Commit graph

990 commits

Author SHA1 Message Date
Todd Gamblin
c59546fae0 Merge branch 'adamjstewart-features/libsigsegv' into develop 2016-03-05 15:15:08 -08:00
Todd Gamblin
7d847f4dc4 Minor tweaks to m4 -- be sure to add sigsegv args explicitly. 2016-03-05 15:14:21 -08:00
Todd Gamblin
07255da6e9 Merge branch 'features/libsigsegv' of https://github.com/adamjstewart/spack into adamjstewart-features/libsigsegv 2016-03-05 15:06:49 -08:00
Adam J. Stewart
220b6a9fee Make libsigsegv an optional dependency 2016-03-05 16:46:32 -06:00
Todd Gamblin
24f0757d82 Merge pull request #343 from adamjstewart/features/mpc
Add different URL for older source code
2016-03-05 14:37:43 -08:00
Todd Gamblin
3dd630d0a5 Make openssl a variant in libevent. 2016-03-05 14:33:23 -08:00
Todd Gamblin
0b864aacdc Merge branch 'eschnett/libevent' of https://github.com/eschnett/spack into eschnett-eschnett/libevent 2016-03-05 14:23:06 -08:00
Todd Gamblin
ac67f3b53e Merge pull request #487 from spakin/llvm-3.7.1
Added LLVM 3.7.1 support
2016-03-05 14:19:31 -08:00
Todd Gamblin
a9d7135c19 Merge pull request #495 from alfredo-gimenez/develop
Fixed unmatched function signature for do_fetch in jdk package
2016-03-05 14:16:09 -08:00
Mark Miller
f663d37da7 Adding zfp package. 2016-03-04 17:08:11 -08:00
Alfredo Gimenez
f90eaa5f46 Fixed unmatched function signature for do_fetch in jdk package 2016-03-04 14:53:08 -08:00
Adam J. Stewart
a7b918837e GNU m4 depends on libsigsegv 2016-03-04 15:22:28 -06:00
Elizabeth Fischer
648d08eb30 Update package.py
Updated homepage URL to general NetCDF homepage.
2016-03-04 12:05:43 -05:00
Elizabeth Fischer
b043c4a5b8 Update package.py
Removed comments on configure options.
2016-03-04 12:04:41 -05:00
Elizabeth F
0eb6ef2cd0 1. Removed fake MPI dependency from netcdf-cxx4 and netcdf-fortran.
2. Removed Fortran bootstrap variant from netcdf.  Users who need NetCDF Fortran interface should install netcdf-fortran.

3. Added result of ./configure --help on the netcdf-fortran.  Verified  the package has no additional options that should be exposed through Spack.
2016-03-04 11:14:52 -05:00
alalazo
a2af4940aa atlas : disabling parallel builds 2016-03-04 09:59:16 +01:00
alalazo
310099d888 atlas : provides blas and lapack 2016-03-04 09:32:01 +01:00
Scott Pakin
7183db1b7d Added LLVM 3.7.1 support 2016-03-03 11:30:57 -07:00
Luigi Calori
f5cc63156c Merge branch 'develop' of https://github.com/RemoteConnectionManager/spack into paraview_fix
merge upstream develop
2016-03-03 12:43:38 +01:00
citibeth
976d0240c4 Removed FIXMEs. 2016-03-02 18:58:47 -05:00
Todd Gamblin
8421dcb762 Merge pull request #452 from epfl-scitas/llvm/cleanup
Cleaned package : llvm
2016-03-02 01:32:08 -08:00
Todd Gamblin
9c565b155a Merge pull request #462 from xjrc/packages/silo
Update Package : Silo
2016-03-02 01:31:10 -08:00
Kelly (KT) Thompson
8174489787 + Provide two new variants for cmake:
1) +qt          - build the cmake-gui Qt application.
                  - adds a dependency on Qt.
  2) +sphinxbuild - build the html CMake documentation.
