Commit graph

7847 commits

Author SHA1 Message Date
Harsh Bhatia
81f7238743 cgal: add version 4.13 2019-04-18 19:31:08 -07:00
Nichols A. Romero
eb7c79720d QMCPACK CMake fix (#11212)
* cflags and cxxflags from packages.yaml need to be passed into QMCPACK's CMake explictly for now.

* You need the ifcore library from the Intel compler to be manually linked in when you linked against a LAPACK provider that is not MKL.
2019-04-18 20:00:24 +02:00
Daniel Topa
c7725e9ff8 Add Open MPI v3.0.4 (#11221)
tarball posted 2019-04-15
https://www.open-mpi.org/software/ompi/v3.0/

dantopa@cn209:openmpi-3.0.4-5ienfvwpcxky3nz5jt3rygxzxzltkwm4 $ cd lib/

dantopa@cn209:lib $ ls -alh
total 27M
...
lrwxrwxrwx 1 dantopa dantopa   16 Apr 17 10:01 libmpi.so -> libmpi.so.40.0.5

confirmation builds Darwin (LANL):

x86_64
-- linux-centos7-x86_64 / gcc@4.8.5 -----------------------------
5ienfvw    openmpi@3.0.4%gcc
bkkhvej        ^hwloc@1.11.11%gcc
5chyfxo            ^libpciaccess@0.13.5%gcc
bcnjbc3            ^libxml2@2.9.8%gcc
tt2hkol            ^numactl@2.0.12%gcc
64vg6e4        ^zlib@1.2.11%gcc

ARM
-- linux-rhel7-aarch64 / gcc@4.8.5 ------------------------------
cq2y6b3    openmpi@3.0.4%gcc
7gqvelc        ^hwloc@1.11.11%gcc
6a4he35            ^libpciaccess@0.13.5%gcc
6a5uzd6            ^libxml2@2.9.8%gcc
m5neuus            ^numactl@2.0.12%gcc
67s2oqn        ^zlib@1.2.11%gcc

Power9
-- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------
otirvfn    openmpi@3.0.4%gcc
r6cylpu        ^hwloc@1.11.11%gcc
uzm3xdv            ^libpciaccess@0.13.5%gcc
trik6hj            ^libxml2@2.9.8%gcc
pmgndwh            ^numactl@2.0.12%gcc
4v3ticy        ^zlib@1.2.11%gcc

2019-04-18

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2019-04-18 12:33:26 -05:00
Federico Ficarelli
e64ee7e1be Prevent building llvm@8: with an incompatilble gcc (#11220) 2019-04-18 16:58:41 +02:00
Satish Balay
4571a96a43
xsdk: add/update maintainers to xsdk packages (#11146)
pumi
  slepc
  plasma
  magma
  trilinos
  alquimia
  pflotran
  strumpack
  tasmanian
  amrex
  hypre
  omega-h
  superlu-dist
2019-04-18 08:20:22 -05:00
Stephen Herbein
1dc3744d2c new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
Greg Becker
f242f5f8a9 Features: Improve Spec format strings (#10556)
* Update spec format to simpler syntax, maintain backwards compatibility
* Switch to new spec.format method throughout internals
* update package files for new format strings
* documentation and minor code cleanup. removed nonsensical variant sigils
2019-04-17 18:21:40 -07:00
Veselin Dobrev
49334f006d [WIP] CEED 2.0 (#10903)
* Initial commit for v2.0 of the CEED software suite.

* Update Nek packages and gslib

* Help spack concretize the hypre version for ceed-2.0.

* Fix nekcem install error

* Add support for gfortran v8 in nek5000 and nekcem.

* Split Nek5000 into Nek5000 and Nektools

* Get Nektools to build fine in Theta

* Fix travis failure: remove unused 'import numbers' from nek5000.

* Check for gfortran if it is wrapped

* Tweak the detection of gfortran in nek5000.

* Fix Nek packages to add -std=legacy when FC=gcc

* spack install ceed~petsc works fine on Theta

* Fix flake8 errors

* Fix more flake8 tests

* Fix an import issue

* Tweak the suite-sparse package to avoid interaction with existing system
installations of suite-sparse.

* petsc: update superlu-dist dependency

* Updates in the packages: occa, libceed, and ceed.

* In the libceed package, explicitly tell nvcc which host compiler to use.

* Fix python formatting.

* Simplify the test for gfortran in nek* packages.

* ceed: 2.0 uses petsc@3.11.0

* hpgmg-0.4; use from ceed@2.0.0

* Update the hypre dependency for ceed 2.0.

* Disable the superlu-dist dependency (through hypre) when using a
+quickbuild of ceed 2.0.

