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Author SHA1 Message Date
Denis Davydov
7eb386e55e nwchem: add patches 2016-08-23 14:52:18 +02:00
Denis Davydov
5da9116c06 nwchem: add scalapack; extra steps for 32bit blas/lapack 2016-08-23 11:55:00 +02:00
Denis Davydov
a44beee172 nwchem: add new package 2016-08-23 02:22:44 +02:00
becker33
7f57405eac Merge pull request #1531 from davydden/pkg/ape 
ape: add new package
 2016-08-16 10:52:27 -07:00
becker33
e8afbfbce7 Merge pull request #1530 from davydden/pkg/octopus 
octopus: new package
 2016-08-16 10:49:41 -07:00
Denis Davydov
5dcc0f7802 ape: add new package 2016-08-16 19:42:32 +02:00
Denis Davydov
9509c10064 octopus: new package 2016-08-16 19:38:38 +02:00
Todd Gamblin
ae20e53cfb Merge pull request #1524 from epfl-scitas/bugfix/urls 
stripping the links to remove spaces and '\n'
 2016-08-15 13:42:38 -07:00
Nicolas Richart
37faa41b6f stripping the links to remove spaces and '\n' 2016-08-15 21:13:25 +02:00
Todd Gamblin
1e673bfa42 Don't assume spack is in the path when buildign docs. 2016-08-15 10:49:09 -07:00
Todd Gamblin
483e4116c0 Merge pull request #1509 from adamjstewart/docs/md5 
Update documentation for spack md5
 2016-08-12 09:19:36 -07:00
Todd Gamblin
e1c2ea5123 Merge pull request #1342 from adamjstewart/features/cgns 
Add CGNS package
 2016-08-12 09:19:07 -07:00
Adam J. Stewart
c815aed207 Update documentation for spack md5 2016-08-12 10:51:56 -05:00
becker33
ec7f58bf96 Merge pull request #1493 from xjrc/bugfix/nonbool-variants 
Bug Fix : Allow Packages to Have Variants w/ Non-Bool, Non-String Defaults
 2016-08-11 11:33:54 -07:00
becker33
1be63348b5 Merge pull request #1484 from mpbelhorn/olcf/correct_cce_compiler_name 
Olcf/correct cce compiler name
 2016-08-11 11:30:36 -07:00
Matt Belhorn
568305ddff Corrects Cray compiler name and adds missing version flag. 2016-08-11 13:56:21 -04:00
Todd Gamblin
cd6c370303 Merge pull request #1480 from adamjstewart/features/run-flake8 
Various improvements to run-flake8
 2016-08-11 10:31:43 -07:00
Adam J. Stewart
87d0a7c315 Always clean up tmp files, even if killed 2016-08-11 09:56:41 -05:00
Adam J. Stewart
09c9786fab Allow run-flake8 to be run from anywhere 2016-08-11 09:53:04 -05:00
Adam J. Stewart
1edfc82123 Run flake8 checks on changed uncommitted files 2016-08-11 09:53:04 -05:00
Todd Gamblin
e6a122417a Merge pull request #1491 from eschnett/eschnett/curl 
Update curl to 7.50.1
 2016-08-11 03:04:07 -07:00
becker33
f59653ac2c Merge pull request #1496 from LLNL/features/pep8-compliance 
PEP8 compliance
 2016-08-10 17:36:31 -07:00
Todd Gamblin
84e331c586 Remove unneeded noqa comments. 2016-08-10 16:33:39 -07:00
Todd Gamblin
db59f87e32 Update README.md for PEP8 2016-08-10 16:33:39 -07:00
Todd Gamblin
240f1fd223 Spack packages now PEP8 compliant. 2016-08-10 16:33:39 -07:00
Todd Gamblin
867121ca68 Move jsonschema files out of config.py to their own package. 2016-08-10 16:33:38 -07:00
Todd Gamblin
bf1072c902 Make Spack core PEP8 compliant. 2016-08-10 16:33:37 -07:00
Todd Gamblin
8061deb883 Merge pull request #1495 from LLNL/bugfix/module-init-deprecation-gh1494 
Fix superclass constructor args.
 2016-08-10 16:12:23 -07:00
Todd Gamblin
e7f4fd404d Fix superclass constructor for SpackNamespace objects. 2016-08-10 15:54:13 -07:00
Joseph Ciurej
aa860bf4df Fixed a bug that was making packages with non-bool default variants to crash. 2016-08-10 11:54:33 -07:00
Erik Schnetter
158deae625 Update curl to 7.50.1 2016-08-10 13:51:57 -04:00
becker33
cfde03e694 Merge pull request #1485 from hartzell/patch-6 
Fix typo 'flexbile' -> 'flexible'
 2016-08-09 15:34:51 -07:00
George Hartzell
4bca1c5440 Fix typo 'flexbile' -> 'flexible' 2016-08-09 15:13:08 -07:00
Todd Gamblin
d380d16427 Merge pull request #1482 from mpbelhorn/olcf/do_not_use_ssl_to_fetch_upstream_openssl 
Openssl package should not require openssl (https) to obtain source.
 2016-08-09 13:22:31 -07:00
Matt Belhorn
2be065418b Openssl package should not require openssl (https) to obtain source. 2016-08-09 15:57:07 -04:00
Todd Gamblin
a095fd517f Merge pull request #1015 from LLNL/features/faster-virtuals 
Faster virtuals and concretization
 2016-08-09 10:33:40 -07:00
becker33
fb9f6fe9b5 Merge pull request #1473 from epfl-scitas/packages/plumed_dependents 
plumed : added dependents (gromacs, cp2k)
 2016-08-09 09:14:33 -07:00
Todd Gamblin
9d4a36a62f Properly re-raise exceptions from lock context handler. 2016-08-09 02:25:09 -07:00
Todd Gamblin
0c75c13cc0 Flake8 fixes 2016-08-09 02:25:07 -07:00
alalazo
38dcd6bce9 qa : flake8 issues 2016-08-09 09:54:24 +02:00
Todd Gamblin
102ac7bcf1 Move provider cache to home directory and refactor Transactions 
Major stuff:

