser option (#20417) 2020-12-16 10:44:43 +01:00
thelfer
c52d9dc445
Added TFEL v3.4 and MGIS v1.2 (#20234) 2020-12-16 10:40:34 +01:00
Ben Cowan
c02625eb53
Kluge to get the gfortran linker to work correctly for SciPy on Big Sur. (#20367)
* Kluge to get the gfortran linker to work correctly on Big Sur.

* Fixed formatting error; stetting the other.

* Removed spaces.

* Added comment, mainly to re-trigger Spack CI.
2020-12-15 14:25:23 -06:00
Dr. Christian Tacke
a7a5fd3fa3
fmt: added v7.1.3, update URLs (#20404) 2020-12-15 18:15:25 +01:00
Ryan Mast
168f07181d
bison: added versions up to v3.7.4 (#20400) 2020-12-15 18:13:33 +01:00
AMD Toolchain Support
7dc56a293f
gromacs: removed mentions of non-existing variants (#20405) 2020-12-15 17:44:59 +01:00
Massimiliano Culpo
7501d9d150
dealii, piranha, trilinos: remove mentions of non-existing variants (#20406) 2020-12-15 17:44:20 +01:00
Mark W. Krentel
d6bfc104bf
comgr: disable hip compile test from /opt/rocm (#20330) 2020-12-15 13:55:45 +01:00
Massimiliano Culpo
e7f4c2b49e
package sanity: ensure all variant defaults are allowed values (#20373) 2020-12-15 10:22:15 +01:00
Tamara Dahlgren
c6c1af4969
Bugfix: Correct the git URL (#20391) 2020-12-14 19:11:06 -08:00
Vicente Bolea
e3fa8d9f52
ParaView: add new ParaView-5.9.0-RC2 release (#20222)
* ParaView: add new ParaView-5.9.0-RC2 release

Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>

* Update var/spack/repos/builtin/packages/paraview/package.py

Indeed, I misunderstood the previous review. This looks good to me too.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-12-14 15:23:50 -06:00
Ryan Mast
86ae63b648
bazel: add latest versions up to 3.7.1 (#20355) 2020-12-14 12:27:38 -06:00
Tim Haines
7e93240b97
boost: added v1.75.0 (#20366) 2020-12-14 19:20:33 +01:00
Andre Sailer
d1bebb4d05
mysql: fixed variant mismatch with boost (#20370)
Require boost at cxxstd=14 if cxxstd=14 is selected, not 11
2020-12-14 14:31:57 +01:00
Thomas Gruber
8fd4719291
likwid: Add variant for Nvidia GPU profiling feature (#20337) 2020-12-14 10:20:07 +01:00
Axel Huebl
f0b7be8263
WarpX: PSATD on (#20342)
Enabling PSATD is not mutually exclusive with other runtime options
anymore, so we can always compile with support for it to ease
usability.
2020-12-14 10:15:50 +01:00
Brian Van Essen
b7aea9f3b1
Propagate cuda_arch downstream from LBANN, Hydrogen and DiHydrogen (#20345) 2020-12-14 10:14:49 +01:00
Ryan Mast
fc8c07df2f
gradle: updated versions up to v6.7.1 (#20358) 2020-12-14 10:03:00 +01:00
takanori-ihara
5c43be7694
libmaus2: new package at v2.0.767 (#20300) 2020-12-14 09:29:58 +01:00
Tomoyasu Nojiri
12c8be73b3
wps: fix build for aarch64 (#20363) 2020-12-14 09:18:19 +01:00
yellowhat
0924b20984
fio: added v3.25 (#20302) 2020-12-11 15:16:28 +01:00
vvolkl
e6f2fa34d0
dd4hep: added v01-15, edm4hep variant and updated url_for_version (#20304) 2020-12-11 15:15:41 +01:00
Levi Baber
d55dfe07d9
albert: added v4.0a (#20306) 2020-12-11 14:35:50 +01:00
Dr. Christian Tacke
3be8a5e007
root: added v6.22.06 (#20309) 2020-12-11 14:23:46 +01:00
vvolkl
047bf4d902
prmon: added v2.1.1 (#20318) 2020-12-11 11:27:28 +01:00
Desmond Orton
ea7d14af10
py-dadi: added new package at v2020-12-02 (#20314) 2020-12-11 10:26:01 +01:00
Ryan Marcellino
9721e0fdec
openjdk: bump version 1.8 and 11 (#20315) 2020-12-11 10:24:25 +01:00
QuellynSnead
dcfd22cca9
caliper: add a variant to enable Fortran support (#20332) 2020-12-11 10:10:21 +01:00
manifest
955a5c0fc8
py-angel: new package at v3.0 (#20331) 2020-12-11 10:02:18 +01:00
Adam J. Stewart
207f71246a
py-torchvision: add v0.8.2 (#20328) 2020-12-11 09:53:12 +01:00
Adam J. Stewart
28def448ff
py-torch: add v1.7.1 (#20327) 2020-12-11 09:52:51 +01:00
Tomoyasu Nojiri
6672278e68
py-pyarrow: fix build for aarch64 (#20335) 2020-12-11 09:37:36 +01:00
Robert Pavel
1728b0ea25
flux: added v0.20.0 and v0.21.0 (#20322)
Fixed hard tab in flux-sched edit and unbound hwloc in flux-core after
testing to better support modern MPIs in spack environments

Verified that flux-core@0.17 is when hwloc@2: became viable
2020-12-11 09:08:02 +01:00
Dr. Christian Tacke
6f6855d437
curl: added v7.64.0, v7.74.0 (#20321) 2020-12-11 09:06:54 +01:00
Tamara Dahlgren
59628cd9e8
Tests: enable re-use of post-install tests in smoke tests (#20298) 2020-12-10 10:35:27 -08:00
Dr. Christian Tacke
6c26203f95
hepmc: Add 2.06.11, switch to https (#20286) 2020-12-10 11:40:02 -05:00
Itaru Kitayama
9bcf99358e
Add a new NEST version, 2.20.0. (#20316)
* Add a new NEST version, 2.20.0.

* Scalasca requires Score-P as a 'run' dependency.

Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2020-12-10 06:43:16 -06:00
arjun-raj-kuppala
3d568d1553
AMD ROCm Release: Bump up versions(3.9.0 and 3.10.0) for miopen-hip (#20296) 2020-12-10 11:55:07 +01:00
Christoph Junghans
e117e087eb
votca-*: add v1.6.3 (#20308) 2020-12-09 15:06:54 -07:00
Filippo Spiga
5b1739da72
Adding NVIDIA HPC SDK 20.11 (#20287) 2020-12-09 09:53:05 -08:00