Commit graph

12577 commits

Author SHA1 Message Date
arjun-raj-kuppala
7fb83047fd
Hipify clang with AMD rocm 3.7.0 update (#18672)
* Hipify clang with rocm 3.7.0 update

* Update var/spack/repos/builtin/packages/hipify-clang/package.py

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-09-16 22:18:48 -05:00
Greg Sjaardema
9a5f043ce6
seacas: Force use of non-mpi-enabled hdf5 (#18702)
Due to recent changes in the `netcdf-c` package, it is now necessary to explicitly request a non-mpi-enabled hdf5 build if building a non-mpi-enabled seacas.
2020-09-16 16:37:13 -05:00
Robert Blake
f95d7959b2
lustre: Adding external support. Closing #18698 (#18700) 2020-09-16 16:29:59 -05:00
Simon Frasch
91649763ab
spla: Add version 1.1.1 and fix cmake flag when build with +cuda (#18699) 2020-09-16 16:27:00 -05:00
Sajid Ali
7c23498f1d
bump CGAL version (#18693)
* bump CGAL version

* Address reviewer comments

* flake8 fix

* Address reviewer comments

* Address reviewer comments
2020-09-16 16:22:40 -05:00
Andre Sailer
635b8243fe
[dd4hep]: add variant lcio (#18691) 2020-09-16 17:33:14 +01:00
Tiziano Müller
0d5c065678
libvdwxc: unbreak concretization, request fftw-api (#18688)
* libvdwxc: unbreak concretization, request fftw-api

mixing both fftw and fftw-api in a dependency tree can trigger the
following:

```
$ spack spec cp2k@master +sirius
==> [2020-09-16-12:36:06.552981] sirius applying constraint gsl
==> [2020-09-16-12:36:06.554270] sirius applying constraint openblas@0.3.10%gcc@7.5.0~consistent_fpcsr~ilp64+pic+shared threads=none arch=linux-opensuse_leap15-sandybridge
Traceback (most recent call last):
  File "./bin/spack", line 64, in <module>
    sys.exit(spack.main.main())
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 762, in main
    return _invoke_command(command, parser, args, unknown)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 490, in _invoke_command
    return_val = command(parser, args)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/cmd/spec.py", line 103, in spec
    spec.concretize()
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2228, in concretize
    user_spec_deps=user_spec_deps),
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2716, in normalize
    visited, all_spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
    dep, visited, spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2613, in _merge_dependency
    visited, spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
    dep, visited, spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2554, in _merge_dependency
    provider = self._find_provider(dep, provider_index)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2489, in _find_provider
    providers = provider_index.providers_for(vdep)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/provider_index.py", line 80, in providers_for
    return sorted(s.copy() for s in result)
  File "/data/tiziano/debug-spack/spack2/lib/spack/llnl/util/lang.py", line 249, in <lambda>
    lambda s, o: o is not None and s._cmp_key() < o._cmp_key())
TypeError: '<' not supported between instances of 'str' and 'NoneType'
```

while at the same point disallowing MKL as a fftw provider.
Solving both issues by depending on `fftw-api@3` instead and adding a
conflict on `^fftw~mpi` when using `+mpi` (thanks to alalazo).

* cp2k: use conflicts instead of runtime checks for fftw/openblas variants
2020-09-16 10:41:46 -05:00
t-nojiri
cb218058bc
fraggenescan: Modify build_targets for aarch64 (#18687) 2020-09-16 10:40:33 -05:00
Xavier Delaruelle
0b3e860608
environment-modules: add version 4.6.0 (#18686) 2020-09-16 10:39:55 -05:00
Robert Pavel
2f0565de64
Added spackage for cosmoflow-benchmark proxy app (#18685)
* Initial Draft of Cosmoflow Spackage

Need to add in logic to streamline cpu/gpu builds

* Added ~cuda logic to cosmoflow spackage

Added logic to support a ~cuda build for cosmoflow

* Requested Changes to Cosmoflow Spackage

Made requested changes to cosmoflow spackage
2020-09-16 10:18:01 -05:00
Severin Strobl
e41c3ad1fc
Likwid versions >= 5.0.0 depend on Lua 5.2. (#18675)
* Likwid versions >= 5.0.0 depend on Lua 5.2.