                  - adds a dependency on python and py-sphinx
2016-03-01 15:25:57 -07:00
citibeth
eb1d90a8cf Undid accidental change on this branch. 2016-02-29 23:31:54 -05:00
Elizabeth F
15ae92aae9 New packages added: blitz, netcdf-cxx4, netcdf-fortran, proj, udunits2 2016-02-29 23:21:44 -05:00
Elizabeth F
e414c5fdfb Added missing cmake dependencies 2016-02-29 23:21:08 -05:00
Ian Lee
67f327f805 Updated links to use new llnl.gov address 2016-02-28 19:47:19 -08:00
Luigi Calori
8f3ac9ac8b adding new version to praview, compiled with spack -d install -j 8 --keep-stage paraview@5.0.0+qt+python+tcl+opengl2%gcc@4.8.2 ^netcdf -mpi 2016-02-27 01:40:32 +01:00
Joseph Ciurej
30d9ca2bde Updated the silo package and added the '+fortran' variant. 2016-02-26 16:06:17 -08:00
Erik Schnetter
20845a739f Libevent depends on OpenSSL 2016-02-24 22:18:51 -05:00
alalazo
976ae91dcc llvm : removed duplicate version 2016-02-24 14:11:57 +01:00
Todd Gamblin
0d23ff92b0 Merge pull request #446 from LLNL/bugfix/python_config_compiler
modify compiler commands in python config files, fix for #431
2016-02-24 10:52:06 +09:00
Todd Gamblin
87610a5102 Merge pull request #448 from epfl-scitas/packages/gromacs
Added package : gromacs
2016-02-24 10:49:06 +09:00
Tom Scogland
5c8dd6c3c8 llvm trunk version
Adding a trunk version to the llvm package.  This has all the features
and requirements of the others, with the additional caveat that the llvm
project makes no guarantee that trunk on all repositories together will
necessarily make a working compiler.  It has been tested, and worked
with a version today, but not yesterday, so if you test keep that in
mind.
2016-02-20 17:23:55 -08:00
Todd Gamblin
97c3854c40 Merge pull request #422 from epfl-scitas/packages/openssl_url
openssl : url computation
2016-02-19 16:28:02 -08:00
alalazo
30c3047482 gromacs : added package 2016-02-19 12:39:38 +01:00
Todd Gamblin
3c1aa9a4ad Merge pull request #298 from epfl-scitas/refactoring/resource_directive
refactoring proposal : composite for Stage and FetchStrategy
2016-02-18 23:13:12 -08:00
Gregory L. Lee
19d10291bf modify compiler commands in python config files, fix for #431 2016-02-18 15:45:29 -08:00
Joseph Ciurej
6cd76d69c3 Fixed the "+shared" variant in the "hdf5" package. 2016-02-17 11:51:24 -08:00
Joseph Ciurej
0388093f7a Changed the hdf5 "+static" variant to become the "+shared" variant. 2016-02-16 17:33:19 -08:00
Joseph Ciurej
fca7ef2f7b Moved "Triangle" to "triangle" to be more in line with Spack package naming conventions. 2016-02-16 17:23:37 -08:00
Joseph Ciurej
8cab10214e Added the installation files for the "ExodusII" package.
Added the "+static" variant to "hdf5" to enable "ExodusII" support.
