Commit graph

9801 commits

Author SHA1 Message Date
健美猞猁
748c552992 Bump nektar to 5.0.0. (#14288) 2019-12-24 10:01:16 -06:00
Gregory Lee
99dee90372 added master branch version to mpip (#14284) 2019-12-23 17:24:19 -06:00
Christoph Junghans
643cc95055 gromacs: add v2019.5 (#14285) 2019-12-23 17:24:03 -06:00
Nicholas Sly
9573fa2299 Added conflict with %pgi in libpciaccess package.py with relevant links in comments. (#14281) 2019-12-23 15:31:59 -06:00
Piotr Luszczek
ae8a72c0da netlib-scalapack: Add int overflow patch (#14276) 2019-12-23 13:06:29 -06:00
Adam J. Stewart
e2ec1c76ce
Add py-boto3 1.10.44 (#14271) 2019-12-22 21:39:25 -06:00
Timo Heister
fa0d710626 add new package : libdap4 (#14267) 2019-12-22 21:36:47 -06:00
Adam J. Stewart
ded5cbec70
Add py-numpy 1.18.0 (#14269) 2019-12-22 21:36:28 -06:00
Adam J. Stewart
0950442ea0
Add awscli 1.16.308 (#14270) 2019-12-22 21:36:14 -06:00
Adam J. Stewart
013ff54731
Add py-botocore 1.13.44 (#14272) 2019-12-22 21:35:39 -06:00
Piotr Luszczek
2a3bf87484 Add new release and remove extraneous patches (#14273) 2019-12-22 18:10:19 -08:00
Glenn Johnson
3690bc44bd Set full xiar path when building cp2k with intel compiler (#14268) 2019-12-22 16:19:12 -06:00
justbennet
b83365c945 Updating preferred OpenMPI version to 3.1.5 (#14266) 2019-12-22 11:59:21 -08:00
Axel Huebl
249c1d9d81 openPMD-api: 0.10.3 (#14265)
Add latest release.
2019-12-22 10:01:28 -06:00
xfzhao
a10253a667 new module beagle (#14257) 2019-12-21 18:22:56 -06:00
Sajid Ali
8fe2c0a4fe Bump py-slepc4py version, update url (#14264)
* version bump

	modified:   var/spack/repos/builtin/packages/py-slepc4py/package.py

* slepc: update URL
slepc4py: add 3.11.0 and update maintainers

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2019-12-21 18:22:40 -06:00
Sajid Ali
8522d1f0cf build bazel with jdk (#14258)
* build bazel with jdk

* Flake 8

* Fix typo
2019-12-20 19:40:05 -06:00
Adam J. Stewart
87d0ac804e
npm: add Python 3 support (#14255) 2019-12-20 16:38:35 -06:00
Massimiliano Culpo
497fddfcb9 Fetching from URLs falls back to mirrors if they exist (#13881)
Users can now list mirrors of the main url in packages.

- [x] Instead of just a single `url` attribute, users can provide a list (`urls`) in the package, and these will be tried by in order by the fetch strategy.

- [x] To handle one of the most common mirror cases, define a `GNUMirrorPackage` mixin to handle all the standard GNU mirrors.  GNU packages can set `gnu_mirror_path` to define the path within a mirror, and the mixin handles setting up all the requisite GNU mirror URLs.

- [x] update all GNU packages in `builtin` to use the `GNUMirrorPackage` mixin.
2019-12-20 14:32:18 -08:00
Nichols A. Romero
1b93320848 PGMATH library symbols patch (#14254)
* Add symbols patch

* Apply symbols patch to pgmath

* Add github issue number for symbols patch.

* Add naromero77 as a maintainer.