According to https://github.com/RRZE-HPC/likwid/issues/324 recent
versions of Likwid require Lua 5.2.

* Update var/spack/repos/builtin/packages/likwid/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-16 10:16:08 -05:00
Jason Lee
1a9f97fd0d
jemalloc: Use AutotoolsPackage and allow for arbitrary public API prefixes (#18680)
Removed je variant
2020-09-15 20:37:05 -05:00
Greg Sjaardema
6a3583f181
MatIO: Update repository and add new versions (#18683)
MatIO development has switched to github from sourceforge.  Updated the `git` and `url` variables and added the four new versions (1.5.14 -- 1.5.17) that have been released since the last update of this package.
2020-09-15 16:43:45 -05:00
arjun-raj-kuppala
bad9f2bc28
AMD ROCmValidationSuite recipe for 3.5.0 and 3.7.0 (#18678)
* AMD ROCmValidationSuite recipe for 3.5.0 and 3.7.0

* Updated the PR comments for rocmvalidationsuite recipe
2020-09-15 13:16:41 -05:00
Nikolay Simakov
1b1bfd883a
namd: Added optimization auto-selection for skylake-X+ CPU for 2.14 and 2.15a1 (AVX512 tile) (#18671) 2020-09-15 10:08:26 -05:00
Sergey Kosukhin
5cff304809
CLAW: update the package (#18673) 2020-09-15 10:04:59 -05:00
Tom Payerle
6752a1c377
Qbox minor issues 18664 (#18665)
* qbox: install to correct directory structure

* qbox: Have qb executable put in bin rather than src subdir

* qbox: Fix python script shebangs to use python from path

* qbox: Add dependencies on gnuplot, python2 for utilities

* qbox: fix flake8 issue

* qbox: Add $prefix/util to PATH
2020-09-15 09:54:26 -05:00
ketsubouchi
33e8dcad99
nseg: add return 0; to void functions (#18481) 2020-09-15 10:24:51 +02:00
Adam J. Stewart
5e6875008c
fish: add dependencies, patch MacOS (#18526) 2020-09-15 08:43:53 +02:00
Adam J. Stewart
5f0c3427ae
py-cmocean: added new package at v2.0 (#18614) 2020-09-15 08:36:26 +02:00
Adam J. Stewart
2af9e44340
Add setuptools run-time dependency to various Python packages (#18616) 2020-09-15 08:30:59 +02:00
Adam J. Stewart
b3ee04c6ef
py-jupyterlab-pygments: added new package at v0.1.1 (#18627) 2020-09-15 08:30:08 +02:00
Adam J. Stewart
f7030287d3
py-nest-asyncio: add new package at v1.4.0 (#18629) 2020-09-15 08:28:51 +02:00
Adam J. Stewart
445988011c
py-ipykernel: added v5.3.4, moved url to PyPI (#18630) 2020-09-15 08:28:17 +02:00
Adam J. Stewart
ef37852bb4
py-ipython: added v7.18.1 (#18631) 2020-09-15 08:26:27 +02:00
Adam J. Stewart
40a66317e8
py-jupyter-client: added v6.1.7, moved url to PyPI (#18632) 2020-09-15 08:25:39 +02:00
Adam J. Stewart
792c48a558
py-jupyter-core: updated the type of the setuptools dependency (#18633) 2020-09-15 07:42:28 +02:00
Adam J. Stewart
0448ade7b5
py-jupyterlab-server: added v1.2.0 (#18634) 2020-09-15 07:39:30 +02:00
Adam J. Stewart
defde398c4
py-argon2-cffi: added new package at v20.1.0 (#18626) 2020-09-15 07:38:16 +02:00
Adam J. Stewart
77d20906c0
py-jupyterlab: added v2.2.7 (#18635) 2020-09-15 07:20:15 +02:00
Adam J. Stewart
682223f1f4
py-nbformat: add v5.0.7, moved url to PyPI (#18637) 2020-09-15 07:18:12 +02:00
Adam J. Stewart
60a5a176fb
py-terminado: added v0.8.3 (#18639) 2020-09-15 07:15:38 +02:00
Adam J. Stewart
c59836222e
py-traitlets: added v5.0.4, moved url to PyPI (#18640) 2020-09-15 07:15:00 +02:00
Robert Pavel
4fc2370559
Added Missing Tag to Cradl Spackage (#18669)
Added missing proxy apps tag to cradl spackage
2020-09-14 18:55:53 -06:00
Robert Pavel
a2673aeddd
CRADL Machine Learning Proxy Spackage (#18668)
* Initial CRADL Spackage Work

