Commit graph

12687 commits

Author SHA1 Message Date
Paul
c29b74e7ad
Updated FZF package for newer versions. (#18608)
* Support for external find.
* Added latest version (0.22.0) and conditions to package to continue
support for older versions.
2020-09-13 11:27:56 -05:00
Joseph Wang
58f101de88
use github for download (#18657) 2020-09-13 10:23:46 -05:00
Andrew W Elble
a734dabf2b
new package: py-reproject (#18641)
* new package: py-reproject
add setuptools build/run dep to py-astropy-healpix

* fixes

* fix
2020-09-12 15:37:34 -05:00
darmac
85f7a8bf71
Add new package: delta (#18648) 2020-09-12 15:37:14 -05:00
darmac
10dab474ce
cvs: add a patch for segv issue (#18649) 2020-09-12 09:47:39 -05:00
darmac
e355fc16ad
Add new package: dbxtool (#18651) 2020-09-12 09:45:05 -05:00
darmac
3211ac5136
Add new package: geoip-api-c (#18653) 2020-09-12 09:44:28 -05:00
darmac
cde4654525
Add new package: libspiro (#18654) 2020-09-12 09:44:02 -05:00
darmac
6d39e6ebea
Add new package: hping (#18311)
* Add new package: hping

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Fix flake8 errors

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-12 09:36:30 -05:00
darmac
128731ec74
Add new package: jetty-project (#18555)
* Add new package: jetty-project

* refine dependency

* refine maven version
2020-09-12 09:35:38 -05:00
Robert Blake
afb0883762
ncurses: adding external support. (#18609)
* ncurses: adding external support.

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fixing includes.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-11 16:00:11 -05:00
Adam J. Stewart
e7040467f2
NumPy: added v1.19.2 (#18615) 2020-09-11 15:38:24 +02:00
srekolam
1aceb38b89
Changes for hipsparse, rocthrust recipes for rocm_3.7.0 (#18497)
* changes for hipsparse,rocthrust recipes for rocm_3.7.0

* changes to rocrand for 3.7.0

* version changes
2020-09-10 17:33:21 -05:00
srekolam
4a474d9d67
recipes changes for hipblas, rocprim, rocfft, rocsolver for rocm3.7.0 (#18495)
* recipes changes for rocprim,rocfft,rocsolver for rocm3.7.0

* changes to hipcub recipe for rocm-3.7.0

* changes to address review comments
2020-09-10 17:32:41 -05:00
Robert Pavel
29645ceba5
Adding Missing Versions for Flux-Sched/Flux-Core and Compiler Flags (#18612)
* Checksummed New Flux Versions

Checksummed new flux versions to let spack detect them

* Added CXXFlags to build Flux-sched

Added missing cxxflags to build flux-sched
2020-09-10 16:53:28 -05:00
Robert Pavel
3fabdb6e9b
Adding Cuda Variant to SW4Lite (#18590)
* Adding Cuda Variant to SW4Lite

Added cuda variant of sw4lite  as per guidance in README

* Updated SW4Lite+cuda to Current Header Conventions

Updated sw4lite+cuda to use current conventions for spackage include
dirs

* Fixing FLake8 Issue with Sw4lite+cuda Fix

Fixed overly long line and further underlined sticky note reminding me
to run flake8 BEFORE pushing

* Switching to Spack Compiler Wrapper

Switching to spack compiler wrapper for consistency
2020-09-10 16:53:13 -05:00
Tim Haines
ff6ca57dda
Dyninst: add v10.2.1 (#18611) 2020-09-10 16:09:06 -05:00
Rémi Lacroix
114317464b
Orca: update the package. (#18593)
* Orca: Add new versions.

* Orca: Support OpenMPI without the legacy wrappers.