2016-02-16 16:43:24 -08:00
Joseph Ciurej
09254014b1 Added the installation files for the "TetGen" package. 2016-02-16 13:24:01 -08:00
Joseph Ciurej
3c8bbeafc7 Added the installation files for the "Triangle" package. 2016-02-16 13:01:18 -08:00
Joseph Ciurej
9a6221ea40 Added the installation files for the "ndiff" package. 2016-02-16 12:47:14 -08:00
Joseph Ciurej
db50f52bbc Adding the "Crypto++" package installation files. 2016-02-16 11:40:00 -08:00
Todd Gamblin
9e4671a4b4 Merge pull request #340 from adamjstewart/features/xz
Remove unnecessary URLs
2016-02-16 10:24:42 -08:00
Adam J. Stewart
bf162e60f1 Add latest version 2016-02-15 10:53:50 -06:00
Todd Gamblin
d8c0edcc81 Minor code cleanup for gcc. 2016-02-14 14:40:25 -08:00
Todd Gamblin
63911d4165 Merge pull request #354 from eschnett/eschnett/libedit
libedit depends on ncurses
2016-02-12 10:33:08 -08:00
alalazo
247a4bc751 mpich : added back MPI_F90 2016-02-12 12:15:09 +01:00
Massimiliano Culpo
70985170e5 qe : compiled on rhle6 2016-02-12 12:08:31 +01:00
Erik Schnetter
d7f674ce96 libedit depends on ncurses 2016-02-11 14:53:20 -05:00
alalazo
e8704433de espresso : added directories to search path 2016-02-11 18:57:40 +01:00
alalazo
b272a8881b espresso : fixed dependency handling 2016-02-11 18:18:05 +01:00
alalazo
ca3cdb4458 espresso : current working tree 2016-02-11 17:45:09 +01:00
alalazo
157ec210a7 espresso : synchronized with current develop 2016-02-11 13:05:31 +01:00
alalazo
e7454132a2 Merge branch 'develop' of https://github.com/LLNL/spack into packages/espresso 2016-02-11 13:03:47 +01:00
Todd Gamblin
bcf705b85e Merge pull request #432 from RemoteConnectionManager/paraview_fix
Paraview fix
2016-02-10 13:59:08 -08:00
Todd Gamblin
e23c260cb0 Merge pull request #402 from epfl-scitas/bugfix/netlib-scalapack
Bugfix: netlib-scalapack does not work with all versions of python
2016-02-10 11:40:31 -08:00
Luigi Calori
d7b3ed08ab add variant to select OpenGL2 Paraview backend 2016-02-10 15:40:05 +01:00
Luigi Calori
a1bd65550e fix a reported hash mismatch on netcdf-4.4.0 tar download 2016-02-10 15:17:54 +01:00
Luigi Calori
fe8aca630c add a variant to Qt for make dependency on mesa swlwctable 2016-02-10 14:58:00 +01:00
Luigi Calori
f729cf621a fixing qhull: seems that dependency on cmake is essential when it is used 2016-02-10 13:29:36 +01:00
alalazo
71a25a109a arpack-ng : added package 2016-02-05 11:00:37 +01:00
Todd Gamblin
15324c276f Merge pull request #426 from epfl-scitas/packages/suitesparse
Added package : SuiteSparse
2016-02-04 18:08:07 -07:00
alalazo
e2a95d4b50 eigen : added support for SuiteSparse 2016-02-04 16:27:26 +01:00
alalazo
e3a0e1881d suitesparse : basic implementation 2016-02-04 16:00:39 +01:00
alalazo
031c292136 dakota : basic installation 2016-02-04 13:48:21 +01:00
Adam J. Stewart
e1b3c286ef Add url for cmake, simplify url_for_version 2016-02-03 16:28:09 -06:00
Todd Gamblin
f38851b73d Merge remote-tracking branch 'github/pull/99' into develop
Conflicts:
	var/spack/repos/builtin/packages/cmake/package.py
2016-02-03 14:24:59 -07:00
Todd Gamblin
72ca311f17 Merge pull request #414 from epfl-scitas/issues/trilinos_385
fix : trilinos and dependencies
2016-02-03 11:42:53 -07:00
Todd Gamblin
c5455ceee5 Merge pull request #417 from mathstuf/hdf5-unsupported-flag
hdf5: always pass the unsupported flag
2016-02-03 08:56:30 -07:00
Todd Gamblin
5a3338323c Merge pull request #419 from adamjstewart/features/libgpg-error
Add latest libgpg-error version
2016-02-03 08:56:06 -07:00
Todd Gamblin
8a4b86dac9 Merge pull request #420 from adamjstewart/features/qhull
Add latest qhull version
2016-02-03 08:55:32 -07:00
Todd Gamblin
bc4bf71d8f Merge pull request #421 from adamjstewart/features/phonopy
Add Phonopy and PyYAML Python modules
2016-02-03 08:54:22 -07:00
Todd Gamblin
fe358e24e3 Merge pull request #423 from epfl-scitas/packages/opencv
Added package : OpenCV
2016-02-03 08:52:58 -07:00
alalazo
44c1b06609 opencv : added package 2016-02-03 13:36:25 +01:00
alalazo
587d356d6e openssl : added logic to version computation. The package now warns user if he depends on an old version of the library 2016-02-03 08:59:26 +01:00
Adam J. Stewart
d2fb1522a3 Add Phonopy and PyYAML Python modules 2016-02-02 12:54:24 -06:00
Adam J. Stewart
ab3698e3a4 Add latest qhull version 2016-02-02 11:42:31 -06:00
Adam J. Stewart
422e87badb Add latest libgpg-error version 2016-02-02 10:57:58 -06:00
Ben Boeckel
2b140b9a34 hdf5: default +unsupported to on
This flag can end up being required if a dependency tree ends up needing
hdf5+cxx+parallel, but nothing turns it on. Since the core spack code
puts this together, it ends up that the end user needs to specify it
manually. Instead, just assume an unsupported configuration (since these
*are* useful setups) and if anyone wants to seek upstream support,
masking the flag can be done.
