Commit graph

12285 commits

Author SHA1 Message Date
g-mathias
d222551185
namd: latest version 2.14 (#18167)
* upgrade to version 2.14; added target architecture optimization

* renamed devel-> (adamjstuart); keep 2.14bx versions

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-21 09:55:53 -05:00
Adam J. Stewart
07fc495c94
py-pandas: added v1.1.1 (#18206) 2020-08-21 08:49:32 +02:00
Ryan Mast
3a1334bc6a
helics: Add version 2.6.0 (#18208)
* helics: Add version 2.6.0

* Remove bms version from HELICS package
2020-08-20 22:24:46 -05:00
Jordan Ogas
1666db60d0
charliecloud: add 0.18 (#18200)
* add 0.18, remove older versions

* update url

* fix typo
2020-08-20 20:16:34 -05:00
Michael Kuhn
fc3b4657ce
sqlite: Add 3.33.0 (#18145) 2020-08-20 17:17:02 -05:00
g-mathias
880ff1d795
new dakota version 6.12; included boost versions limit; changed default url (#18168)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-20 17:14:40 -05:00
vvolkl
6b6f6db431
[gaudi] sadly, the cmake fixes are postponed to next version (#18171) 2020-08-20 17:11:45 -05:00
vvolkl
cd06100001
[podio] new version, cxxstd 17 now mandatory (#18191) 2020-08-20 17:06:52 -05:00
Harmen Stoppels
ebe5a5652c
Add rocSPARSE, rocSOLVER, hipSPARSE and hipBLAS (#18108) 2020-08-20 14:55:02 -05:00
Massimiliano Culpo
573ce3fe81
gcc: fixed compilation on OpenSUSE (#18190)
Set location for dependencies specifying explicitly both
the include and lib path. This permits to handle cases where
the libraries are installed in lib64 instead of lib.

fixes #17556
fixes #10842
closes #18150
2020-08-20 17:42:18 +02:00
Marc Mengel
d5c3b876e0
detatch binutils usage from bootstrap in gcc variants (#18116) 2020-08-20 17:06:22 +02:00
vvolkl
286c3d6cbc
[lcio] set up run time paths (#18109)
* [lcio] set up run time paths

* [lcio] update runtime

* [lcio] flake8
2020-08-20 09:43:59 -05:00
Isaac Whitfield
b9adbac5c6
libimobiledevice: new package (#10819) 2020-08-20 11:22:04 +02:00
ketsubouchi
8a02ef4d51
bwa: patch Makefile to permit the use of compilers other than GCC (#18189) 2020-08-20 09:55:05 +02:00
Tim Haines
c786eb46bb
dyninst: use elfutils for all versions (#18063) 2020-08-20 08:36:02 +02:00
Elizabeth Fischer
306f3a1232
Make finding of NetCDF and HDF5 more explicit. (#18166)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-08-20 08:34:53 +02:00
darmac
1650824ef5
Add new package: phoenix (#18143) 2020-08-19 20:33:37 -05:00
darmac
0187884591
qemu: add pkgconfig to avoid build error (#17929) 2020-08-19 20:32:47 -05:00
darmac
d9722e2730
nfs-ganesha: fix compile error on debian (#18102)
* nfs-ganesha: fix compile error on debian

* add type for py-stsci-distutils
2020-08-19 20:32:02 -05:00
darmac
bc2ff81a64
Add new package: presto (#18142) 2020-08-19 20:31:10 -05:00
darmac
472a32fb41
brigand: fix build error (#18173) 2020-08-19 20:30:33 -05:00
eugeneswalker
b5db5cf259
prepend ${NINJA_ROOT}/misc to PYTHONPATH in run environment (#18182) 2020-08-19 15:06:08 -07:00
Filippo Spiga
8e8071ffb6
[WIP] Adding Quantum ESPRESSO v6.6 (#18091)
* Adding v6.6 (latest stable)

* There is no '-' in Quantum ESPRESSO

Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
2020-08-19 11:10:54 -05:00
Pieter Ghysels
2945babdad
STRUMPACK: added v4.0.0 (#18159)
- add cuda variant, enabled by default, but conflicting with
  strumpack@:3.9.999
- add zfp variant, enabled by default, but conflicting with
  strumpack@:3.9.999
- update minimum CMake version to 3.11
- for version 4.0.0:, do not use mpi wrappers. v4.0.0 uses CMake
  MPI targets
- for version 4.0.0, add dependency on butterflypack@1.2.0:
- remove versions 3.1.0 and older
- make parmetis variant True by default
- add TODO for slate variant (spack package not ready yet)
2020-08-19 10:15:02 +02:00
Kai Germaschewski
3cbd4c8dcf
adios: relax libtool restriction (#18056)
While I believe there must have been a reason to restrict libtool to <=
2.4.2, adios compiles just fine with libtool 2.4.6 for me.

