Commit graph

17598 commits

Author SHA1 Message Date
Paul
7b7458a0f4
Add Go versions 1.14.2 and 1.13.10 (#16000) 2020-04-10 14:35:51 -05:00
Christoph Junghans
c4360a918b
gromacs: install header files (#15996) 2020-04-10 13:36:26 -05:00
Tom Payerle
a29956d71e
gdal: Patch to support hdf linked against libtirpc (#15995)
If hdf was built with +libtirpc, we need to add -ltirpc to our link
flags.
2020-04-10 13:36:08 -05:00
Tom Payerle
343a499aa8
hdf: Add option to link against libtirpc package (#15993)
This adds a boolean 'libtirpc' variant to the hdf package.
Default is false, which will reproduce previous behavior (which
was to rely either on system xdr headers/library, or have hdf use
it's builtin xdr lib/headers (which are only for 32 bit))

If true, a dependency is added on 'libtirpc', and the LIBS and
CPPFLAGS are updated in the configure command to find the libtirpc
library and xdr.h header.

This is needed as RHEL8 (and presumably other distros have or will be)
removed xdr.h from glib-headers package,which was breaking the previous
behavior of using system xdr headers.
2020-04-10 13:23:05 -05:00
Andrew W Elble
c01a968ada
new package: py-torchsummary (#15990)
* new package: py-torchsummary

* add numpy
2020-04-10 13:13:51 -05:00
Andrew W Elble
42b63e6b7e
new package: py-torchaudio (#15989) 2020-04-10 10:53:12 -05:00
Andrew W Elble
aeb628ea74
opencv: assorted fixes (#15971)
* opencv: assorted fixes

1. depends on blas when +lapack
2. set cuda nvcc flags for cuda_arch
3. let cuda/contrib builds work
4. depends on hdf5 when cuda/contrib
5. depends on ant when +java
6. allow protobuf version to be different
7. let opencv recompile it's protoc files.

* ant is a build-time dependency

* register +cuda~contrib as impossible.
2020-04-10 09:49:32 -05:00
Tomoki, Karatsu
08a491b062
fujitsu compiler: Delete custom environment function. (#15988) 2020-04-10 09:38:02 -05:00
Andrew W Elble
3b3bd6e173
New package: tensorboardX (#15955)
* New package: tensorboardX

* prune back to just what's in setup.py for now
2020-04-10 09:37:18 -05:00
iarspider
77e144d6e5
Add new version of py-hypothesis (#15942)
* Add new version of py-hypothesis

* Update package.py

* Update package.py
2020-04-10 09:36:16 -05:00
Jacob Merson
d0fbe1add2
Update yaml-cpp package to enable for build of old api (#15983)
The old api is found in version 0.3.0 which uses a different release
name, so the url function was updated to properly find the older
releases. Also, this removes the boost constraint on the 0.3.0 version
which does not need it.
2020-04-10 09:35:36 -05:00
tilne
0d96e8a27d
update URL and sha256 for aws-parallelcluster 2.6.1 (#15980)
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-04-09 22:00:03 -05:00
Justin S
2d220c8eb0
py-clint: new package at 0.5.1 (#15905)
* py-clint: new package at 0.5.1

* py-clint: update py-setuptools dep type
2020-04-09 17:12:17 -05:00
Michael Kuhn
35c4f614c4
meson: Add 0.54.0 (#15952)
* meson: Add 0.54.0

This change also improves the rpath patch we are using. Instead of never
removing the rpath, we now only keep it if running within Spack to
guarantee consistent behavior of Meson.

* meson: Make ninja a hard dependency
2020-04-09 17:11:52 -05:00
Jennifer Herting
e0e092050c
[py-pygdal] added version 3.0.4.6 (#15973) 2020-04-09 16:58:50 -05:00
noguchi-k
834a520af4
aperture-photometry: add new version (#15967) 2020-04-09 12:04:27 -05:00
Ryan Pepper
f683d714f8
Update doxygen package (#15969)
* Update doxygen package

* Add new version releases 1.8.16 and 1.8.17
* Add mscgen as an optional dependency.