By default, Spack builds OpenMPI without the legacy wrappers when using the Slurm scheduler. This breaks Orca since its binaries are hardcoded to call "mpirun". To workaround this issue, add a "mpirun" wrapper which calls "srun" when required.
2020-09-10 11:55:13 -05:00
Tiziano Müller
2bc9821c43
update CP2K pkg for 8+ (#18607)
* cp2k: do not support ~openmp for v8+

* sirius: version bump

* cp2k: fix overlapping deps for elpa

fixes #18029

* cp2k: update SIRIUS dependency for v8+

* spfft: requires CMake 3.11+

* cp2k: fix build with +sirius
2020-09-10 10:00:31 -05:00
Toyohisa Kameyama
34f4049815
dpdk: Avoid option conflicts between spack wrappers and Makefiles on aarch64 gcc. (#18603) 2020-09-10 09:59:18 -05:00
t-nojiri
e13e2b0d54
prism: support for aarch64 (#18562)
* prism: support for aarch64

* prism: Change patch file.
2020-09-10 09:56:19 -05:00
Adam J. Stewart
25291cf01c
GDAL: fixed Java bindings, added v3.1.3 (#18494) 2020-09-10 15:08:24 +02:00
Tomoki, Karatsu
778e659a03
openfoam: Set 'FOAM_SIGFPE' when using Fujitsu compiler. (#18601) 2020-09-10 15:01:50 +02:00
Tomoki, Karatsu
d4535f3115
fj: fixed homepage URL. (#18602) 2020-09-10 14:55:52 +02:00
Fabian Brandt
fc919e490e
NetworKit: update to v7.1, including dependencies (#18604) 2020-09-10 14:53:16 +02:00
srekolam
651cffae0a
Rocprofiler changes for rocm-3.7.0 release (#18599)
* rocprofiler changes for rocm-3.7.0 release

* fix flake8 errors
2020-09-09 21:43:07 -05:00
Brian Van Essen
87dc324f36
Support older cuda arch capabilties. (#18597) 2020-09-09 21:42:34 -05:00
ketsubouchi
b014ffcd3d
darshan-util: remove return(-1) from void function (#18504)
* darshan-util: remove return(-1) from void function

* Update var/spack/repos/builtin/packages/darshan-util/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/darshan-util/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-09 21:03:59 -05:00
psakievich
7b2c59e6cf
Fix typo in nalu-wind package (#18596) 2020-09-09 19:12:14 -05:00
Paul
9eac1ed6a8
Support external find for gpgme. (#18594) 2020-09-09 17:39:33 -05:00
Christoph Junghans
691e46c4f5
Packages/gamess ri mp2 mini app (#18595)
* gamess-ri-mp2-miniapp: initial import

* flake8

* Update var/spack/repos/builtin/packages/gamess-ri-mp2-miniapp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-09 16:10:59 -06:00
Glenn Johnson
f1652e89af
Add new versions of intel-mkl (#18592) 2020-09-09 15:27:36 -05:00
arjun-raj-kuppala
9c8cfcca0f
Adding hipify-clang and aomp recipe for rocm (#18333)
* Adding aomp recipe for rocm 3.5.0 release

* hipify-clang rocm recipe

* incorporated suggested changes on PR#18333 for rocm aomp recipe

* remove binutils dependency and update to devicelibs tar path
2020-09-09 13:47:51 -05:00
Jen Herting
857530c5ae
[parallel] added version 20200822 (#18591) 2020-09-09 10:58:07 -07:00
Robert Brunner
1ae50f8022
Added specific "@master" version specifier for component libraries when building (#18579)
the develop version of SCR
2020-09-09 12:52:36 -05:00
Jen Herting
f7d1f845f4
[py-thinc] fixed checksum (#18571) 2020-09-09 11:25:06 -05:00
Garth N. Wells
3dedd2e321
(py-)fenics-dolfinx: fix dependencies (#18586)
* Fix (py-)fenics-dolfinx dependencies

* flake8 updates
2020-09-09 10:55:06 -05:00
Ganesh Kumar
4c5151327f
Rocm 3.7 rccl (#18587)
* ROCm 3.5 miopen recipe

* fixing flake8 issues

* cmake variant fix

* min support fix

* variant possible values

* ROCm 3.7 RCCL changes
2020-09-09 10:49:40 -05:00
Ganesh Kumar
a18700a86a
Rocm 3.7 rocm smi (#18522)
* ROCm 3.5 miopen recipe