* petsc-3.11.0: add xlf fix

* nekcem: has a build dependency on Python 2.7+

* hpgmg: better setting of compiler options and use python for configure

* libceed: use v0.4 tag

* libceed: fix 0.4 release oops (pkgconfig version)

* Add a patch for magma-2.5.0 that brings it up the current 'master'.

* In the mfem package, install the examples, miniapps, and data under
$prefix/share/mfem.

* In the magma package, apply a patch to v2.5.0 that disables
magma_sparse - for testing purposes.

* In the magma package, link the 'magma' library with the
'nvToolsExt' library.

* In the magma package, update the 'magma-2.5.0.patch' with the latest
commits from the magma source repository. Also, remove the library
'nvToolsExt' from the 'magma-2.5.0-cmake.patch' - now it is not
needed.

* In the magma package, disable OpenMP when using v2.5.0 with the
IBM XL compiler.

 Please enter the commit message for your changes. Lines starting

* In the mfem package, add version for the 'laghos-v2.0' tag; also,
prefix the versions `laghos-v*` with their respective development
version numbers -- this way they are properly ordered within spack
relative to the official numbered versions.

* petsc: add version 3.11.1 (#11179)


(cherry picked from commit 1eab6e3c86)

* ceed-2.0: use petsc-3.11.1

* this-is-so-dumb.f -> empty.f
2019-04-17 17:37:41 -07:00
Elsa Gonsiorowski, PhD
a26aec520b mpifileutils v0.9.1 (#11216)
* mpifileutils v0.9.1

* mpifileutils v0.9.1 for realz
2019-04-17 18:11:14 -05:00
Michael Kuhn
b61dd57fdc sublime-text: Miscellaneous improvements (#11154)
- Add 3.2.1
- Reformat versions to include proper upstream version tags
- Add gtk dependency
- Add prefix to PATH so sublime_text can be found
2019-04-17 13:44:34 -07:00
Oliver Breitwieser
f276b3ffa0 ruby: Install certificate for +openssl only (#11184)
If specifying ~openssl, the post-install step will still try to install
the non-existent certificate, leading to an IOError.
2019-04-17 13:03:58 -05:00
Christoph Junghans
c628ca99cf gromacs: added 2019 patch releases (#11211) 2019-04-17 12:48:06 -05:00
Satish Balay
4731041f88
strumpack@3.1.1: add patch for Intel-19 build failure on cori (#11204)
Ref: https://github.com/spack/spack/issues/11202
2019-04-17 12:10:05 -05:00
Justin S
01ada1a3de astral: add 5.6.1 (#11195) 2019-04-17 09:32:50 -05:00
sknigh
e372464611 Add llvm 8.0.0 (#11197) 2019-04-17 09:31:42 -05:00
Michael Kuhn
ea2a85dbd3 lz4: Add 1.9.0 (#11207) 2019-04-17 09:30:23 -05:00
Michael Kuhn
3028f5674c zstd: Add 1.4.0 (#11208) 2019-04-17 09:29:52 -05:00
sknigh
308805cd54 Added rust 1.34.0 (#11200) 2019-04-16 18:32:11 -05:00
sknigh
a287ad6edd Added openmpi 3.1.4 (#11201)
* Added openmpi 3.1.4

* fix suffix comment
2019-04-16 18:31:54 -05:00
Matthias Mayr
e07cf4d661 New package: CLN library (#11167) 2019-04-16 16:03:51 -07:00
Frédéric Simonis
2ef7287a3b precice package: add versions and dependencies (#11176)
* Add versions 1.4.0, 1.3.0, and 1.2.0
* Add dependencies and update constraints (e.g. version 1.4.0 of
  precice requires a later version of boost)
* Add maintainers
2019-04-16 12:38:08 -07:00
Nichols A. Romero
9a79a2345d QMCPACK package: Remove Spack MKL hack for older version (#11127)
A Spack hack for MKL usage was needed in QMCPACK prior to version 3.5
when non-Intel compilers were used. This Spack hack could have
undesirable side-effects and led to ugly code that was extra work to
maintain. For older versions of QMCPACK, we throw a conflict if you
want to use Intel MKL with the other compilers commonly found on x86.

