Commit graph

6151 commits

Author SHA1 Message Date
健美猞猁
80c1984e68 Bump miniconda to 4.5.4. (#8435) 2018-06-10 15:15:43 -05:00
toffer93
8a97aa4c51 py-projectq: Added new package and fixed its dependency py-pybind11 (#8378)
* py-pybind11: Additionally install python extensions e.g. run python setup

* py-projectq: Added new package for quantum computing

* py-projectq: corrected typos

* edited flake8 incompatibilities

* additional flake8 faults

* changes according to suggestions

* flake8 errors fixed

* typo and missing environment variable set

* py-pybind11:added setup_environemt

* py-projectq:changed version according to request

* flake8 correction

* py-pybind11:changed to setup_py and removed noop

* py-projectq:removed dependency and changed type of py-pytest dependency

* py-pybind11: flake8 error corrected

* py-projectq: Small error correction
2018-06-09 16:22:25 -05:00
Kelly (KT) Thompson
689e0cb24b Git's gitk needs TK's wish to be found in PATH (#8360)
* Git's gitk needs TK's wish to be found in PATH

* Add a _runtime_ dependency on `tk`
* Add an environment rule to add the path to TK's `wish` program to $PATH for
  the generated `git` modulefile.

* Make TclTk run environment an optional variant for git.

* Cleanup based on PR recommendations.
2018-06-09 16:16:35 -05:00
Chris Green
15c98fa57c compiler flags: add cxx98 standard support (#7601)
The following improvements are made to cxx standard support
(e.g. compiler.cxxNN_flag functions) in compilers:

* Add cxx98_flag property
* Add support for throwing an exception when a flag is not supported (previously
  if a flag was not supported the application was terminated with tty.die)
* The name of the flag associated with e.g. c++14 standard support changes for
  different compiler versions (e.g. c++1y vs c++14). This makes a few corrections
  on what flag to return for which version.
* Added tests to confirm that versions report expected flags for various c++
  standards (or raise an exception for versions that don't provide a given cxx
  standard)

Note that if a given cxx standard is the default, the associated flag property will
return ""; cxx98 is assumed to be the default standard so this is the behavior for
the associated property in the base compiler class.

Package changes:

* Improvements to the boost spec to take advantage of the improved standard
  flag facility.
* Update the clingo spec to catch the new exception rather than look for an
  empty flag to indicate non-support (which is not part of the compiler flag API)
2018-06-08 13:49:31 -07:00
Yifan Zhu
ceb2790f30 r-mice: new package (#8423)
* r-mice: new package

* flake8 fixed
2018-06-08 14:48:54 -05:00
Elizabeth Fischer
4a53942ee1 tcl package: Install sources (#8153)
The tcl package references the original sources upon install, and the tk build
requires the tcl sources. This updates the tcl package to install its sources following
the example of #4102, and also updates the tclConfig.sh file to properly reference
the installed sources (rather than the staging directory created by Spack).
2018-06-08 11:10:40 -07:00
Oliver Pola
cd860d7554 new version scotch@6.0.5a (#8254)
* new version scotch@6.0.5a

* patch metis headers on scotch@6.0.4 according to https://gforge.inria.fr/tracker/?func=detail&atid=1082&aid=19521&group_id=248
2018-06-08 08:39:03 -05:00
Ricardo Silva
9b2953939b GDL and missing dependencies (#8283)
* GDL and missing dependencies

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>

* GDL and GraphicsMagick improvements

* GDL: sort variants and dependencies, add descriptions
* GDL: add wx variant
* GDL: make variants explicit (in cmake args)
* GraphicsMagick: sort dependencies
* GraphicsMagick: cleanup boilerplate comments

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>

* Improvements/Fixes for gdl, plplot and graphicsmagick

* gdl:
  * variants:
    * openmp
    * be explicit about enabling/disabling x11
  * dependencies:
    * logic for plplot with/without wx
    * some previously missing (where being picked up from the system)

* graphicsmagick: previously missing dependencies (where being picked up from the system)

* plplot: more versions + variants + dependencies

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>

* GDL: hdf4/5 variants

* also sorted explicit enabling/disabling of cmake flags for readability

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>

* plplot: fix variant descriptions

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>

* Add tcl variant, use find_libraries for portability

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>

* plplot: flake8

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>
2018-06-08 08:35:28 -05:00
Michael Kuhn
7488ed4ff5 go: Update to 1.10.3 (#8426) 2018-06-08 07:35:43 -05:00
sknigh
7f6f83d173 Added elastic search (#8424) 2018-06-07 23:17:07 -05:00
Chris Green
25024b68d0 Update intel-tbb to 2018.3 and improve version URLs, dependencies and patching. (#7932)
* Update to 2018.3 and improve version URLs, dependencies and patching.

Improve to version -> URL translation to be algorithmic rather than manual.

Make binutils build dependency explicit where appropriate because we're sensitive to the assembler used.

Build's use of '-mrtm' is only patched away if it needs to be because the assembler is too old.