2016-02-01 11:46:33 -05:00
alalazo
c8d2275c06 opencv : reverted url_for_version modifications 2016-02-01 10:56:48 +01:00
alalazo
e67507478a opencv : reverted url_for_version modifications 2016-02-01 10:55:39 +01:00
alalazo
b0707a61e7 Merge branch 'develop' of https://github.com/LLNL/spack into issues/trilinos_385 2016-02-01 10:54:17 +01:00
Todd Gamblin
9eb037bc87 Merge pull request #415 from adamjstewart/features/hwloc
Checksum fix for hwloc
2016-02-01 02:41:47 -07:00
Todd Gamblin
140510fedf Merge pull request #408 from adamjstewart/features/fish
Modify url settings for fish package
2016-02-01 02:39:54 -07:00
alalazo
360abb070a netcdf : fixed typo in configure option
openssl : smarter URL computation
2016-02-01 08:33:03 +01:00
Gregory L. Lee
3bf6fed7b3 updated openssl version 2016-01-29 11:29:27 -08:00
Adam J. Stewart
d14d50beb6 Checksum fix for hwloc 2016-01-29 09:47:57 -06:00
Abhishek Kulkarni
74225544c6 Rename the hpx package to hpx-5. 2016-01-29 10:35:54 -05:00
Massimiliano Culpo
cd54793913 Cleaning up 2016-01-29 11:42:06 +01:00
alalazo
b574c4ad51 trilinos : updated package to meet changes in dependencies 2016-01-29 08:57:07 +01:00
Abhishek Kulkarni
5907cc0de5 Merge remote-tracking branch 'upstream/develop' into develop 2016-01-29 00:32:34 -05:00
Abhishek Kulkarni
2bea7f8d69 Add the HPX-5 package. 2016-01-29 00:29:20 -05:00
Todd Gamblin
9fb5ddbb4c Merge pull request #411 from adamjstewart/features/pnetcdf
Add PnetCDF and M4 packages
2016-01-28 20:52:59 -07:00
David Beckingsale
d9548c01af Correct package URL 2016-01-28 15:47:37 -07:00
Adam J. Stewart
4f34031534 Add PnetCDF and M4 packages 2016-01-28 15:41:58 -06:00
David Beckingsale
7e65f4da82 Add the Caliper package 2016-01-28 13:22:56 -08:00
Gregory L. Lee
0e52c30bb8 added py-wheel package 2016-01-28 10:42:46 -08:00
Adam J. Stewart
06f3cc33ba Modify url settings for fish package 2016-01-28 11:41:12 -06:00
alalazo
07bb6fef01 resource directive : now works with all the fetch strategies available 2016-01-28 10:58:56 +01:00
Adam J. Stewart
6122642b81 More NetCDF changes 2016-01-27 16:16:33 -06:00
Nicolas Richart
f1d8f30342 Bug fix: precedence in % operator seems to change depending in the python version 2016-01-27 10:54:41 +01:00
Todd Gamblin
90750f59c1 Merge pull request #400 from adamjstewart/features/netcdf
Extensive modifications to NetCDF package
2016-01-26 19:31:14 -07:00
Tom Scogland
23af31cb1c adding the cmocka unit testing library 2016-01-26 17:55:32 -08:00
Todd Gamblin
c344b30fc4 Merge pull request #342 from adamjstewart/features/hwloc
Add url_for_version function to calculate url
2016-01-26 16:01:17 -08:00
Todd Gamblin
d7bd023afa Merge pull request #339 from adamjstewart/features/hdf
Add HDF package
2016-01-26 15:51:57 -08:00
Adam J. Stewart
81ccba202c Make szip a variant 2016-01-26 15:38:22 -06:00
Adam J. Stewart
c6bb00085f Extensive modifications to NetCDF package 2016-01-26 12:04:48 -06:00
Adam J. Stewart
1d18f2031c Add szip variant 2016-01-25 14:57:33 -06:00
Matthew LeGendre
fa888a4ba1 Merge branch 'develop' into features/external-packages
Conflicts:
	lib/spack/spack/cmd/mirror.py