In fact, without this change, I'm getting this error:

libtool: Version mismatch error.  This is libtool 2.4.6, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.6

This doesn't make much sense, since spack did build libtool@2.4.2 as a
dependency, and was supposedly trying to use it. My guess is that on
this system (NERSC's cori) the system libtool in /usr/bin, which is
2.4.6 somehow got picked up partially.
2020-08-19 08:49:54 +02:00
Michael Kuhn
fd0d79ecc5
meson: added v0.55.1 (#18146) 2020-08-19 08:32:13 +02:00
Luke Dalessandro
76f3d84a1b
libfabric: added v1.10.0, v1.10.1 and v1.11.0. (#18161) 2020-08-19 08:26:22 +02:00
Robert Pavel
bc34ab4701
lua: specified better the dependency on ncurses (needs +termlib) (#18163)
Semi-recently the lua spackage was updated to explicitly add libtinfow
to the lua build line. Ncurses provides this but only when the +termlib
variant is enabled
2020-08-19 08:23:56 +02:00
Massimiliano Culpo
bef560636d
intel: added external detection capabilities (#17991) 2020-08-19 08:20:57 +02:00
ketsubouchi
71748a3b7a
moab: delete -march=native from generated files (#18137)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-08-19 07:40:40 +02:00
Christoph Junghans
c7096eb537
ninja: add v1.10.1 (#18160) 2020-08-18 14:51:55 -06:00
Greg Becker
08dd826891
emacs: add 27.1 and conflict 26.3 on macos catalina (#18157)
* emacs: add version 27.1

* emacs: 26.3 does not work on macos catalina
2020-08-18 11:26:09 -07:00
Adam J. Stewart
00e9e1b3c7
Java: add spack external find support (#18006) 2020-08-18 20:17:08 +02:00
Michael Kuhn
319d160ed1
glib: added v2.64.4 (#18144) 2020-08-18 15:15:19 +02:00
Adam J. Stewart
17d96b615a
py-accimage: add new package (#18122) 2020-08-18 12:10:18 +02:00
Toyohisa Kameyama
3210d6b64e
unibilium: added v2.0.0 (#18132) 2020-08-18 12:03:06 +02:00
Pieter Ghysels
9b65bdeca8
ButterflyPACK: added v1.2.0 (#18133) 2020-08-18 12:02:16 +02:00
Hadrien G
d466e9224f
acts: added v0.31 (#18138) 2020-08-18 11:55:45 +02:00
Harmen Stoppels
25d27a38de
SpFFT: added v0.9.13 (#18139) 2020-08-18 11:53:27 +02:00
ketsubouchi
71b7b353d8
ocaml: fix building with Fujitsu compilers (#17918) 2020-08-18 11:49:09 +02:00
darmac
060731a824
ape: fix build error and update version (#17952)
* ape: fix build error and update version

* ape: fix 2.3.0 & 2.3.1

* ape: only refine libxc version constraintion

* ape: fix flake8 error
2020-08-17 21:22:53 -05:00
Toyohisa Kameyama
264958fc18
lua-jit: New pacjage. (#18099) 2020-08-17 21:17:08 -05:00
Toyohisa Kameyama
ad8418fbbf
libluv: New package. (#18100) 2020-08-17 21:15:11 -05:00
Toyohisa Kameyama
b3535d909e
libuc: Add version 1.38.1. (#18104) 2020-08-17 21:07:43 -05:00
Harmen Stoppels
f582ebbaa0
Add master and develop for spfft (#18105) 2020-08-17 21:05:26 -05:00
Hadrien G
97ca824487
Add acts v0.30 (#18106) 2020-08-17 21:04:17 -05:00
Paul
12c4b8a73e
Find external package for git-lfs. (#18107) 2020-08-17 21:02:41 -05:00
Levi Baber
6127a6faf6
canu: new version (#18112) 2020-08-17 20:58:50 -05:00
Marc Mengel
fdddbc9ae7
libsm: new version, depends_on libuuid (#18117)
* libsm: new version, depends_on libuuid

* blank lines

Co-authored-by: Marc Mengel <mengel@fnal.gov>
2020-08-17 20:52:26 -05:00
Toyohisa Kameyama
4f624727ef
lua-lpeg: Add version 1.0.2-1. (#18128) 2020-08-17 20:51:29 -05:00
Rao Garimella
da1135cd19
Fix typo in CMake options (#18125)
* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-08-17 20:41:04 -05:00
Marc Mengel
3da40a5c61
dependency fix for python3 (#18118)
* dependency fix for python3

