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7811 commits

Author SHA1 Message Date
clellsolomon
7ec12c59ab fzf package: change mirror and add vim plugin (#10920) 
This commit edits the Makefile to use github.com mirrors rather than the
default mirrors of the dependency packages installed by GO.
 2019-04-10 16:23:37 -07:00
Chuck Atkins
f1bdaa11d4 New Packages: ecp-io-sdk and ecp-viz-sdk (#11073) 2019-04-10 16:18:05 -07:00
Eric Martin
8f1ebfc73c py-requests: Add missing dependencies for versions 2.16.0 and up (#10996) 2019-04-10 15:38:28 -07:00
Patrick Gartung
a5315f3878
Fix bug when system perl is used. (#11034) 
* Fix bug when system perl is used.

If system perl is being used through packages.yaml there cannot be dependent modules.
The  setup_dependent_packages function should not do anything in that case.
 2019-04-10 08:44:27 -05:00
Denis Davydov
1e9748a3c8 dealii: fix build with tbb from intel parallel studio (#11138) 2019-04-10 14:51:38 +02:00
Denis Davydov
b2611c8086 suite-sparse: fix tbb patching (#11155) 2019-04-10 09:21:54 +02:00
Michael Kuhn
1ac576923f libfabric: Add 1.7.1 (#11141) 2019-04-09 18:38:15 -05:00
Matthias Diener
687a7db73f wget: add version 1.20.3 (#11148) 2019-04-09 18:37:04 -05:00
Denis Davydov
1f1ea2c859 intel: consolidate libs() in the base class (#11143) 
* intel: consolidate libs() in the base class

* white space

* flake8
 2019-04-09 13:54:21 -07:00
Denis Davydov
82455a30d0 openmpi: add 4.0.1 (#11126) 
* openmpi: add 4.0.1

* openmpi: enable-mpi1-compatibility for 4.0.1 and above

* remove preferred

* make 3.1.3 preferred
 2019-04-09 21:41:14 +02:00
Satish Balay
a9bf3bdd6a
xsdk@develop: enable hypre shared (even on OSX) and superlu-dist variant (#11131) 2019-04-09 08:42:44 -05:00
Owen Solberg
c6a7d0db03 cdhit - add new release 4.8.1 checksum (#11130) 2019-04-09 10:33:07 +02:00
Satish Balay
6e78730a97 mumps: add version 5.1.2 (#11132) 
Add patch for gfortran-8 runtime errors
 2019-04-09 10:28:41 +02:00
Patrick Gartung
aac3799d2c
Unset SPACK_INCLUDE_DIRS so the compiler wrapper does not prepend any -I flags. The assumption is that cmake will set the correct include flags. (#11129) 2019-04-08 14:30:22 -05:00
Michael Kuhn
db98f16382 zfp: Add 0.5.4 (#11016) 2019-04-08 09:11:28 +02:00
thelfer
3b5d7bfa99 Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). (#11109) 2019-04-08 09:09:14 +02:00
Cameron Smith
0e04410044 kokkos: update cuda conflict (#11110) 
see https://github.com/spack/spack/pull/10943#issuecomment-475303870
 2019-04-08 08:58:35 +02:00
Levi Baber
6e4b234d13 sra-toolkit new version (#11111) 2019-04-08 08:56:49 +02:00
Satish Balay
d11b1b18f0
netlib-scalapack: fix compatibility with mpi2 i.e openmpi-4 (#11124) 2019-04-07 10:01:54 -05:00
Abhinav Bhatele
ed66ccb6f2 ecp-proxy-apps: update version (#11119) 2019-04-06 15:33:29 -07:00
Satish Balay
90c7c74334
hypre: disable variant superlu-dist default (#11097) 2019-04-05 21:11:36 -05:00
Gregory Lee
af3e91926a fixes py-basemap package (#11104) 
* fixes py-basemap package
* remove basemap mpl_toolkit __init__.py
 2019-04-05 11:27:23 -07:00
Patrick Gartung
f1f582714c
Set Geant4 cmake module path environment variable in dependents. (#11112) 2019-04-04 13:09:13 -05:00
Marco Comparato
553acbbe3d xcb-util-wm: add m4 build system dependency (#11056) 2019-04-04 13:11:02 +02:00
Abhinav Bhatele
8da6593e43 miniamr: add develop version and update release (#11101) 
* miniamr: add develop version and update release