	lib/spack/spack/concretize.py
	lib/spack/spack/config.py
	lib/spack/spack/spec.py
	lib/spack/spack/stage.py
	var/spack/packages/mvapich2/package.py
2016-01-25 10:52:17 -08:00
Todd Gamblin
b6731ea47c Merge pull request #336 from scheibelp/features/boost-additive-libs
additive compilation of boost libraries
2016-01-22 14:09:19 -08:00
Peter Scheibel
a653d2f5e2 Slightly more robust approach for setting defaults for noinstall_libs 2016-01-22 13:43:16 -08:00
Peter Scheibel
9f99ee61c7 1. added default install libs (atomic, test, locale, program_options)
2. clarify comment for default_noinstall_libs
3. renamed regex_icu variant to icu_support (both the locale and regex libs can
use it)
4. explicitly set b2 install ICU_PATH when regex_icu is activated
2016-01-22 13:25:45 -08:00
Alfredo Gimenez
10de5a3ec7 Patch fix for boost@1.60.0%gcc@4.4.7 2016-01-22 13:02:18 -08:00
Peter Scheibel
4a55b97d11 Fixed reference 2016-01-22 12:37:12 -08:00
Peter Scheibel
2e58bc3113 Sticking with additive approach but now most libraries are installed by default. 2016-01-21 19:57:49 -08:00
Erik Schnetter
2f70c842b8 Disable patch that was merged into upstream in 1.10.2 2016-01-21 14:13:39 -05:00
Erik Schnetter
6b3f023d98 Update OpenMPI to 1.10.2 2016-01-21 14:05:16 -05:00
Todd Gamblin
10848c2e9a Refactor args for Executable.__call__
- simplify output, error, and input redirection
- `return_output=True` is now `output=str`
- `return_output=True` will still work for the time being but is
  deprecated.

- previously you could say `return_output=True` and `output=<stream>`,
  which wouldn't actually write to the stream.  Now you actually can't
  specify erroneous cases since there is only one parameter with
  mutually exclusive options..
2016-01-21 10:46:33 -08:00
Todd Gamblin
25f7dbd3e9 Merge pull request #384 from epfl-scitas/packages/elpa
added package : elpa
2016-01-21 09:14:28 -08:00
Adam J. Stewart
03d5ee6738 Remove constraint on dependency version 2016-01-21 10:02:33 -06:00
Adam J. Stewart
ea9d0c0263 Remove constraints on dependency versions 2016-01-21 09:58:47 -06:00
Adam J. Stewart
950246b331 Remove constraint on dependency version 2016-01-21 09:54:24 -06:00
alalazo
d9b344a247 Merge branch 'develop' of https://github.com/LLNL/spack into packages/elpa 2016-01-21 12:05:28 +01:00
Todd Gamblin
f0a6bfa23c Merge pull request #376 from adamjstewart/features/mvapich2
Various updates to MVAPICH2 package
2016-01-21 01:59:35 -08:00
Todd Gamblin
dab65e4ba6 Merge pull request #380 from epfl-scitas/packages/mumps
Adding packages MUMPS and ScaLAPACK
2016-01-21 01:58:57 -08:00
alalazo
785c01218f elpa : added missing dependencies 2016-01-21 10:06:43 +01:00
alalazo
88f2a1d43a Merge remote-tracking branch 'scitas/packages/mumps' into packages/elpa 2016-01-21 08:34:44 +01:00
alalazo
a8132470e4 Merge branch 'develop' into packages/elpa 2016-01-21 08:33:59 +01:00
Nicolas Richart
b71b478a36 Minor correction to install mumps+mpi 2016-01-20 18:31:02 +01:00
alalazo
19caac69d8 openmpi : turned torque support into a variant (default false)
hdf5 : fixed a few bugs, removed suspicious macro deinition, etc.