* Patch only applied to March 2019 release and master.
2019-12-20 16:23:38 -06:00
Adam J. Stewart
abf8e09fe5
Add py-pyinstrument package (#14241) 2019-12-20 16:17:22 -06:00
Adam J. Stewart
73dbda8c5a
node-js: add Python 3 support (#14242)
* node-js: add Python 3 support

* Update node-js, fix Python 3 support in v12
2019-12-20 16:17:04 -06:00
Hadrien G
3dd59c569e Latest versions of CMake need a hand for Python detection (#14247) 2019-12-20 14:52:53 -06:00
Hadrien G
3bb9d0feb4 root: Record that old versions of ROOT don't support modern GCC (#14250)
* Record that old versions of ROOT don't support modern GCC

* Well, actually I don't know about 6.07

* Fix typo and follow odd version recommendation from @chissg
2019-12-20 12:55:16 -06:00
Nichols A. Romero
f408535f2d QE Update Dec 2019 (#14238)
* Add QE 6.5

* Support for serial HDF5 case with serial (no mpi) QE is now supported but requires a patch for 6.4.1 and 6.5.

* Add naromero77 as a maintainer.
2019-12-20 12:53:36 -06:00
Hadrien G
97afe560d5 Do not apply the unuran patch to ROOT 6.06/xy, it is not compatible (#14245) 2019-12-20 12:53:20 -06:00
Adam J. Stewart
d01ceabca2
Add py-pyinstrument-cext package (#14240) 2019-12-20 11:59:18 -06:00
Hadrien G
71d10d76dc Adding myself as a ROOT maintainer (#14251) 2019-12-20 11:48:54 -06:00
Andras Wacha
72eef17ff9 Added hwloc dependency to gromacs (#14244) 2019-12-20 08:49:35 -07:00
Patrick Schratz
48fb5b8b17 R: added v3.6.2 (#14248) 2019-12-20 16:25:09 +01:00
Hadrien G
a5cab03d10 ACTS: added v0.13.0 and v0.12.1 (#14246) 2019-12-20 16:05:48 +01:00
Ethan Stam
e89915eacc New package: cinema_lib (#14231)
* Start cinema package

* Remove boilerplate and add description

* Formatting for pep8

* Correct milestone tag

* 'master' instead of 'develop'

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Two variants, both with numpy and other small changes

* When +image for scikit

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-19 19:37:22 -06:00
Chris Green
530a67c280 root: Add chissg as maintainer. (#14235) 2019-12-19 17:27:35 -06:00
Adam J. Stewart
01edc28fde
Add py-scipy 1.4.1 (#14230) 2019-12-19 14:33:20 -06:00
Adam J. Stewart
ae52f41448
dmd: setup dependent build environment (#14198)
* dmd: setup dependent build environment

* Fix call signature of setup_dependent_build_environment
2019-12-19 12:47:04 -06:00
Hadrien G
5940ec0d74 Remove python2-ism in root package (#14223) 2019-12-19 12:45:09 -06:00
Todd Gamblin
531f370e0d possible_dependencies() now reports missing dependencies
- Add an optional argument so that `possible_dependencies()` will report
  missing dependencies.
- Add a test to ensure it works.
- Ignore missing dependencies in `possible_dependencies()` by default.
2019-12-18 21:10:31 -08:00
t-karatsu
92c2c47f72 aspell: Rename 'darwin.patch' and apply it to all targets. (#14206) 2019-12-18 17:10:05 -06:00
Greg Sjaardema
8da6fcf324 NETCDF-C: Add latest release 4.7.3 (#14214)
Added checksum for latest NetCDF release 4.7.3
2019-12-18 17:09:50 -06:00
Greg Becker
67603d71bc Add dependencies for hpcrypt (#8067)
* Add dependencies for hpcrypt

