Commit graph

24712 commits

Author SHA1 Message Date
dependabot[bot]
dd7acecf3d
build(deps): bump docker/build-push-action from 2.8.0 to 2.9.0 (#28719)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2.8.0 to 2.9.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](1814d3dfb3...7f9d37fa54)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-02-02 11:57:31 +01:00
Carlos Bederián
d3bfdcb566
gromacs: Add versions 2021.4 and 2021.5 (#28722) 2022-02-02 03:44:12 -07:00
Marcus Boden
e1ec08b749
Snakemake: add v6.15.1 (#28724) 2022-02-02 10:32:36 +01:00
Glenn Johnson
3b5afef842
new packages: py-rst2pdf and py-smartypants (#28697)
* new packages: py-rst2pdf and py-smartypants

The py-smartypants package is a dependency of py-rst2pdf.

* add missing dependencies
2022-02-01 23:56:09 -07:00
Sebastian Pipping
b9bb303063
expat: Add latest release 2.4.4 with security fixes (#28692) 2022-02-01 16:29:29 -07:00
Adam J. Stewart
7144af9c3a
py-argparse: skip dep for newer Python (#28718) 2022-02-01 15:38:11 -07:00
Rao Garimella
50c6075509
Jali package: add version 1.1.6 (#28545)
Boost dependency is only needed for @:1.1.5
2022-02-01 14:22:24 -08:00
Harmen Stoppels
b93b64ca67
TermStatusLine: fix python 2.7 and add test (#28715)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-02-01 21:59:29 +01:00
Massimiliano Culpo
7c31d4d279
CI: macOS try to build latest GCC (#28709) 2022-02-01 21:29:27 +01:00
Nils Leif Fischer
4a29512113
py-rich: fix installation with poetry (#28710) 2022-02-01 14:19:40 -06:00
Teodor Nikolov
9cf20b9d32
Sarus: Add 1.4.1, use commits instead of tarballs, tests (#28705)
- To retrieve the correct spack version we need to get it from the git
  repo.

- Recommend installing the package with root for production

- Add Tomas as maintainer to sarus' spack package

- Add the option to disable unit tests in latest versions
2022-02-01 11:49:58 -07:00
Harmen Stoppels
165f686400
lua: add fetcher for luarocks (#28707) 2022-02-01 10:44:51 -07:00
Jose E. Roman
427d281d15
SLEPc: add v3.16.2 (#28706) 2022-02-01 09:38:28 -07:00
estewart08
0a595d488b
rocm-openmp-extras: add v4.3.1 and v4.5.0 (#27653) 2022-02-01 16:39:33 +01:00
kwryankrattiger
099a16ed8f
ParaView/VTK: Update hdf5 constraints (#28691)
hdf5@1.10: is required for the new version of vtkHDFReader
2022-02-01 09:50:11 -05:00
kwryankrattiger
eb7bc7fc4b
Ascent/Conduit: Update the +fortran build config (#28646)
Do not silently turn off fortran support based on checking if
a fortran compiler exists. Let the build fail if there is no
working fortran compiler.
2022-02-01 07:44:48 -07:00
Adam J. Stewart
bdfcf7c92b
py-torchgeo: specify libtiff variants (#28681) 2022-02-01 08:43:54 -06:00
Cyrus Harrison
3f6d045c53
conduit: add new variant and hcfg entry (#27822) 2022-02-01 13:53:30 +01:00
Cyrus Harrison
b300a9d7a5
dray: add new variant and host config entry (#28598) 2022-02-01 13:52:12 +01:00
Torbjörn Lönnemark
218b1c153c
p7zip: fix build on gcc 11 (#28376)
Fixes the following build failure when building with gcc 11:

         478    ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp: In member function 'virtual LONG NArchive::NWim::CHandler::GetArchiveProperty(PROPID, PROPVARIANT*)':
      >> 479    ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp:308:11: error: use of an operand of type 'bool' in 'operator++' is forbidden in C++17
         480      308 |           numMethods++;
         481          |           ^~~~~~~~~~
      >> 482    ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp:318:9: error: use of an operand of type 'bool' in 'operator++' is forbidden in C++17
         483      318 |         numMethods++;
         484          |         ^~~~~~~~~~
2022-02-01 12:26:00 +01:00
Nils Leif Fischer
c3bad2a935
gettext: find external (#28610) 2022-02-01 12:25:02 +01:00
Brent Huisman
dedf4a1470
Add version v0.6 to Arbor package. (#28628)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-02-01 12:24:28 +01:00
Sergey Kosukhin
0e28356aba
Eccodes: update urls and add new versions (#28614) 2022-02-01 12:20:06 +01:00
Massimiliano Culpo
80a3f01bbb
gcc: allow building 11.2.0 on macOS (#28662) 2022-02-01 11:19:24 +00:00
Cyrus Harrison
f5a70dece8
ascent: add patch for gcc 10 + 11 (#28592) 2022-02-01 12:18:48 +01:00
Mikhail Titov
d7e7542486
Update package versions: RADICAL-Cybertools (RE, RP, RS, RU) (#28523)
* rct: update packages (RE, RP, RS, RU) with new versions

* rct: minor version release for RP

* rct: fixed versions for dependencies (RS and RU)
2022-02-01 11:35:14 +01:00
Glenn Johnson
a3f0c3ca93
saga-gis: tweak dependencies and deprecate some versions (#28677)
- deprecate versions 2 and 3
- set needed opencv variants
- adjust proj constraint
- patch header path for opencv
2022-02-01 11:09:50 +01:00
Glenn Johnson
ab2187780b
libdc1394: update dependencies and add libraw1394 dependency (#28675) 2022-02-01 11:09:00 +01:00
Adam J. Stewart
7ac66547da
py-black: add v22.1.0 (#28680) 2022-02-01 11:06:24 +01:00
Pat Riehecky
4b52f0e4d7
jsonnet: add new package (#28645)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-01 10:22:52 +01:00
Mikael Simberg
d8dcb91297
pika: add v0.1.0 (#28684)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-02-01 10:20:01 +01:00
Valentin Volkl
5e8ef57a82
alpaka: add v0.8.0 (#28689) 2022-02-01 10:19:40 +01:00
Vicente Bolea
c9e135729c
vtk-m: add v1.7.1 release (#28690) 2022-02-01 10:19:19 +01:00
Nils Leif Fischer
8ccc4df6ff
charmpp: default backend to 'multicore' on macOS (#28443) 2022-02-01 10:17:48 +01:00
Tom Scogland
545a429646
llvm: add llvm_config helper (#28670)
Add a helper as a base to build better libs etc. methods
2022-02-01 09:58:39 +01:00
Paul Kuberry
bff5d253cf
xyce: add 'plugin' variant (#28698) 2022-02-01 09:49:57 +01:00
Ryan Marcellino
3456a355ce
maven: add v3.8.4 (#28699) 2022-02-01 09:48:52 +01:00
Dylan Jude
aedb106c5f
samrai: add "--enable-shared" option as "+shared" (#28695) 2022-02-01 09:48:19 +01:00
Adam J. Stewart
a4a23ff713
py-torch: fix python_platlib reference (#28565) 2022-02-01 09:44:08 +01:00
Adam J. Stewart
728ac61bd8
pygmo: fix build (#28702) 2022-02-01 09:38:06 +01:00
Glenn Johnson
21524f5149
opencv: add new version, variant, and patch (#27374)
* opencv: add new version, variant, and patch

- added version 4.5.4
- added tesseract variant
- added patch to not add system paths

* Add leptonica depends and contrib conflicts

* Add dependencies for 1394 support

- new package: libraw1394
- add sdl dependency to libdc1394
- add conflict for openjpeg and jasper

* Adjust dependencies and conflicts for opencv modules

* rewrite of opencv

- all prebuilt apps are now variants and can be installed
- core is no longer a variant. It was always built anyway so it was not
  really a variant.
- contrib is no longer a variant. All of the contrib modules are now
  available as variants.
- components that can not be built with Spack are no longer variants.
  They are set to 'off' to prevent pulling from system.
- handle the case where a module and a component have the same name
- use `with when` framework
- adjust dependencies and conflicts
- new package: libraw1394
- have libdc1394 depend on libraw1394
- patch to find clp
- patch to find onnx
- patch for cvv to find Qt
- format with black

* Incorporate recommended changes

- fix variants and dependencies on packages that depend on opencv
- remove opencv-3.2 and patches
- add some new patches to handle different versions
- cntk needs further work
- the openvslam package was markde deprecated as it is no longer an
  active project and the repository has no code

* Remove gmake dependency.