2016-01-20 15:22:49 +01:00
Nicolas Richart
974fc65e0f renaming packages to follow changes on develop 2016-01-20 14:38:55 +01:00
Nicolas Richart
65f65ec4e4 Adding MUMPS and ScaLAPACK 2016-01-20 14:21:44 +01:00
alalazo
ab27fdc692 elpa : commit partial package. Blocked by missing scalapack 2016-01-20 09:35:15 +01:00
Peter Scheibel
965af75d23 Merge branch 'develop' into features/boost-additive-libs 2016-01-19 17:27:18 -08:00
Adam J. Stewart
98706d31dc Various updates to MVAPICH2 package
Use url_for_version function to specify urls
Add version 2.2b
Add dedicated MRAIL variant
Fix typo
Make fortran compiler flags more specific
2016-01-19 12:46:15 -06:00
Todd Gamblin
9be37da077 Merge pull request #373 from adamjstewart/features/mpich
Add verbs variant, remove deprecated configure flags
2016-01-19 08:59:59 -08:00
alalazo
e121faffa1 eigen : added package 2016-01-19 17:26:26 +01:00
Adam J. Stewart
0d42cdaffd Merge branch 'develop' into features/hdf 2016-01-19 10:09:25 -06:00
Adam J. Stewart
530f8e5b26 Merge branch 'develop' into features/hdf
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
2016-01-19 10:07:21 -06:00
Adam J. Stewart
fbab88b0e1 Merge branch 'develop' into features/xz
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
2016-01-19 10:05:50 -06:00
Adam J. Stewart
58f18d5b12 Merge branch 'develop' into features/hwloc
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
2016-01-19 10:01:42 -06:00
Adam J. Stewart
d20ca32440 Merge branch 'develop' into features/mpc
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
2016-01-19 09:58:07 -06:00
Adam J. Stewart
f48fc0d8b1 Revert deprecated configure flags 2016-01-19 09:43:28 -06:00
Adam J. Stewart
16f1267c29 Merge branch 'develop' into features/mpich
* develop: (43 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  update compiler config test.
  add sanity check on config write as well as validation on read.
  Add jsonschema validation for config files.
  Make text wrapping off by default in tty, add a kwarg for it.
  add/remove/list working for new config format.
  Add Python 3 aliases to our argparse backport.
  All tests that call concretize() need to be MockPackagesTests.
  Fix bug in tests.
  Rework mirror configuration.
  Rework compiler configuration and simplify config.py logic.
  Remove mock_configs; tests no longer modify spack home directory.
  ...
2016-01-19 09:37:53 -06:00
Todd Gamblin
01c5b53ba1 Make libxcb compile with gcc 4.9. 2016-01-19 01:16:15 -08:00
Todd Gamblin
047f1b9de9 disable parallel install for glib (found races) 2016-01-19 01:16:15 -08:00
Todd Gamblin
b7b4faff96 disable cairo-trace, which is incompatible with older libiberty.h. 2016-01-19 01:16:14 -08:00
Todd Gamblin
67ea7ce0ab Fix LaunchMon on newer gcc versions. 2016-01-19 01:16:14 -08:00
Todd Gamblin
8d6342c53d Merge branch 'mplegendre-multi_pkgsrc_roots' into develop
- This moves var/spack/packages to var/spack/repos/builtin/packages.

- Packages that did not exist in the source branch, or were changed in
  develop, were moved into var/spack/repos/builtin/packages as part of
  the integration.