* version cleanup

Co-authored-by: Marc Mengel <mengel@fnal.gov>
2020-08-17 16:51:17 -05:00
Nithin Senthil Kumar
9c3b4e4d28
Changes to url port and a bug fix in mvapich2x package (#18096)
Co-authored-by: nithintsk <nithintsk@github.com>
2020-08-17 15:33:26 -05:00
Adam J. Stewart
cc06181ef9
ALSA-lib only works on Linux (#18075) 2020-08-17 15:22:25 -05:00
vvolkl
525a9f02ca
xrootd: added v5.0.0, updated dependency on root (#18101) 2020-08-17 20:02:45 +02:00
Rao Garimella
1498d076c3
New package Tangram (#17944)
* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-08-17 13:00:43 -05:00
Adam J. Stewart
9350ecf046
py-torchvision: fix linking to -lavcodec (#18093) 2020-08-17 11:24:19 -05:00
vvolkl
022586b11d
[delphes] align env var with lcg release (#18080) 2020-08-17 09:20:41 -05:00
t-nojiri
a19ac05d3e
openmolcas: fix build on aarch64. (#17923) 2020-08-17 11:54:48 +02:00
vvolkl
b51e48732c
pythia8: added environment variable (#18081) 2020-08-17 11:51:16 +02:00
Adam J. Stewart
8a8d36d828
hdf+external-xdr does not build on macOS (#18085) 2020-08-17 10:54:30 +02:00
Wouter Deconinck
7618b4e25c
cppzmq: added versions up to v4.6.0 (#18087)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-17 10:32:38 +02:00
Harmen Stoppels
207eadc1b2
Add rocBLAS (#18069)
* Add rocBLAS

* Add rocBLAS support to SIRIUS
2020-08-16 19:42:43 -05:00
darmac
f56b521bb5
Add new package: hudi (#18041) 2020-08-16 17:36:03 -05:00
darmac
a9116ac95c
Add new package: slf4j (#18042) 2020-08-16 17:35:12 -05:00
darmac
3e7e07f2fd
Add new package: h2database (#18046) 2020-08-16 17:33:09 -05:00
darmac
4428f59ad5
kaldi:refine dependency openfst (#18047) 2020-08-16 17:32:23 -05:00
darmac
34b7d99bec
Add new package: mahout (#18048) 2020-08-16 17:30:03 -05:00
darmac
06a0fe9d94
util-linux: remove libintl link (#18065) 2020-08-16 17:28:38 -05:00
darmac
bef02e9d89
nfs-utils: fix compile error on ubuntu (#18066) 2020-08-16 17:27:47 -05:00
Tomoki, Karatsu
af9a3dc69a
fenics: split 'parmetis' dependency definition. (#18067) 2020-08-16 17:25:16 -05:00
Harmen Stoppels
fd82cff737
Make spfft build with rocm (#18068) 2020-08-16 17:23:04 -05:00
Tom Payerle
0ffe64dee0
libssh: add gssapi variant and include krb5 as a dependency accordingly (#18070)
See #18033

libssh seemed to detect and link to system krb5 libraries if found
to provide gssapi support, causing issues/system dependencies/etc.

We add a boolean variant gssapi

If +gssapi, the spack krb5 package is added as a dependency.
If ~gssapi, the Cmake flags are adjusted to not use gssapi so that
does not link to any krb5 package.
2020-08-16 17:16:44 -05:00
vvolkl
b89c794806
[xrootd] new version and updated dependency (#18079) 2020-08-16 17:14:08 -05:00
vvolkl
2916ebe743
[dd4hep] align runtime env with lcg release (#18082) 2020-08-16 17:11:28 -05:00
Filippo Spiga
0788a69fa8
Adding osu-micro-benchmarks version 5.6.3 (#18090)
Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
2020-08-16 17:03:54 -05:00
Mark W. Krentel
6e1f9b65e4
xz: add +pic variant (#18092)
xz-utils already builds a shared library.  The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
2020-08-16 17:02:43 -05:00
Auriane R
93221f8bf9
Add boost 1.74.0 package (#18088) 2020-08-16 16:13:55 -05:00
iarspider
6fdbdaf5b6
New packages: madgraph, syscalc, collier, gosam-contrib (#17601)
* Add Collier and SysCalc recipes

* Remove extra syscalc version

* Build collier with -j1 for @:1.2.4

* Add recipe for gosam-contrib

* Update gosam-contrib recipe with 'provides'