* change from url to git

* add url back
 2019-04-03 16:17:04 -06:00
Abhinav Bhatele
5f3620f7ac raja: add newer versions (#11102) 2019-04-03 12:09:45 -06:00
Abhinav Bhatele
b2a2c31883 laghos: update dependencies (#11100) 2019-04-03 11:22:40 -06:00
Abhinav Bhatele
af2d166adf AMG: update version (#11099) 2019-04-03 11:11:06 -06:00
Phil Carns
03bb6500f3 fio package: add optional libaio dependency (#11083) 2019-04-02 18:21:45 -07:00
Neil Flood
c3e5c9981a proj package: add versions 5.2.0 and 5.1.0 (#11079) 
* Add versions 5.2.0 and 5.1.0
* Avoid adding version 6.0.0: this version has a new API that is
  not compatible with older versions (and dependents may break with
  it)
* Added comment block explaining the problems with version 6.x
* Replace old datumgrid resource (1.7) with new (1.8)
* Add speculative sqlite dependency for when a 6.x version is added
 2019-04-02 18:18:56 -07:00
Elsa Gonsiorowski, PhD
9b5ce67f1e ross package: add version 7.0.1 (#11078) 
* add version 7.0.1
* replace md5 with sha256 for various versions.
* v7.0.1 fixes some environment hacking to properly find MPI and
  system architecture
 2019-04-02 17:50:41 -07:00
Ryan S. Elliott
3c641f47cd kim-api and openkim-models: version update and rename (#11065) 2019-04-02 17:44:24 -07:00
Jon Rood
0cb08e42f5 Trilinos: Add Tpetra_INST_INT_LONG_LONG to explicit template instantiation (#11060) 2019-04-02 17:38:52 -07:00
Seth R. Johnson
f237c81060 openmpi: Add stub mpirun script for openmpi~legacylaunchers+slurm (#11059) 
This adds a stub script for mpirun and other standard executables
when installing OpenMPI with slurm. The purpose is to make the
removal less of a surprise to administrators/users: it explains why
they were removed and how to restore them.
 2019-04-02 17:34:25 -07:00
Justin Stanley
3988732ef4 r-hoardr: new package at 0.5.2 (#11051) 2019-04-02 17:28:05 -07:00
Justin Stanley
6500310b08 r-roxygen2 package: added 6.1.1, more dependencies (#11045) 2019-04-02 17:27:04 -07:00
Justin Stanley
f459bba322 r-rhmmer: new package at 0.1.0 (#11050) 2019-04-02 17:25:55 -07:00
Justin Stanley
f5d61f8f58 r-commonmark: new package at 1.7 (#11049) 2019-04-02 17:22:42 -07:00
Justin Stanley
8710203e08 r-pkgload: new package at 1.0.2 (#11047) 2019-04-02 17:21:55 -07:00
Justin Stanley
6ac99f6275 r-desc: new package at 1.2.0 (#11048) 2019-04-02 17:10:24 -07:00
Justin Stanley
e094821a54 r-pkgbuild: new package at 1.0.3 (#11046) 2019-04-02 17:09:59 -07:00
Denis Davydov
ecde4502f2 arpack-ng package: add version 3.7.0 (#11041) 2019-04-02 17:08:16 -07:00
Gregory Lee
8625faefc9 mvapich2 package: add version 2.3.1 (#11037) 2019-04-02 17:07:06 -07:00
Dustin Lagoy
229ed5c228 netcdf-cxx package: set ldflags for hdf5 and netcdf (#11026) 
Ensure that netcdf-cxx uses the Spack-installed hdf5 and netcdf4
rather than system-installed versions.
 2019-04-02 17:04:09 -07:00
Jon Rood
bc4c372ebd nalu-wind package: require hypre without superlu-dist. (#11022) 2019-04-02 17:02:22 -07:00
Eric Martin
6d6bc8010f picard package: Add version 2.19.0 (#11018) 2019-04-02 17:01:17 -07:00
Matthias Wolf
9fc4489ee1 py-arrow and arrow: add version 0.12.1 (#11004) 
Also constrain the py-arrow version to depend on the same version
of arrow (e.g. 0.12.1 of py-arrow depends on 0.12.1 of arrow)
 2019-04-02 17:00:04 -07:00
Christoph Junghans
27a72cf7fe
branson: fix install (#11093) 2019-04-02 16:44:46 -06:00
Christoph Junghans
81f1bd7732
nut: fix install (#11092) 2019-04-02 16:38:03 -06:00
Christoph Junghans
7a28a61a59
miniqmc: fix install (#11091) 2019-04-02 16:23:37 -06:00