* address review comments

* flake

* license-fix

* fix checksums

* Update py-hvace homepage

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* update py-hvac url

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-18 17:09:26 -06:00
t-karatsu
135cf4835f amrex: Define module directry when compiling with Fujitsu compiler. (#14124) 2019-12-18 13:47:21 -06:00
Michael Kuhn
52894f5c71 Fix pkgconfig dependencies (#14175)
pkgconfig is the virtual provider, pkg-config is an implementation.
2019-12-18 13:46:45 -06:00
Greg Sjaardema
5052ce803d PNETCDF: Update to include latest release 1.12.1 (#14213)
Added checksum for recent 1.12.1 release.
2019-12-18 13:45:19 -06:00
Greg Sjaardema
99a19596c4 SEACAS: Update to include new versions (#14212)
Added checksum and tag name for last two SEACAS releases.
2019-12-18 13:45:03 -06:00
Adam J. Stewart
fa5e8aa876
wireshark: remove non-existing dependencies (#14209) 2019-12-18 12:55:15 -06:00
Adam J. Stewart
09b17ea147
py-scikit-optimize: fix test dependency (#14210) 2019-12-18 12:47:35 -06:00
Marc Mengel
0607579fd3 New package: py-zc-lockfile (#13586)
* package py-zc-lockfile

* package py-zc-lockfile

* autopep8, docutils cleanup

* Update var/spack/repos/builtin/packages/py-zc-lockfile/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-zc-lockfile/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* dependency at wrong level

* license bits

* Remove py-zc-buildout dependency
2019-12-18 12:17:39 -06:00
darmac
201a62d957 add new package : filebench (#14158)
* add new package : filebench

* remove alpha version and duplicated autoheader cmd

* refine automake cmd in sh()

* refine filebench url as a stable tarball link
2019-12-18 11:30:10 -06:00
darmac
5a1b6e1cfc add new package : hama (#14159)
* add new package : hama

* mv hama/hama/package.py to hama/package.py
2019-12-18 11:29:48 -06:00
darmac
6e12c49c28 Hbase (#14161)
* add new package : hbase

* add hbase description

* refine hbase version and depends
2019-12-18 11:29:30 -06:00
Chris Green
ae3eac0b19 root: Rationalize and improve version, variant and ROOT option handling. (#14203)
* root: Rationalize and improve version, variant and ROOT option handling.

* Completely re-vamp CMake option handling for readability and maintainability:
  * Three categories of option: control, builtin and feature, alphabetically sorted.
  * Each option is described as a list: an option name followed by an optional value which is either Boolean or a string representing the name of a variant. If the value is omitted, it defaults to the option name.
  * New functions `_process_opts()` and `_process_opt()` (nested) to turn all supplied option/value specifications into CMake arguments.
  * Remove overly-terse per-option comments in favor of (much) more comprehensive notes in README.md.
* Variants and conflicts:
  * Remove `test` variant in favor of pegging ROOT `testing` option to the value of `self.run_tests` since the install is unaffected, per ROOT developer.
  * Remove commented-out and never-functional variants: `asimage`, `avahi`, `kerberos`, `ldap`, `libcxx`, `odbc`, `oracle`, `pythia8`, `xinetd`.
  * New variant `vmc` (default `OFF`) to control the Virtual Monte Carlo interface.
  * Conflict: `+opengl` is incompatible with `~x`.
  * Conflict: `http` is now an unconditional conflict due to dependency issues (see README.md).
* Remove commented-out and non-existent dependencies `avahi`, `kerberos`, `ldap`, `libcxx`, `odbc`, `oracle`, `pythia`, `veccore` (per #13949).
* New and changed options:
  * Option `pch` was inadvertently set to `OFF` due to its dependence on a nonexistent variant `pch`. As it happens its value is ignored in the ROOT configuration handling, so there was no deleterious effect. It has been fixed to `ON` to better reflect actual behavior pending enablement of tuntime C++ modules.
* Add new versions 6.18.0{0,2,4}:
  * Require CMake 3.9 for 6.18.00+.
  * Add conflicts for variants `qt4` and `table` representing ROOT build options for which support was discontinued. Remove redundant conflict on \@master.
  * C++ standard is now specified with `-DCMAKE_CXX_STANDARD=X` rather than `-Dcxx=X`.
* Remove old version 5.34.38 (wrong build system).

See README.md for more details of option-related changes.

