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5412 commits

Author SHA1 Message Date
Eric
7e9a369dec shortbred: Create new package (#7210) 2018-02-11 22:26:35 +01:00
Eric
fb7a5b279d glimmer: Create new package (#7208) 2018-02-11 22:22:34 +01:00
Axel Huebl
ee70551e10 xtensor-python (#7217) 
pybind11 bindings for seamlessly using xtensor in python
 2018-02-11 22:21:45 +01:00
Axel Huebl
f0aa4641f9 pybind11: 2.2.[1,2] & develop (#7216) 
Add the latest release of `pybind11` and its `develop` version.
 2018-02-11 18:00:22 +01:00
Axel Huebl
266a3593ce Xtensor 0.15.1 (#7215) 
Add the latest xtensor release and its dependencies.
 2018-02-11 17:56:08 +01:00
Eric
912e661056 new package: diffsplice (#7187) 2018-02-09 20:15:58 -08:00
Jed Brown
74ffd8b6be hpgmg package: add debug option and new version (#7175) 
This adds a static version of hpgmg (up to now only the latest commit
from the master branch was available). This also adds a debug variant
and sets optimization flags for ~debug when the compiler is gcc,
intel, or clang
 2018-02-09 19:01:49 -08:00
Jed Brown
ec162e69b2 petsc: use spack-built python for configure (#7176) 
Make sure to use Spack-built python to run petsc configure script
(in particular since petsc requires python@2.6:2.8)
 2018-02-09 13:11:03 -08:00
Geoffrey Oxberry
deb1a93f81 xbraid@2.2.0: new package (#7205) 2018-02-09 19:49:31 +01:00
Geoffrey Oxberry
5defe9ab00 git-imerge@1.1.0: new package (#7203) 2018-02-09 19:48:11 +01:00
Eric
0d34cdd77f py-checkm-genome: Create new package (#7200) 2018-02-09 19:37:16 +01:00
David Gardner
9d304ad585 fix petsc int64 metis dependencies (#7195) 2018-02-09 12:29:10 +01:00
Axel Huebl
e98bcaf3f5 libSplash: 1.7.0 (#7199) 
Adds the latest release of libSplash (1.7.0) and newly learned
CMake flags for explicit dependency control.

Modifies HDF5 dependency: non-MPI splash does (and did) never run
with a parallel HDF5, due to it's internal cross-dependencies on
MPI.
 2018-02-09 12:27:13 +01:00
Christoph Junghans
20225edde4
comd: more sane default (#7046) 
Avoid useless deps.
 2018-02-08 12:36:23 -05:00
Hans Pabst
8f5ece9ace LIBXSMM 1.8.3 (#7183) 2018-02-06 14:31:18 +01:00
Eric
26ff36f05f samblaster: Create new package (#7188) 2018-02-06 13:54:05 +01:00
Eric
167b5dc5d3 py-localcider: Create new package (#7189) 2018-02-06 13:52:37 +01:00
Geoffrey Oxberry
49e58992db oclint: new package (#7076) 2018-02-06 06:35:17 +01:00
Levi Baber
e25406c26b angsd: new version, and conflict for newer htslib with old version (#7122) 2018-02-05 18:33:12 +01:00
Mark Meredith
6c21d0bf31 Update fish url for fish 2.7.1 (#7089) 2018-02-04 09:05:44 +01:00
Thilina Rathnayake
970a4b2815 Update Nek5000 package to Version 17 (#7178) 
and minor polishing
 2018-02-03 17:05:14 -06:00
Erik Schnetter
927af929f4 highfive: Update to version 1.5 (#7041) 2018-02-03 10:22:03 +01:00
健美猫
caba978aa6 A new package: libcroco. (#7154) 2018-02-03 10:07:02 +01:00
Elizabeth Fischer
be5fa8f6c2 macOS Fix for GDAL (#7155) 2018-02-03 10:06:35 +01:00
Geoffrey Oxberry
4c9521b52b clingo@5.2.2: new package (#7091) 2018-02-03 10:05:06 +01:00
Eric
b6f1e0611c stringtie: add version 1.3.4a (#7164) 2018-02-03 09:52:51 +01:00
Eric
0b6d7f7397 new package: perl-exporter-tiny (#7030) 2018-02-02 10:28:45 -08:00
Feiyi Wang
27b033587b Efficient array of booleans, C extension (#7135) 2018-02-01 18:48:32 +00:00
Geoffrey Oxberry
514f0bf5c5 lz4 platform=darwin: fix dylib name (#7112) 2018-01-31 16:12:44 -08:00
Geoffrey Oxberry
7959c5ffd2 libdwarf: fix linking, fix build on Darwin (#7124) 
* libdwarf: fix linker flags

