Commit graph

28806 commits

Author SHA1 Message Date
snehring
d0fdaf6d03
igv: changing to 'all platforms' version. Adding igvtools variant. (#30379) 2022-05-04 08:29:06 +02:00
Adam J. Stewart
b8ebaa0813
py-shapely: add v1.8.2 (#30466) 2022-05-04 07:43:52 +02:00
Massimiliano Culpo
5c7d6c6e10
Remove deprecated "--run-tests" option of "spack install" (#30461) 2022-05-04 07:43:29 +02:00
eugeneswalker
96f9a1d88b
boost: fix v1.78 build with oneapi (#30463) 2022-05-03 23:29:37 -06:00
Carlos Bederián
f5eb9fb501
autodock-vina: add versions up to v1.2.3, fixes (#30443)
* C++ package, use spack_cxx
* download from github, add 1.2.x versions
* remove patches already present in 1.1.2-boost-new release
* specify boost dependencies
2022-05-04 06:24:15 +02:00
Paul Ferrell
dd8f533e97
paraview: add LANL/TCE used variants for Paraview (#30336)
- Added +eyedomelighting
- Added +pagosa
- Added +fortran
- Added pandas dependency and min version
2022-05-04 06:18:35 +02:00
Glenn Johnson
bab41de538
ncl: constrain hdf5 dependency to version 1.10 (#29607) 2022-05-03 23:11:34 -05:00
Harsh Bhatia
17c1808ef7
new package: py-pytaridx (#30444)
* new package: pytaridx

* fixed copyright year

* Update git link

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* added type in python depends

* added pypi link

* Update package.py

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-03 23:10:49 -05:00
snehring
157ee3458f
ea-utils: new version, cleanup, and newer gcc compat (#30204) 2022-05-04 06:06:59 +02:00
dependabot[bot]
3ce8bff22e
build(deps): bump docker/setup-buildx-action from 1.6.0 to 1.7.0 (#30387)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1.6.0 to 1.7.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](94ab11c41e...f211e3e9de)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-05-04 06:04:38 +02:00
Ethan Stam
281165693a
ParaView: let paraview build its own verdict tpl (#30332) 2022-05-04 06:03:52 +02:00
eugeneswalker
f8653dfb9b
mesa@22: gallium-xlib -> xlib (#30465) 2022-05-04 05:53:09 +02:00
Frank Willmore
a6589daa87
Vacuumms 1.1.1 (#30458)
* adding updated package for vacuumms

* deprecating old version

* add link to DOI

* style: trailing whitespace

* Update var/spack/repos/builtin/packages/vacuumms/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-03 19:13:43 -06:00
Richard Berger
43a503c195
flcl: add new versions (#30363)
* flcl: add new versions

* Update var/spack/repos/builtin/packages/flcl/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/flcl/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-03 19:01:32 -06:00
Keita Iwabuchi
1eff83990b
Metall Package: add v0.20 (#30446)
* Metall package: add dependency to GCC for build test

* Package Metall: add v.017

* Package Metall: update the package file

* Update var/spack/repos/builtin/packages/metall/package.py

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>

* Metall package: add v0.18 and v0.19

* Metall Package: add v0.20

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-05-03 16:46:04 -07:00
Lucas Frérot
17e71a675a
tamaas: new package (#30449)
* tamaas: added new package

* tamaas: passing dependency prefixes to build

* tamaas: Python 3.7 dependency

* tamaas: compiler conflicts and correct ~python

* tamaas: no newline in docstring

* tamaas: correct python build dep. when ~python
2022-05-03 16:17:17 -07:00
Adam J. Stewart
872aa32a00
py-matplotlib: add v3.5.2 (#30459) 2022-05-03 17:06:04 -06:00
Ken Raffenetti
4c19410669
mpich: add datatype engine variant (#30257)
Starting with MPICH 3.4, we offer different datatype engine options
(dataloop or yaksa). The default is 'auto', which will choose based on
the device configuration. Starting with MPICH 4.0, building against an
external yaksa library is supported.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-03 22:12:19 +02:00
Massimiliano Culpo
a5e92893d3
Simplify fixture used to test spack info (#30456) 2022-05-03 09:39:00 -07:00
Chuck Atkins
bdef031d4e
opengl: Fix opengl concretization issues from missing versions (#30331) 2022-05-03 10:51:41 -05:00
asesidaa
a10f5656ab
Add detection for hpcx-mpi in esmf (#30280) 2022-05-03 17:45:04 +02:00
Olivier Cessenat
653ed78645
keepassxc: add v2.7.1 (#30450) 2022-05-03 16:54:04 +02:00
haralmha
bc7fc8f456
flatbuffers: add v2.0.0 (#30455) 2022-05-03 16:53:24 +02:00
Ken Raffenetti
55bbbe8657
yaksa: add ROCm variant (#30222) 2022-05-03 16:52:31 +02:00
Mosè Giordano
a6dcce4cf2
swiftsim: do not build with -Werror (#30454) 2022-05-03 07:50:23 -07:00
Seth R. Johnson
e301de98cb
Revert "qt: Fix the assimp dependency specification (#30435)" (#30451)
This reverts commit 4219b89faa.
2022-05-03 10:16:56 -04:00
Chris Richardson
6ecee4e6d5
Fix install of xsimd with xtensor (#30196) 2022-05-03 15:03:28 +02:00
Olivier Cessenat
2d89bc350c
htop: add v3.2.0 (#30452) 2022-05-03 06:38:14 -05:00
Sinan
14e5497758
postgresql: add libs property (#30392)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-03 09:24:59 +02:00
Brian Van Essen
4576fbe648
OpenCV and OpenBLAS: add external find support (#30240)
Added support for finding the OpenCV package via the find external
command. Included support for identifying variants based on available
shared libraries.