Currently resolving ```--single-version-externally-managed``` error

* Fixed GPUtil Issues

Thanks to Vinay Ramakrishnaiah for overwriting install

* Finished CRADL Install Function

Finished CRADL install function which is basically copying the scripts
to the install directory. Also resolved flake8 issues for PR purposes
2020-09-14 14:25:49 -06:00
Simon Frasch
49512e21ab
SIRIUS: Update dependencies (#18622)
* sirius: Fixed dependency spfft when build with +rocm

* sirius: Added new dependency spla for develop build

* sirius: Added maintainer
2020-09-14 12:23:32 -05:00
darmac
5f47170492
Add new package: webbench (#18650)
* Add new package: webbench

* Update var/spack/repos/builtin/packages/webbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:57:40 -05:00
ketsubouchi
41b68741ec
cpio: add --rtlib=compiler-rt for %fj (#18619)
* cpio: add --rtlib=compiler-rt for %fj

* cpio: simplify if

* Update var/spack/repos/builtin/packages/cpio/package.py

This seems better.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:55:47 -05:00
t-nojiri
a250006449
ngmlr: support for aarch64 (#18621)
* ngmlr: support for aarch64

* ngmlr: Fixed patch file
2020-09-13 23:14:59 -05:00
ketsubouchi
3cfce42563
nek5000: Support Fujitsu fortran (#18659) 2020-09-13 23:14:04 -05:00
Paul
c29b74e7ad
Updated FZF package for newer versions. (#18608)
* Support for external find.
* Added latest version (0.22.0) and conditions to package to continue
support for older versions.
2020-09-13 11:27:56 -05:00
Joseph Wang
58f101de88
use github for download (#18657) 2020-09-13 10:23:46 -05:00
Andrew W Elble
a734dabf2b
new package: py-reproject (#18641)
* new package: py-reproject
add setuptools build/run dep to py-astropy-healpix

* fixes

* fix
2020-09-12 15:37:34 -05:00
darmac
85f7a8bf71
Add new package: delta (#18648) 2020-09-12 15:37:14 -05:00
darmac
10dab474ce
cvs: add a patch for segv issue (#18649) 2020-09-12 09:47:39 -05:00
darmac
e355fc16ad
Add new package: dbxtool (#18651) 2020-09-12 09:45:05 -05:00
darmac
3211ac5136
Add new package: geoip-api-c (#18653) 2020-09-12 09:44:28 -05:00
darmac
cde4654525
Add new package: libspiro (#18654) 2020-09-12 09:44:02 -05:00
darmac
6d39e6ebea
Add new package: hping (#18311)
* Add new package: hping

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Fix flake8 errors

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-12 09:36:30 -05:00
darmac
128731ec74
Add new package: jetty-project (#18555)
* Add new package: jetty-project

* refine dependency

* refine maven version
2020-09-12 09:35:38 -05:00