- Created a FileCache for managing user cache files in Spack.  Currently just
  handles virtuals.

- Moved virtual cache from the repository to the home directory so that users do
  not need write access to Spack repositories to use them.

- Refactored `Transaction` class in `database.py` -- moved it to
  `LockTransaction` in `lock.py` and made it reusable by other classes.

Other additions:

- Added tests for file cache and transactions.

- Added a few more tests for database

- Fixed bug in DB where writes could happen even if exceptions were raised
  during a transaction.

- `spack uninstall` now attempts to repair the database when it discovers that a
  prefix doesn't exist but a DB record does.
 2016-08-09 00:24:54 -07:00
alalazo
5362864cc9 plumed : fixed name clash on attribute 2016-08-09 09:24:36 +02:00
Massimiliano Culpo
15d9fb1879 plumed : adding dependents 
* cp2k : added plumed
* gromacs : patched pme load balancing
* gromacs : added plumed
 2016-08-09 09:23:53 +02:00
Todd Gamblin
2042e9a6d8 Fix bugs with sparse spec printing. 
- Make namespace, arch, and dependnecies show up in spec yaml
  only if they're set.

- Lost some of this functionality with deptypes
 2016-08-08 21:04:23 -07:00
Todd Gamblin
1339714eec Restore text output in verbose mode. 2016-08-08 21:04:23 -07:00
Todd Gamblin
5d690c9270 Make compiler command test last until caching is fixed. 
- global compiler cache breaks tests that come after this one.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
e5743db9b9 Fix issues with import order in tests. 
- modules weren't set properly as attributes in parent modules
 2016-08-08 21:04:23 -07:00
Todd Gamblin
d195576fba WIP 2016-08-08 21:04:23 -07:00
Todd Gamblin
5e5024342f Fix iterator invalidation issues. 2016-08-08 21:04:23 -07:00
Todd Gamblin
4de45c2684 fix scoping issue. 2016-08-08 21:04:23 -07:00