* Remove sdl support

SDL is only used in an example case, but the examples are not built.

* remove openvslam

* Remove opencv+flann variant from 3dtk

* Back out cfitsio constraint from py-astropy

* remove opencv+flann variant from dlib

* remove boost constraint from 3dtk

* Remove non-opencv related bohrium changes

* Adjustments for cntk

- protobuf constraint at version 3.10
- need specific variants for opencv
- improve patch

* Deprecate CNTK package

* variant tweaks

- added appropriate conflicts for cublas
- made cuda/cudev relationship explicit
- moved openx to pending components as it needs an openvx package

* fix isort style error

* Use date version from kaldi rather than commit

* Revert changes from a bad rebase

* Add +flann to 3dtk and dlib

* Use compression support with libtiff

* remove `+datasets` from opencv dependency 

The py-torchgeo package does not need opencv+datasets.

* fix typo

zip --> zlib
2022-01-31 21:24:03 -06:00
eugeneswalker
6e99f328b6
e4s ci: add spec: gptune (#28604) 2022-01-31 18:44:25 -08:00
eugeneswalker
d6d29f7c09
mesa18: depends on python@3.8.99 max (#28345) 2022-01-31 13:20:33 -07:00
Pat Riehecky
a5d0687115
Update Packages: py-asgiref, py-h11, py-websockets (#28649) 2022-01-31 14:13:44 -06:00
iarspider
a909f2d910
Add checksum for py-cryptography 3.2.1 (#28685) 2022-01-31 14:11:41 -06:00
liuyangzhuan
3b64ca30c7
changing site_packages_dir to python_platlib for gptune (#28669)
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize

* adding gptune package

* minor fix for macos spack test

* update patch for py-scikit-optimize; update test files for gptune

* fixing gptune package style error

* fixing unit tests

* a few changes reviewed in the PR

* improved gptune package.py with a few newly added/improved dependencies

* fixed a few style errors

* minor fix on package name py-pyro4

* fixing more style errors

* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* resolved a few issues in the PR

* fixing file permissions

* a few minor changes

* style correction

* minor correction to jq package file

* Update var/spack/repos/builtin/packages/py-pyro4/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixing a few issues in the PR

* adding py-selectors34 required by py-pyro4

* improved the superlu-dist package

* improved the superlu-dist package

* moree changes to gptune and py-selectors34 based on the PR

* Update var/spack/repos/builtin/packages/py-selectors34/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi

* fixing style issue of gptune

* changing file mode

* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant

* fixing style error

* corrected pddrive_spawn path in gptune test; enforcing gcc>7

* fixing style error

* setting environment variables when loading gptune

* removing debug print in hypre/package.py

* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR

* changing site_packages_dir to python_platlib

* not using python3.9 for py-gpy, which causes due to dropped support of tp_print

* more replacement of site_packages_dir

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-01-31 11:21:06 -08:00
Massimiliano Culpo
68cf57d0d0
Fix SECURITY.md file by adding v0.17.x to supported versions (#28661) 2022-01-31 10:04:06 -08:00
Harmen Stoppels
f080e593cb
julia: add targets constraint to llvm (#28682) 2022-01-31 06:29:23 -07:00
Paul Kuberry
fff9a29401
trilinos: Fix cxxstd effects for Trilinos versions <13 (#28663) 2022-01-31 00:41:21 -07:00
Adam J. Stewart
1679274ac2
py-horovod: add py-tensorflow-estimator dependency (#28674) 2022-01-29 20:22:19 -06:00