* fixing flake8 issues

* cmake variant fix

* min support fix

* variant possible values

* ROCm 3.7 support for rocm-smi

* review comments change

* miopen merge conflict resolve

* reverting back from copy_tree to install_tree
2020-09-09 08:22:40 -05:00
Simon Frasch
290b77fe43
spla: Add version 1.1.0 and ROCm support (#18561) 2020-09-09 07:22:53 -05:00
Toyohisa Kameyama
4472914847
audacious: added gettext and iconv dependency. (#18584) 2020-09-09 11:23:01 +02:00
Adam J. Stewart
8494d26c0a
nn-c: fix pic flags (#18478) 2020-09-09 10:25:57 +02:00
Adam J. Stewart
ba47a057f0
py-torchvision: add variant to set image backend (#18500) 2020-09-09 10:16:50 +02:00
Adam J. Stewart
96364235e3
readline: fix build with ncurses~termlib (#18524) 2020-09-09 10:12:46 +02:00
Adam J. Stewart
4307b73299
pcre2: fix libs property (#18525) 2020-09-09 10:11:29 +02:00
Hadrien G
d24532f574
acts: added v0.32 and adapt to latest master changes (#18563) 2020-09-09 09:44:44 +02:00
Adam J. Stewart
346d12dc6c
Pandas: added v1.1.2 (#18580) 2020-09-09 09:32:56 +02:00
t-nojiri
d11705f9d0
r-ff: support for aarch64 (#18585) 2020-09-09 09:01:51 +02:00
darmac
e3cd3fb9eb
Add new package: quartz (#18539) 2020-09-08 21:29:26 -05:00
Martin Aumüller
ab51edecb5
openscenegraph: remove dependency on Qt for newer versions (#18531)
Starting with OpenSceneGraph 3.5.5, support for windows managed by Qt
has been moved to the seperate project osgQt. Hence, a dependency on Qt
is not needed any longer for version 3.5.5 or newer.
In order to still satisfy the dependency on OpenGL, a depends_on('gl')
has been added.
2020-09-08 21:28:27 -05:00
darmac
b1cea5c23e
Add new package: kylin (#18537)
Co-authored-by: root <root@localhost.localdomain>
2020-09-08 21:27:01 -05:00
darmac
275ac86925
Add new package: sqlite-jdbc (#18540) 2020-09-08 21:26:11 -05:00
darmac
0f4f4a2e95
Add new package: orientdb (#18542) 2020-09-08 21:21:35 -05:00
darmac
97b7af01d9
Add new package: nacos (#18543) 2020-09-08 21:20:41 -05:00
darmac
0325cb564b
Add new package: fastjson (#18545) 2020-09-08 21:17:19 -05:00
darmac
a0ba89d84a
Add new package: guacamole-client (#18546) 2020-09-08 21:15:52 -05:00
darmac
a12ced781c
Add new package: jansi-native (#18547) 2020-09-08 21:14:49 -05:00
darmac
fe05fc7fd5
Add new package: jline3 (#18548) 2020-09-08 21:14:00 -05:00
darmac
1ac24aca96
refine efivar install flow (#18557) 2020-09-08 21:08:38 -05:00
Jaroslav Hron
e2e90e4d6b
Update package.py (#18552)
without setting the build enviroment, the installation fails with

```
1 error found in build log:
     35946    fmtutil [INFO]: /usr/local/pkg/Installs/linux-ubuntu18.04-skylake_avx512/gcc7.4.0/texlive/20190410/rgs2nakycorkgzno/t
              exmf-var/web2c/pdftex/pdfcslatex.fmt installed.
     35947    fmtutil [INFO]: Disabled formats: 6
     35948    fmtutil [INFO]: Successfully rebuilt formats: 45
     35949    fmtutil [INFO]: Total formats: 51
     35950    fmtutil [INFO]: exiting with status 0
     35951    ==> [2020-09-07-21:23:21.482745] '/usr/local/pkg/Installs/linux-ubuntu18.04-skylake_avx512/gcc7.4.0/texlive/20190410/
              rgs2nakycorkgzno/bin/x86_64-linux/mtxrun' '--generate'
  >> 35952    /usr/bin/env: 'texlua': No such file or directory
```