* Update doxygen package.py

Fix typo in mscgen dependency specification

* Remove whitespace for flake8
2020-04-09 12:03:30 -05:00
George Hartzell
1b2638c9b1
primer3: move to github, add 2.5.0, fix 2.3.7 (#15958)
* primer3: move to github, add 2.5.0, fix 2.3.7

- The Primer3 project moved to GitHub.

  - update the URL
  - compare the tarballs 2.3.7 from Sourceforge and github, no
    significant differences (e.g. the Sourceforge tarball contained a
    couple of "tmp" files).
  - update the signature for the 2.3.7 tarball.

- @2.3.7 doesn't build with gcc@8.4.0, there's a dubious pointer/int
  comparison that causes an error.  It was fixed upstream in newer
  versions, apply simple patch to this version so that it continues to
  be build-able with newer compilers.  See:

  - https://github.com/primer3-org/primer3/issues/2
  - https://github.com/primer3-org/primer3/issues/3

- Add info for @2.5.0, which builds cleanly.

* Flake8 cleanup
2020-04-09 11:53:34 -05:00
Sergey Kosukhin
05a80523c8
NetCDF packages: switch to the official FTP server. (#15641) 2020-04-09 09:57:07 -05:00
Jennifer Herting
b75ba93589
New package: gtk-doc (#15768)
* [gtk-doc] created template

* [gtk-doc] using custom url to standardize on dotted version

* [gtk-doc] added description and homepage

* [gtk-doc] added dependencies and added pdf variant

* [gtk-doc] commented out pdf variant

* [gtk-doc] cleaned up leftover fixmes

* [gtk-doc] flake8

* [gtk-doc] readded url

* [gtk-doc] python packages are build and run dependencies
2020-04-09 09:56:33 -05:00
Massimiliano Culpo
e53a98cb4f
papi: check existence of a fortran compiler (#15968)
fixes #5029
2020-04-09 15:33:24 +02:00
vvolkl
5320268033
[podio] add recipe for podio (#15726) 2020-04-09 10:29:19 +01:00
Andrew W Elble
ee0cbd7a17
py-torch: Fix v1.4.0 by adding v1.4.1 (#15761)
* py-torch: Fix v1.4.0 by adding v1.4.1

version/tag hack so that 1.4.0 is still workable.
see pytorch/pytorch#35149

* delete/disable fbgemm support in 1.4.0

* moved conflict
2020-04-09 10:50:08 +02:00
Peter Scheibel
75640f0ed9
NAG compiler fix: skip implicit RPATH detection (#15902)
* Skip collection of compiler link paths if compiler does not define a verbose flag

* modules config bug: allow user to configure a compiler without an explicit entry for loaded modules
2020-04-09 10:48:29 +02:00
darmac
6d8a59be5b
uchardet: added package at v0.6.0 (#15937) 2020-04-09 09:19:52 +02:00
G-Ragghianti
f9c833e078
Papi packge: refactored to inherit from AutotoolsPackage (#15962) 2020-04-09 09:13:35 +02:00
darmac
93a53f1faf
elasticsearch: change depends on from jdk to java (#15964) 2020-04-08 22:35:46 -05:00
Michael Kuhn
3c8bd21dae
glib: Add new stable versions (#15947)
Newer versions of glib require Meson, so this PR adds support for that
using a hybrid approach. glib@5.28: will be built using Meson, older
versions still make use of Autotools.
2020-04-08 22:32:08 -05:00
T.Tian
e96750472e
py-gpaw: Add libvdwxc as variant (#15948)
* Add libvdwxc as variant

* py-gpaw: add missing line for libvdwxc conditions
2020-04-08 22:22:19 -05:00
Aniruddha Marathe
9035dc6b3d
- Fixes build issues. (#15951)
- Updates Kripke URL to its Github repository.
- Adds previous Kripke versions.
- Adds 'caliper' variant.
2020-04-08 22:13:13 -05:00
Andrew W Elble
8abffd4189
py-tensorflow-estimator: fix build (#15953)
Change the build to work again, and be more in line with the other
tensorflow packages. Add version 2.1.
2020-04-08 22:10:37 -05:00
Paul Ferrell
d05f25a4d0
Fixed bad expand option for openjdk versions. (#15956)
The most recent change to the openjdk package set expand=False for all versions
of the package. This means only the unexpanded archive will be installed, which is not correct.
2020-04-08 22:07:00 -05:00
Justin S
4886a2d5ef
py-awesome-slugify: new package at 1.6.5 (#15907)
* py-awesome-slugify: new package at 1.6.5

* py-awesome-slugify: fix typo in version range

* py-awesome-slugify: update dependencies
2020-04-08 21:45:33 -05:00
Nichols A. Romero
bf4eec94ca
F18 update April 2020 (#15930)
* Update dependencies and support variant for Fortran Intermediate Representation.