Incorporate @adamjstewart request to convert GCC version check to a conflict.

* Allow specification of C++ standard.

* Improve TBB patch per PR comments.

* Restrict RTM patch application to older OS only.

* New version 2018_U4.
2018-06-07 23:16:31 -05:00
Miles Perry
21ff3c9ac1 pbbam: new package (#8365)
* pbbam: new package

* pbbam: updated version

* pbbam: added option tests handling

* pbbam: flake8 edits
2018-06-07 22:44:30 -05:00
Corey McNeish
c8a3a650fa Fix hydrogen@develop build (#8262)
* Delete support for old versions of Elemental in Hydrogen

* Fix cmake_args versions in lbann

* Remove unused import (again)

* Revert elemental to pre-llnl fork

* Strip tailing whitespace from libgfortran.so

* Fix flake8

* Remove debug print

*  * Add back elemental@develop
 * Prohibit installation of hydrogen previous to 0.99

* Fix flake8

* Change cmake_args error to a conflicts for old versions of Hydrogen

* Use ~ not -
2018-06-07 18:08:23 -05:00
Yifan Zhu
1a8bb78824 Fermi Science Tools: New package (#8126)
* fermisciencetools: new package

* fermisciencetools: new package

* added comments about the error in building the source distribution; fixed flake8 errors
2018-06-07 14:07:39 -05:00
healther
1d3ad6ea7e add sqlitebrowser (#8418)
* add sqlitebrowser

Change-Id: I20cac709509e82d348cebc11b0d584b53b2ad3d4

* add message and clean up unnecessary code

Change-Id: Ib9d2229ee25d751274680d06824891ee78fa5970

* and make flake8 happy

Change-Id: I814eb89eefe1767af4d8043b08b61991750516df

* make gcc-independence great again

Change-Id: I75f7271757782a6735eb7f03c0551d190722974d

* remove explicit import of dso_suffix

Change-Id: I626c6391b22524895199db5508606c4cf22bf9b5
2018-06-07 11:34:29 -05:00
healther
af881b8c2e fix qt@5.8: build on systems without wayland (#8417)
* fix qt@5.8: build on systems without wayland

Change-Id: I56b83208edd46f50e003d82c071e296e905bfb15

* add links

Change-Id: Ia16fc20632690340f33df77fbdcb1a166d49cedc

* move 5.8 comparison into 5.7 configure block

Change-Id: I7dc606beeb5b5bf4e8263bc50d28de6591633c99
2018-06-07 10:50:05 -05:00
Daryl W. Grunau
a6e0837b31 googletest: add a shared variant for all supported versions (#8373)
* add a shared variant for all supported versions

* address comment from @citibeth about MacOS lib installs

* address additional comments from @citibeth about MacOS lib installs

* set +shared variant to be default behavior
2018-06-07 10:34:37 -05:00
healther
b5a48f44bc add commented test dependencies (#8407)
* add commented test dependencies

Change-Id: I38ffd3caa77a59f2a0a7ae92a9c8e8215cf5b4d6

* readd make('test') to openssl

Change-Id: Ia3733a3848a2a26729b4050c7d4439ea9de17b1a
2018-06-07 10:33:59 -05:00
Sajid Ali
f1ba43d4a4 modified: var/spack/repos/builtin/packages/py-psutil/package.py (#8420) 2018-06-07 10:26:48 -05:00
Javier Cervantes
f3cb8ee6cf Add new package: ftgl (#8416)
* Add new package: ftgl

* Check version using decorator
2018-06-07 08:48:27 -05:00
Axel Huebl
93791beb23 openPMD-api: Update Dependencies (#8330)
We need a newer version of HDF5 and dropped the boost dependency.

Modernize the test variant to the spack test functionality.
2018-06-07 08:12:18 -05:00
healther
7e649c1205 add package py-cartopy and dependencies (#8406)
* add package py-cartopy

Change-Id: Ifbe541e852921c384a381594a2c1110814556311

* fix comments and flake8

Change-Id: I8d5e994580e8252e00654e68ad79d74e06089939

* remove pip dependency... not sure why added in the first place

Change-Id: Ie2a788887dac30778cc43931a0732980a347514d

* move build, link, run to default dependencies

Change-Id: I1ec0cb7dc4a697c4ca9e68a0cc0d8694cc21c100
2018-06-07 08:10:39 -05:00
Javier Cervantes
728351faae Add new package: davix (#8376)
* Add new package: davix

* Add list_url

* Remove extra spaces, add list_depth and specify dependency type
2018-06-06 18:54:07 -05:00
Sheng Di
8e161f1034 remove pwrType from the interface SZ_compress_args() (#8414) 2018-06-06 17:44:47 -05:00
Yifan Zhu
2c13e9c0e5 r-mitml: new package and its dependencies r-jomo and r-pan (#8412) 2018-06-06 17:44:32 -05:00
ynanyam
5c3adff49b libjpeg-turbo: updated checksums and added autoreconf for older versions (#8411) 2018-06-06 16:18:03 -05:00
Axel Huebl
0495b5474b ADIOS: Serial API with Parallel Lib (#8409)
Provides a patch for the fix in
  https://github.com/ornladios/ADIOS/pull/182