* Madgraph recipe, first version

* Finalize madgraph recipe + flake8

* Make py2 version of madgraph default; fix hash for syscalc; fix patch

* Handle virtual packages (#3)

* Update package.py

* Update packages.yaml

* Remove virtual packages - pt. 1

* Remove virtual packages - pt. 2

* Changes from review - pt. 1

* Changes from code review - pt. 2

* Update var/spack/repos/builtin/packages/collier/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/madgraph5amc/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add hash for version 2.7.2 (available in our private mirror)

* Fixes for 2.7.3 family

* Patches for 2.7.3{.py3,}{.atlas,}

* Fix hash of syscalc

* Hack to fix concretization (2.7.3 matches 2.7.3.py3)

* Add conflict statement (reported to devs)

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Delete madgraph5amc-2.7.2.atlas.patch

* Delete madgraph5amc-2.7.2.patch

* Update package.py

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-16 12:07:14 -05:00
Nithin Senthil Kumar
6ececa6976
New packages Mvapich2x and Mvapich2-GDR (#17883)
* Adding new packages Mvapich2x and Mvapich2-GDR which can be installed only via binary mirrors

* Added docstring descriptions to both packages

* Removed variant wrapper for cuda dependencies

* Fixed multiple flake8 errors

* Updated APIs to pass unit tests

* Updated APIs for MVAPICH2-X package and fixed flake8 warnings for MVAPICH2-GDR

* Changed url back to single line

* Removed extra parantesis around URL string

Co-authored-by: nithintsk <nithintsk@github.com>
2020-08-16 08:56:22 -05:00
vvolkl
46fb456b54
[root] add dataframe cmake option (#17962)
* [root] add dataframe cmake option

@chissg @HadrienG2  @drbenmorgan


This has been a separate cmake option starting v6-19 I believe: 31292b9082
It should default to true -- not sure why, but this recipe sets it to off.

I could add a variant too, but since it has become an integral part of root and doesn't introduce extra dependencies, I'd propose to just set it to true like I do here.

* Update package.py
2020-08-15 10:13:11 -05:00
Chuck Atkins
a6a5708c44
pugixml: add version 1.10, add option for shared libs (#18072) 2020-08-14 17:45:30 -07:00
Adam J. Stewart
9ab8521a1c
Python: add spack external find support (#16684) 2020-08-14 16:08:42 +02:00
Adam J. Stewart
512ef506a7
pkgconfig: add spack external find support (#16690) 2020-08-14 16:07:17 +02:00
Adam J. Stewart
c18167d01f
Autoconf: add spack external find support (#16692) 2020-08-14 16:06:26 +02:00
Adam J. Stewart
73fe3ce158
M4: add spack external find support (#16693) 2020-08-14 16:05:30 +02:00
darmac
f901947f69
bmake: fix compilation error and added v20200710 (#17956) 2020-08-14 11:32:06 +02:00
Adam J. Stewart
2430ac5b7c
GDAL: add spack external find support (#18004) 2020-08-14 08:59:34 +02:00
Adam J. Stewart
c27e82f0ac
gmake: add spack external find support (#18009) 2020-08-14 08:58:22 +02:00
Levi Baber
5eea09d43d
nextflow: added v20.07.1 (#18058) 2020-08-14 08:53:16 +02:00
Adam J. Stewart
be046d7341
Bazel: add spack external find support (#18008) 2020-08-14 08:48:49 +02:00
Adam J. Stewart
84a16e62d6
OpenGL: add spack external find support (#18003) 2020-08-14 08:48:11 +02:00
Adam J. Stewart
70419c752d
GMT: add spack external find support (#18007) 2020-08-14 08:44:32 +02:00
Robert Blake
bcae9e354b
Adding external package support for tar. (#18002)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14 08:43:27 +02:00
Robert Blake
a9b1f22ba1
External package recognition for git. (#18010)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14 08:42:53 +02:00
Adam J. Stewart
a14648ffd0
external packages: redirect stderr too (#18037) 2020-08-14 08:40:58 +02:00
Greg Sjaardema
8ade93d09d
NETCDF-C: added v4.7.4 (#18051) 2020-08-14 08:25:41 +02:00
Greg Sjaardema
4f14d67537
SEACAS: added v2020-05-12 and v2020-08-13 (#18053) 2020-08-14 08:25:06 +02:00
Jed Brown
fe718afaa5
ceed: fix @3.0.0 dependency on hypre@2.18.2 (#17983)
Co-authored-by: Veselin Dobrev <dobrev1@llnl.gov>
2020-08-14 08:18:58 +02:00
Adam J. Stewart
2dad0e5825
Matplotlib: added v3.3.1 (#18061) 2020-08-14 08:01:37 +02:00