Note that there is no impact to version of QMCPACK since 3.5.
2019-04-16 12:04:40 -07:00
Satish Balay
c25d162b3c
superlu-dist: fix issue with adding system blas/lapack - when MKL is explicitly specified (#11187)
Version 6 added dependency on LAPACK - so additional -DTPL_LAPACK_LIBRARIES option is required

Ref: https://github.com/xiaoyeli/superlu_dist/issues/36
Ref: https://github.com/spack/spack/issues/10173
2019-04-16 08:52:48 -05:00
Jordan Ogas
a49de9eb09 add charliecloud 0.9.9 (#11190) 2019-04-15 17:59:10 -05:00
Matthias Diener
dd97cf9315 cmake: add version 3.14.2 (#11192) 2019-04-15 17:17:24 -05:00
Denis Davydov
06a17ef052 pixman: fix patch (#11173) 2019-04-15 14:49:02 +02:00
Denis Davydov
0341e19540 boost: add 1.70.0 (#11183) 2019-04-15 09:59:04 +02:00
Oliver Breitwieser
dadbd723a3 verilator: Fix FlexLexer.h not found (#11185)
Similar to #10956 flex needs to be a link-dependency for verilator in
order for FlexLexer.h to be found during install.
2019-04-15 09:56:07 +02:00
Satish Balay
5b5e00aaa9 petsc4py: add verson 3.11.0 (#11186)
Also added maintainers
2019-04-15 09:54:40 +02:00
Mark C. Miller
1ae7477d20 Update FASTMath metapackage (#11171)
* Limit to FASTMath-only packages
* Replace boxlib with amrex

As requested by @asalmgren
2019-04-12 16:54:19 -05:00
Satish Balay
832a1ddbaa
petsc: add fftw variant (#11178) 2019-04-12 09:46:23 -05:00
Satish Balay
1eab6e3c86
petsc: add version 3.11.1 (#11179) 2019-04-12 09:45:43 -05:00
Owen Solberg
227f9c9026 py-deeptools: adding release 3.2.1 sha256 sum (#11174) 2019-04-12 09:45:04 +02:00
Satish Balay
6b09781936
xsdk@develop: enable amrex@develop+sundials (#11169) 2019-04-11 12:16:23 -05:00
Cody Balos
0d0358733d amrex: add sundials variant (#11147) 2019-04-11 10:43:11 -05:00
brietzke
d0e281e201 libxsmm package: add variant to build generator executables (#11114) 2019-04-10 16:34:38 -07:00
clellsolomon
7ec12c59ab fzf package: change mirror and add vim plugin (#10920)
This commit edits the Makefile to use github.com mirrors rather than the
default mirrors of the dependency packages installed by GO.
2019-04-10 16:23:37 -07:00
Chuck Atkins
f1bdaa11d4 New Packages: ecp-io-sdk and ecp-viz-sdk (#11073) 2019-04-10 16:18:05 -07:00
Eric Martin
8f1ebfc73c py-requests: Add missing dependencies for versions 2.16.0 and up (#10996) 2019-04-10 15:38:28 -07:00
Patrick Gartung
a5315f3878
Fix bug when system perl is used. (#11034)
* Fix bug when system perl is used.

If system perl is being used through packages.yaml there cannot be dependent modules.
The  setup_dependent_packages function should not do anything in that case.
2019-04-10 08:44:27 -05:00
Denis Davydov
1e9748a3c8 dealii: fix build with tbb from intel parallel studio (#11138) 2019-04-10 14:51:38 +02:00
Denis Davydov
b2611c8086 suite-sparse: fix tbb patching (#11155) 2019-04-10 09:21:54 +02:00
Michael Kuhn
1ac576923f libfabric: Add 1.7.1 (#11141) 2019-04-09 18:38:15 -05:00
Matthias Diener
687a7db73f wget: add version 1.20.3 (#11148) 2019-04-09 18:37:04 -05:00
Denis Davydov
1f1ea2c859 intel: consolidate libs() in the base class (#11143)
* intel: consolidate libs() in the base class

* white space

* flake8
2019-04-09 13:54:21 -07:00
Denis Davydov
82455a30d0 openmpi: add 4.0.1 (#11126)
* openmpi: add 4.0.1

* openmpi: enable-mpi1-compatibility for 4.0.1 and above

* remove preferred

* make 3.1.3 preferred
2019-04-09 21:41:14 +02:00
Satish Balay
a9bf3bdd6a
xsdk@develop: enable hypre shared (even on OSX) and superlu-dist variant (#11131) 2019-04-09 08:42:44 -05:00
Owen Solberg
c6a7d0db03 cdhit - add new release 4.8.1 checksum (#11130) 2019-04-09 10:33:07 +02:00
Satish Balay
6e78730a97 mumps: add version 5.1.2 (#11132)
Add patch for gfortran-8 runtime errors
2019-04-09 10:28:41 +02:00
Patrick Gartung
aac3799d2c
Unset SPACK_INCLUDE_DIRS so the compiler wrapper does not prepend any -I flags. The assumption is that cmake will set the correct include flags. (#11129) 2019-04-08 14:30:22 -05:00