Installed ADIOS MPI-enabled libraries are with that able to also
perform serial I/O without the need to start the whole app via
`mpiexec`.
2018-06-06 15:38:36 -05:00
Javier Cervantes
8b261506cb Add new package: rngstreams (#8395)
* Add new package: rngstreams

* Remove unnecessary list_url
2018-06-06 12:10:56 -05:00
Axel Huebl
d1d731bf83 xsimd: test type (#8405)
Add the new type 'test` to the `googletest` dependency
of xsimd.
2018-06-06 12:10:34 -05:00
Javier Cervantes
34149e9a2b Add new package: prng (#8396)
* Add new package: prng

* Add missing dependencies and use force_autoreconf option

* Add dependency types
2018-06-06 12:07:16 -05:00
Axel Huebl
1a27f911d3 Fix ADIOS 1.13.1: Maxium SZ (#8408)
Fix the maximum accepted SZ version for the latest ADIOS release.
2018-06-06 11:58:15 -05:00
Axel Huebl
e6d2cd6ff0 numpy: nosetest (#8404)
the type 'test' exists now :-)
2018-06-06 10:33:31 -05:00
Axel Huebl
6449f5bde7 ISAAC Server 1.3.3 (#8403)
Forgot to bump this package with the library release.
2018-06-06 10:12:47 -05:00
Andrey Prokopenko
c86628880f Trilinos update (#8363)
* trilinos: add more package conflicts

This was done by putting in required lib dependencies from each
package's `cmake/Dependencies.cmake`.

* trilinos: added few more trilinos packages

* trilinos: hiccup fix
2018-06-06 08:04:33 -05:00
lingnanyuan
7c1231e7f8 r-splitstackshape: Create new package. (#8370)
* r-splitstackshape: Create new package.

* r-splitstackshape: Add version constraints.

* add list_url and change dependency type.
2018-06-06 08:03:23 -05:00
Sheng Di
b0b3b258c0 add 1.4.13.4 for SZ (#8375)
* add 1.4.13.4 for SZ

* undo spack link (change llnl/spack to spack/spack) and change .zip to .tar.gz

* revise package.py for SZ 1.4.13.4 based on Adam's comments.
2018-06-06 08:02:03 -05:00
Massimiliano Culpo
6cc4ad4caa py-mpmath: added version 1.0.0 (#8382)
* py-mpmath: added version 1.0.0

* Fixed checksum for version 0.19
2018-06-06 07:59:53 -05:00
Massimiliano Culpo
891a15f409 py-scikit-learn: added version 0.19.1 and updated dependencies (#8399)
py-numpy: added version 1.14.3
py-scipy: added version 1.1.0
2018-06-06 07:41:48 -05:00
Massimiliano Culpo
38ccc07a48
py-theano: added version 1.0.2 (#8400) 2018-06-06 13:58:20 +02:00
Massimiliano Culpo
e107a50d0a py-sympy: added version 1.1.1 (#8381) 2018-06-05 13:42:18 -05:00
Massimiliano Culpo
ee735e58a8 py-cython: added version 0.28.3 (#8379) 2018-06-05 13:36:29 -05:00
Massimiliano Culpo
88e18a3db7 Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377) 2018-06-05 13:36:09 -05:00
Massimiliano Culpo
e7f82163bf py-virtualenv: added version 16.0.0 (#8380) 2018-06-05 13:35:43 -05:00
Daniel Topa
a226559347 added line 43 (#8369)
version('1.4.1.2', '38c7d33210155e5796b16d536d1b5cfe')

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-06-04 15:04:45 -05:00
Daryl W. Grunau
4ea16fe3e4 clean up version names (#8368) 2018-06-04 15:04:12 -05:00
Yifan Zhu
fcfcd7689a New package: phast (#7993)
* adding partially completed recipe for phast. will need clapack as dependency

* try to install phast

* seems to still need CLAPCK

* using CLAPACK instead

* phast: updated

* fixed flake8 error

* phast cannot build with clapack built with external blas?

* phast: depend on clapack built without external blas

* fixed flake8 errors

* phast: updated build_directory
2018-06-04 13:22:47 -05:00
Yifan Zhu
3144eb4039 New package: clapack (#7992)
* clapack: new package

* clapack: updated edit phase and fixed flake9 errors

* clapack: added description for variant

* clapack: updated

* removed .package.py.swo
2018-06-04 13:19:27 -05:00
Axel Huebl
add7f2b09a pybind11: test functionality (#8304)
* pybind11: test support

Add a test functionality to pybind11.

* CMake: test also on "make check"

Some projects use non-CTest manual targets for tests.
2018-06-04 09:50:02 -05:00
Mario Melara
20a89ca326 Add branch with bugfix (#8355) 2018-06-03 22:20:57 -05:00
healther
ff56d739a0 add 2.17.1 for git (#8316) 2018-06-02 19:28:54 -06:00