* libdwarf: fix header install names

* libdwarf: add zlib dependency

Prior to this commit, libdwarf was linked to the system zlib. This
commit links it to spack-installed zlib.

* libdwarf: fix dynamic library suffix for Darwin
 2018-01-31 16:12:25 -08:00
healther
bddc1556e1 symlink python3 to python (#7103) 
* symlink python3 to python

* otherwise not all autotools are smart enough

* Update package.py
 2018-01-31 16:11:25 -08:00
sknigh
ec7d069ba5 Added osu-micro-benchmarks@5.4 (#7149) 2018-01-31 16:10:14 -08:00
Brian Van Essen
c3034b53e3 Adding support for the Accelerate library on OS X (#7068) 
* Adding support for the Accelerate library on OS X

* Fixed guard on variable and added another depends_on statement to make sure that openblas gets selected even when openmp_blas variant is not turned on.
 2018-01-31 11:10:42 -08:00
Eric
fa65725263 fr-hit: Create new package (#7132) 2018-01-31 19:28:48 +01:00
Brian Van Essen
bc0f683e64 Protobuf fix (#7110) 
* Fixed a bug where when using shared libraries OS X does not set the RPATH correctly
 2018-01-31 09:39:53 -08:00
Brian Van Essen
06758fe5cb LBANN OS X (#7105) 
* Added a package for the MDAnalysis toolkit.

* Added some flags to fix the build RPATHs and OpenMP for LBANN on OS X.

* Fixed Hydrogen branch of Elemental to find OpenMP on OS X.
 2018-01-31 09:38:53 -08:00
Eric
60cc0b0b90 py-setuptools-git: Create new package (#7131) 2018-01-31 16:52:34 +01:00
Axel Huebl
cb5919b981 PNGwriter: 0.7.0 (#7026) 
Adds the latest release of PNGwriter, including
Windows and CMake config package support.
 2018-01-31 14:34:52 +01:00
sknigh
770100765f Added v1.4.2 to libfabric package (#7053) 2018-01-31 14:02:21 +01:00
Levi Baber
b59c3bcf02 abyss: added missing libtool dependency (#7054) 2018-01-31 14:01:49 +01:00
Axel Huebl
0d5ad7d843 openPMD-validator (#7064) 
Adds the new package for openPMD validator tools.
 2018-01-31 13:59:38 +01:00
Geoffrey Oxberry
ebaa106d7a ocaml@4.06.0: new version (#7078) 2018-01-31 13:49:17 +01:00
Geoffrey Oxberry
e8b4de7b4c re2c@1.0.3: new package (#7092) 2018-01-31 13:46:17 +01:00
Geoffrey Oxberry
b8b2c67b9c opam: new package (#7079) 2018-01-31 13:44:09 +01:00
Geoffrey Oxberry
148a2f0238 bmake@20171207: new package (#7099) 2018-01-31 13:42:41 +01:00
Geoffrey Oxberry
ae589c22f2 gcc: add version 7.3.0 (#7097) 2018-01-31 13:41:12 +01:00
Geoffrey Oxberry
804a6c5e1a lz4@1.8.1.2: new version (#7111) 2018-01-31 13:40:32 +01:00
Geoffrey Oxberry
a5758d97b3 libarchive@3.3.2: new version (#7113) 2018-01-31 13:39:58 +01:00
Denis Davydov
35746fdde1 rtags: add 2.17 and for now comment-out 2.12 (#7126) 2018-01-31 13:36:22 +01:00
lingnanyuan
cef4c2fa1c maq: Create new package. (#7133) 2018-01-31 13:12:43 +01:00