Conflicts:
	lib/spack/spack/test/unit_install.py
	var/spack/repos/builtin/packages/clang/package.py
2016-01-19 01:16:08 -08:00
Adam J. Stewart
58162ec170 Add verbs variant, remove deprecated configure flags 2016-01-18 16:03:41 -06:00
Todd Gamblin
d802165e03 Merge pull request #355 from eschnett/eschnett/llvm
LLVM depends on cmake, and does not depend on isl
2016-01-17 19:24:17 -08:00
Todd Gamblin
4bab6f9fdb Update cmake package to use http in all URLs. 2016-01-17 18:55:36 -08:00
Todd Gamblin
afcd5420ee Merge pull request #356 from eschnett/eschnett/tar
New package GNU tar
2016-01-17 18:49:14 -08:00
Todd Gamblin
85e8f8eb6a Merge pull request #353 from eschnett/eschnett/ncurses
Install ncurses properly
2016-01-17 18:49:00 -08:00
Todd Gamblin
635e053e6d Merge pull request #358 from adamjstewart/features/openmpi
Add psm and verbs variants
2016-01-17 18:45:13 -08:00
Todd Gamblin
77c6038711 Merge pull request #370 from eschnett/eschnett/netcdf-cmake
Netcdf requires cmake >=2.8.12
2016-01-17 18:31:56 -08:00
Todd Gamblin
a473830533 Merge pull request #367 from eschnett/eschnett/mbedtls-cmake
Mbedtls depends on cmake
2016-01-17 18:26:07 -08:00
Todd Gamblin
99390be127 Merge pull request #366 from eschnett/eschnett/libtool-2.4.6
Update libtool to 2.4.6
2016-01-17 18:25:55 -08:00
Todd Gamblin
c20f8eb5b3 Merge pull request #365 from eschnett/eschnett/julia-0.4.3
Update Julia to 0.4.3
2016-01-17 18:25:45 -08:00
Todd Gamblin
1a145f68a7 Merge pull request #362 from eschnett/eschnett/binutils-osx
Make binutils build on OS X
2016-01-17 18:25:24 -08:00
Erik Schnetter
81f1311a60 Netcdf requires cmake >=2.8.12 2016-01-17 14:57:08 -08:00
Erik Schnetter
f4b87e2967 Mbedtls depends on cmake 2016-01-17 11:05:15 -05:00
Erik Schnetter
60656b6255 Update libtool to 2.4.6 2016-01-17 11:03:40 -05:00
Erik Schnetter
e585a5d8a3 Update Julia to 0.4.3 2016-01-17 11:02:30 -05:00
Erik Schnetter
36a428b8fc Make binutils build on OS X
Binutils defines several global variables multiple times. Apparently this works fine under Linux, but it leads to a linker error on Darwin. Rename these global variables.

Note that binutils on OS X is still not really useful, as important tools (e.g. ld) are not supported.
2016-01-17 10:49:13 -05:00
Peter Scheibel
d22cf1aed1 1. raise an exception if the multithreaded and singlethreaded options are both
disabled
2. invoke the b2 installation once for each enabled threading option (apparently
the install fails if a single call has both options enabled for mpi)
2016-01-15 18:07:41 -08:00
Adam J. Stewart
eac795abc3 Add verbs and psm variants 2016-01-15 15:09:36 -06:00
Ben Boeckel
4f60948bff py-matplotlib: depend on freetype
Probably a missed dependency, but appeared on OS X.
2016-01-15 16:04:49 -05:00
Ben Boeckel
c3bf1a7741 py-numpy: make blas/lapack optional dependencies
OS X is having trouble building these libraries, so make them optional
dependencies.
2016-01-15 16:03:51 -05:00
Ben Boeckel
f6680a0051 qhull: apply patch to work with libc++'s standard library
Only seen on OS X with clang right now.
2016-01-15 16:02:35 -05:00
Nicola Varini
7fc308ed26 Update to version 5.3 2016-01-15 17:04:25 +01:00
Nicola Varini
7d0256c9fb Quantum-ESPRESSO package 2016-01-15 10:27:38 +01:00
Erik Schnetter
0a993cd9d7 New package GNU tar 2016-01-14 20:44:51 -05:00
Erik Schnetter
3e703cc281 LLVM depends on cmake, and does not depend on isl
Add cmake requirement.