Added support to finding the OpenBLAS package via the find external
command.

Enabled packages to show that they can be discovered via the find
external command in the info message.

Updated the OpenCV and OpenBLAS packages to use the extensible search
mechanism for library extensions on multiple OS platforms.

Corrected how find externals works on Darwin for OpenCV and OpenBLAS
to accommodate that the version numbers are placed before the file
extension instead of after it, as on Linux.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-03 09:04:50 +02:00
Sinan
84611b5f29
package/gdal fix config issue with +pg for newer gdal (#30421)
* package/gdal fix config issue with +pg for newer gdal

* fix version logic

* improve style

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2022-05-02 22:06:42 -05:00
Harsh Bhatia
cbf0c3a8c4
update version of py-mock, py-msgpack, py-gridformats, py-pyrsistent (#30445)
* add v3.0.3 for py-mock

* added v0.6.0 and 0.6.1 for py-msgpack

* added v0.4.0 for py-gridformats

* added v0.16.0 for py-pyrsistent
2022-05-02 20:17:54 -06:00
Chuck Atkins
d6c1619b67
mesa: Add v22.0.2 (#30439)
This adds v22.0.2 which also drops swr support.
2022-05-02 20:13:47 -06:00
Michele Martone
d23d611f35
librsb: added v1.3.0.1 (#30425)
* librsb: added v1.2.0.10 (#26043)

* librsb: add v1.2.0.11/v1.3.0.0 (#28636)

* librsb: add v1.3.0.1 (#30424)

* unconflict clang

* address apparent style issues

given
 https://github.com/spack/spack/runs/6248126997?check_suite_focus=true
and its excerpt

  var/spack/repos/builtin/packages/librsb/package.py:27: [E265] block comment should start with '# '
  var/spack/repos/builtin/packages/librsb/package.py:52: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:53: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:53: [E501] line too long (89 > 88 characters)
  var/spack/repos/builtin/packages/librsb/package.py:54: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:55: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:56: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:57: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:59: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:60: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:62: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:63: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:64: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:66: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:68: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:70: [E211] whitespace before '('
  var/spack/repos/builtin/packages/librsb/package.py:71: [E211] whitespace before '('

let these changes flow in.

* +asan+native: mark as conflict; thanks @tldahlgren

* +asan conflict grouped with other conflicts

As suggested as good Spack style by @tldahlgren .
2022-05-02 16:41:43 -06:00
Weiqun Zhang
8ed8922af5
amrex: add v22.05 (#30441) 2022-05-02 15:17:48 -06:00
laestrada
01c17562f5
gchp: added version 13.4.0 (#30442) 2022-05-02 13:55:50 -07:00
dlkuehn
c97d931ea7
masurca: add version 4.0.9 (#30440)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-05-02 14:50:10 -06:00
Massimiliano Culpo
21bf0cf43c
Fix issue in CI with Git 2.35 (#30436) 2022-05-02 20:49:53 +00:00
Ken Raffenetti
e2c72e583f
spack ci: Fix typo in error message (#30438) 2022-05-02 20:33:54 +00:00
Chuck Atkins
4219b89faa
qt: Fix the assimp dependency specification (#30435) 2022-05-02 16:22:13 -04:00
Carlos Bederián
253b208537
mesa: add 21.3.8 (#30412) 2022-05-02 12:40:30 -04:00
Kyle Gerheiser
4509e96704
git-lfs: add build-tools tag (#30431)
Let Spack find external git-lfs by default. There seemed to be agreement to add git-lfs to the build tools in https://github.com/spack/spack/pull/29031.
2022-05-02 09:02:42 -06:00
Stephen Hudson
f0bb7c74a9
libEnsemble: add v0.9.0 (#30409) 2022-05-02 08:26:36 -06:00
Erik Schnetter
c93fd4c600
netlib-lapack: add v3.10.1 (#30198) 2022-05-02 16:11:37 +02:00
Hadrien G
76d9df2cf1
acts: add v18.0.0 (#30219)
- Keep long lists in alphabetical order for easier reading
- Add a placeholder for Exa.TrkX plugin since we're missing a dep on the
  Spack side
- Add support for the ONNX plugin since Spack now has an ONNX runtime
  package
- Use spack's pybind11 package now that we're given the option to do so
2022-05-02 16:02:04 +02:00
Valentin Volkl
d2f67ff7b9
lcio: fix possible issue with root's cxxstd (#30241) 2022-05-02 15:55:15 +02:00
Jean-Paul Pelteret
b5b62b0c82
ADOL-C: Add a patch to force Colpack detection to fail (#30413) 2022-05-02 15:52:38 +02:00
eugeneswalker
e691d6df64
binutils@2.38 %gcc: add -fPIC -fcommon -Wl,-z,notext (#30345) 2022-05-02 15:38:07 +02:00
Luc Berger
25206c86c4
kokkos-kernels: add v3.6.00 (#30316) 2022-05-02 15:31:44 +02:00
Xavier Delaruelle
144d7cd932
environment-modules: add v5.1.0 (#30419) 2022-05-02 08:57:19 +02:00