* Add Cmake flags that toggle Fortran Intermediate Representation on/off. Exclude Flang tests for now.

* f18+fir variant needs next release of llvm or master.

* Only build tests if you are pass in --test to spack install
2020-04-08 20:32:56 -05:00
Andrew W Elble
c5b625ca90
New package: py-tensorboard (#15829)
* New package: py-tensorboard

* some basic dependencies based on requirements.txt
remove the older version that doesn't build

* requested changes

* add additional dependencies

* more dependency changes
2020-04-08 12:46:36 -05:00
Andrew W Elble
c6c53df916
py-onnx: only use py-typing if python < 3.5 (#15931)
* py-onnx: only use py-typing if python < 3.5

avoids a 'Callable has no attribute __abc_registry' error. See
onnx/onnx#2199 and python/typing#573

* add version 1.6.0 while we're here.
2020-04-08 12:46:16 -05:00
iarspider
8ed8bb0a76
MariaDB: added v10.4.12 (#15943) 2020-04-08 14:34:56 +02:00
iarspider
fcf0c6cb68
pytest: added v4.6.9 (#15944) 2020-04-08 14:34:09 +02:00
darmac
62cc8158de
http-parser: added package at v2.9.4 (#15936) 2020-04-08 09:04:01 +02:00
Xavier Delaruelle
4031e9a2a7
environment-modules: add version 4.5.0 (#15938)
Add new version 4.5.0 and update quarantine variable list to also
include LD_PRELOAD in addition to LD_LIBRARY_PATH (to avoid side-effect
when the first depends on the latter).
2020-04-08 09:01:22 +02:00
George Hartzell
66cec5a151
Update hugo version and add extended variant (#15933)
- Add info for version 0.68.3
- Add variant to package that enables the "extended" features.  It
  works with both of the existing versions (not sure how far back it
  goes, but confirmed that it's valid fro 0.53).

Tested on OS X with go@1.14.1.
2020-04-07 22:27:23 -05:00
darmac
e16593e551
Add new package: open-isns (#15914)
* Add new package: open-isns

* refine args
2020-04-07 22:27:04 -05:00
Justin S
998dc7a121
py-cyvcf2: new package at 0.11.7 (#15908)
* py-cyvcf2: new package at 0.11.7

* py-cyvcf2: update dependencies
2020-04-07 20:41:18 -05:00
Justin S
7927394fb3
py-yahmm: new package at 1.1.3 (#15909)
* py-yahmm: new package at 1.1.3

* py-yahmm: update dependencies
2020-04-07 20:41:01 -05:00
Justin S
233fc5ff23
py-unidecode: new package at 1.1.1 (#15906)
* py-unidecode: new package at 1.1.1

* py-unidecode: update py-setuptools dep type

* py-unidecode: add python version
2020-04-07 20:40:33 -05:00
Justin S
9b33788573
py-utils: new package at 1.0.1 (#15904)
* py-utils: new package at 1.0.1

* py-utils: update py-setuptools dep type

* py-utils: fix dependency condition
2020-04-07 20:39:39 -05:00
Justin S
cc4bf086b9
py-args: new package at 0.1.0 (#15903)
* py-args: new package at 0.1.0

* py-args: update dependencies
2020-04-07 20:39:03 -05:00
Massimiliano Culpo
fb0bcf4127
openfoam: modified flex to be a build + link dependency (#15917)
fixes #15863

Since openfoam-org needs FlexInclude.h "flex" needs to
be also a link dependency.
2020-04-07 17:04:54 -05:00
ktsai7
0ac77b815f
update gasnet spackage cmake args (#15920)
* update gasnet spackage cmake args

* fix style errors

* trailing whitespace
2020-04-07 17:03:32 -05:00
Benjamin Tovar
0074995ecf
updates CCTools to version 7.1.2 (#15923) 2020-04-07 17:03:18 -05:00