* Flake8

* `rpath` option is a control option rather than a feature.
2019-12-18 11:14:47 -06:00
Jimmy Tang
3511245ca4 Add abseil-cpp package (#14208) 2019-12-18 09:33:44 -06:00
Hadrien G
9583bde739 Add new DD4hep release and some forgotten build requirements (#14195)
* Add new DD4hep release and some forgotten build requirements

* PR review suggestions

Use master naming convention for development branch, and put versions in decreasing order.
2019-12-18 09:32:23 -06:00
Sinan
a24b973fa4 package/gdal add v2.4.3 (#14204) 2019-12-17 21:57:39 -06:00
Nathan Pinnow
60a22f1a7a Update and Fix ROSE Package (#14186)
* rose: Update boost dependency for rose

* rose: Updated rose to version 0.9.12.45

* rose: Updated jdk dependency

* rose: Updated rose to version 0.9.13.0

* rose: Fixed formatting

* rose: Added maintainer and switch dependency to java@8
2019-12-17 18:18:24 -06:00
Axel Huebl
5db646d768 openPMD-api: 0.10.2 (#14201)
Add the latest release of openPMD-api, v0.10.2
2019-12-17 18:16:26 -06:00
darmac
07f522bed6 add new package : openresty (#14169)
* add new package : openresty

* remove rc version
2019-12-17 14:30:19 -06:00
darmac
6a0d15a5c9 add new package : nicstat (#14173)
* add new package : nicstat

* refine nicstat edit operation

* refine CMODEL regex expression
2019-12-17 14:29:56 -06:00
Brian Van Essen
dc69256a59 Added package for Half C++ header-only library. (#14189)
* Added package for Half C++ header-only library.

Fixed an checksum for Hydrogen 1.3.2.  Cleaned up the Clara package to
not create an empty bin directory.

* Fixed flake8

* Added maintainer
2019-12-17 14:29:31 -06:00
darmac
a52df46e2c add new package : haproxy (#14160)
* add new package : haproxy

* add url_for_version() and refine haproxy build code
2019-12-17 12:50:10 -06:00
darmac
cd8be44f62 add new package : cosbench (#14171)
* add new package : cosbench

* add cosbench depends and remove unstable version

* Update var/spack/repos/builtin/packages/cosbench/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cosbench/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-17 12:48:27 -06:00
Sajid Ali
f657f73e94 tf verbosity to better enable debugging (#14177)
* tf verbosity

* Add more debug flags

	modified:   var/spack/repos/builtin/packages/py-tensorflow/package.py

* Fix later

* More debug/verbose options.

	modified:   var/spack/repos/builtin/packages/py-tensorflow/package.py
2019-12-17 12:46:34 -06:00
Shintaro Iwasaki
1a41380649 sollve: add a version 1.0a2 (#14188) 2019-12-17 12:38:32 -06:00
Yuanqi Wang
8bda848cb9 LAMMPS: Fix USER-REAXC package variant (#14192) 2019-12-17 12:35:06 -06:00
Adam J. Stewart
189eb5b883
Add py-scipy 1.4.0 (#14193) 2019-12-17 10:00:03 -06:00
t-karatsu
d831db37ca adios2: Fix use of builtin __clear_cache (#14123) 2019-12-17 08:08:22 -05:00
Todd Gamblin
a4ff92e42d mrnet: remove nonexisting cti dependency (#14178)
MRNet had an optional dependency on `cti`, which doesn't exist.  Remove
it from the repo, at least until someone adds `cti` back.
2019-12-16 21:03:38 -06:00
Hadrien G
e366d5b559 New ACTS version (#14180) 2019-12-16 10:25:37 -06:00
darmac
9ece934084 add new package : py-s3cmd (#14166)
* add new package : py-s3cmd