Remove gmp and isl requirements. Using an external isl leads to a build failure for me on a fairly standard Fedora Linux workstation. The Spack package file says that isl is required for polly, however, the polly documentation states that as of LLVM 3.7, polly includes isl, and has no external dependencies any more.
2016-01-14 17:52:28 -05:00
Erik Schnetter
aa3897a880 Install ncurses properly
Currently, ncurses's include files are installed into two separate subdirectories, "install/ncurses" and "install/ncursesw". The second level of subdirectories ("ncurses" and "ncursesw") are non-standard. I checked several systems to confirm this, and ncurses examples on the web also simply contain "#include <ncurses.h>" instead of "#include <ncurses/ncurses.h>", which would be necessary to use the currently installed ncurses packages. For example, this also breaks llvm, which uses ncurses, but does not expect the second level of subdirectories.

I am now using the option "--enable-overwrite", which installs the header files directly in to ".../include". I also enable "widec" support all the time. These options are e.g. similar to the ones used by MacPorts, and I confirm that they make the llvm package build (which didn't build before).
2016-01-14 17:40:11 -05:00
Todd Gamblin
1268b41570 Merge pull request #293 from trws/llvm-rework
Llvm rework
2016-01-14 01:13:39 -08:00
Todd Gamblin
93fdb06d7d Merge pull request #273 from epfl-scitas/packages/R
R : updated package
2016-01-14 00:13:27 -08:00
Adam J. Stewart
244ee673d6 Add latest version 2016-01-13 11:44:51 -06:00
Todd Gamblin
a56575a6d2 Merge pull request #324 from eschnett/eschnett/openblas-lapack
Ensure that OpenBLAS provides a file liblapack.a
2016-01-13 08:26:26 -08:00
Erik Schnetter
aa1f96c73b New package "cereal" 2016-01-13 11:21:52 -05:00
alalazo
78b57787fa gmsh : added hdf5 support 2016-01-13 12:22:59 +01:00
alalazo
767f286a9f gmsh : added fltk support 2016-01-13 11:26:10 +01:00
alalazo
ffaa4a8922 gmsh : added package with basic compile options 2016-01-13 10:05:19 +01:00
Todd Gamblin
8ead7783ab Merge pull request #345 from eschnett/eschnett/petsc-python-2
Correct Python version constraint syntax
2016-01-12 14:26:28 -08:00
Erik Schnetter
8eb16ba02d Merge branch 'develop' into eschnett/petsc-python-2
# Conflicts:
#	var/spack/packages/petsc/package.py
2016-01-12 14:36:37 -05:00
Adam J. Stewart
a6f2cc9cbf Add required dependency version 2016-01-12 13:28:48 -06:00
Adam J. Stewart
180c673c78 Add different URL for older source code 2016-01-12 13:21:53 -06:00
Adam J. Stewart
6985d2c914 Add url_for_version function to calculate url 2016-01-12 13:00:05 -06:00
Adam J. Stewart
5520ce3c4a Removed unnecessary URLs 2016-01-12 12:19:03 -06:00
Adam J. Stewart
9b3e0255f4 Add HDF package 2016-01-12 11:55:42 -06:00
Todd Gamblin
4ac530d289 Merge pull request #314 from eschnett/eschnett/libpciaccess-configure
Build libpciaccess from tarball
2016-01-12 09:14:19 -08:00
Todd Gamblin
5bdc6e53e5 Merge pull request #323 from eschnett/eschnett/openssl-apps
Ensure the APPS environment variable is not set when building OpenSSL
2016-01-12 09:13:50 -08:00
Todd Gamblin
dd0aa90aa1 Merge pull request #328 from eschnett/eschnett/lua-readline
Resolve readline/ncurses dependency when building Lua
2016-01-12 09:13:21 -08:00
Todd Gamblin
1a3c0063a5 Merge pull request #329 from epfl-scitas/packages/cmake
cmake : added variant that activates the build of the ncurses gui
2016-01-12 09:12:06 -08:00
alalazo
1f78b9c7af parmetis : removed leftover import statement 2016-01-12 16:59:47 +01:00
alalazo
da8b08b5fe parmetis : used spack install method instead of shutil.copy 2016-01-12 14:55:29 +01:00