* add some depends and move depends behind the version
2019-12-16 10:20:15 -06:00
Peter Scheibel
60580f5871 package hash: gracefully handle @when with non-string args (#14153)
* when constructing package hash, default to including a method in the content hash if we can't determine whether it would be included by examining the AST
* add a test for updated content-hash calculations
* refactor content hash tests to eliminate repeated lines
2019-12-14 14:31:39 -08:00
Mark W. Krentel
410bce91d4 hpctoolkit: update git branch for version 'gpu' (#14155) 2019-12-14 12:37:04 -06:00
Brian Van Essen
34128ca70d Updated Hydrogen version to 1.3.2 (#14156) 2019-12-14 12:36:33 -06:00
darmac
5e9fb6b309 add new package : memcached (#14162) 2019-12-14 12:28:51 -06:00
darmac
986df8c233 add new package : jstorm (#14163) 2019-12-14 12:27:39 -06:00
darmac
0f0e2c4397 add new package : logstash (#14164) 2019-12-14 12:26:43 -06:00
darmac
72390ecd62 add new package : pig (#14165) 2019-12-14 12:26:14 -06:00
darmac
43712b4982 add new package : rabbitmq (#14167) 2019-12-14 12:21:09 -06:00
darmac
2f4521d418 add new package : zookeeper (#14170) 2019-12-14 12:19:40 -06:00
darmac
f40520c6bf add new package : bind9 (#14172) 2019-12-14 12:16:39 -06:00
darmac
33028c8955 add new package : rt-tests (#14174) 2019-12-14 12:12:01 -06:00
Andras Wacha
f757b6f4e5 Patch: explicitly use xbitmaps include dir in the automake package (#14128)
* Patch: explicitly use xbitmaps include dir in the automake package

* Added dependencies required for autoreconf: libtool, autoconf, automake, m4
2019-12-14 10:54:27 -06:00
darmac
7e668b1153 add new package : cassandra (#14144)
* add new package : cassandra

* make stable version as a preferred one
2019-12-13 22:21:18 -06:00
Adam J. Stewart
43e9fe95ea
Add latest version of jq (#14134) 2019-12-13 15:44:09 -06:00
Matthieu Dorier
f589f69a6c FIX: Making berkeley-db package fetch from correct links (#14147)
* making berkeley-db package fetch from oracle website

* removed blank space

* making flake8 happy

* fixing typos and order of versions
2019-12-13 15:19:59 -06:00
Dan Lipsa
0167ceb104 Add shared option to ParaView. (#14131)
* Add shared option to ParaView.

* Use append for one attribute
2019-12-13 15:19:31 -06:00
Adam J. Stewart
83baf35246
Add new aws-parallelcluster package (#14139) 2019-12-13 12:55:15 -06:00
Adam J. Stewart
268914e7a2
Add latest version of py-tabulate (#14138) 2019-12-13 12:54:59 -06:00
Adam J. Stewart
988b377382
Add latest version of py-ipaddress (#14137) 2019-12-13 12:54:42 -06:00
Adam J. Stewart
da501564cb
Add latest version of py-botocore (#14136) 2019-12-13 12:54:23 -06:00
Adam J. Stewart
5db615feca
Add latest version of py-boto3 (#14135) 2019-12-13 12:54:05 -06:00
Adam J. Stewart
2e19a9343b
Add latest version of oniguruma (#14133) 2019-12-13 12:53:44 -06:00
Seth R. Johnson
c659408368 Update CMake to version 3.16 (#14152) 2019-12-13 12:53:19 -06:00
noguchi-k
3e5c926a95 gmodel: fix error (#14140) 2019-12-13 12:53:03 -06:00
darmac
481a920fe8 add new package : activemq (#14142) 2019-12-13 12:51:59 -06:00
darmac
3344bb0a96 add new package : alluxio (#14143) 2019-12-13 12:51:30 -06:00
darmac
03203a86b4 fix libev url (#14066)
* fix libev url

* remove list_url in libev
2019-12-12 22:58:33 -06:00
Sinan
0d7b9de3be compile python with sqlite loadable extensions (#14132) 2019-12-12 22:58:16 -06:00
t-karatsu
ddfca1b2f2 cmake: Fix checksum of 4075.patch (#14125) 2019-12-12 13:57:23 -05:00
iarspider
d98b433a3c Fix py-jupyter-client version ranges (#14126) 2019-12-12 11:31:47 -06:00
Justin S
c2f45fb4da charmpp: fix build failing from broken hardlink (#13922)
* charmpp: fix build failing from broken hardlink

* charmpp: use setup_dependent_build_environment
2019-12-11 20:20:05 -06:00