May be there is a better way...
2020-09-08 21:05:18 -05:00
Garth N. Wells
af189e3ed9
Fix linking problem on macos (#18564) 2020-09-08 21:01:21 -05:00
Andrew W Elble
520308ad2b
astra: update checksum, add other executables (#18567) 2020-09-08 21:00:27 -05:00
Tom Payerle
7165795c4a
libxmms: add python build dependency (#18566) (#18568)
Build of libxmms requires python, but not in spack dependency list.
See  #18566
2020-09-08 20:59:22 -05:00
Michael Kuhn
017331684e
go: Add 1.15.1 and 1.14.8 (#18575) 2020-09-08 20:56:08 -05:00
Michael Kuhn
e43855bc8f
node-js: Add 14.10.0 and 12.18.3 (#18576) 2020-09-08 20:55:40 -05:00
Michael Kuhn
9c4d79f8cd
npm: Add 6.14.8 (#18577) 2020-09-08 20:55:12 -05:00
Adam J. Stewart
2f4d493744
Cython: add setuptools run-dependency (#18572)
Cython requires a library that is available in Python 3.8, or before
Python 3.8 with setuptools. This specifies that setuptools is a run
dependency to allow running with Python < 3.8
2020-09-08 17:27:49 -07:00
Tamara Dahlgren
6b30cd18d6
Update cray-libsci homepage and install error (#18581) 2020-09-08 16:22:25 -06:00
Michal Sudwoj
7205a75427
Added nvptx variant to rust (#18209)
Co-authored-by: Andrew Gaspar <andrew.gaspar@outlook.com>

Co-authored-by: Andrew Gaspar <andrew.gaspar@outlook.com>
2020-09-08 11:28:59 -05:00
Gvozden Neskovic
c2b33b4444
gromacs: add zen2 target SIMD optimizations (#18551)
Co-authored-by: Gvozden Nešković <neskovic@dev06.compeng.uni-frankfurt.de>
2020-09-08 06:52:56 -06:00
Piotr Luszczek
73110b415d
hpcc: add explicit C99 flag for older GCC versions (#18556) 2020-09-08 08:30:02 +02:00
Mark W. Krentel
850924e423
hpctoolkit: adjust some dependencies (#18558)
Hpctoolkit master and upcoming releases now want the +pic variant for
two dependencies, libunwind and xz.
2020-09-08 08:27:39 +02:00
Axel Huebl
64273da2cc
openPMD-api: added v0.12.0 (#18560) 2020-09-08 08:18:21 +02:00
jthies
dcee0a1d5d
phist: added v1.9.1 (#18529) 2020-09-07 17:52:07 +02:00
ketsubouchi
03a808ec2d
kim-api: add support for Fujitsu compilers (#18533) 2020-09-07 17:47:55 +02:00
Andre Sailer
138e2ad0a1
[LCIO]: changes to install/CPATH for python bindings (#18512) 2020-09-07 10:16:16 -05:00
darmac
b2b7bcd86a
Add new package: kbd (#18436)
* Add new package: kbd

* fix description error
2020-09-07 10:12:47 -05:00
Tim Haines
8b7ca5ef50
capstone: added v4.0.2 (#18534)
This also adds the git branches "master" and "next".
2020-09-07 16:04:23 +02:00
darmac
5e86a131d2
jansi: added new package at v1.18 (#18549) 2020-09-07 16:02:18 +02:00
ketsubouchi
80691fa6d5
gconf: add dependencies (#18406)
* gconf: add dependencies

* gconf: add run type to perl-xml-parser
2020-09-06 22:33:42 -05:00
Andrew W Elble
8ad581e7b3
new package: py-textblob (#18516)
* new package: py-textblob

add variant to py-nltk to allow for data download/installation
add dependencies to py-nltk so that bin/nltk works

* add resources and resource generation script
2020-09-05 11:50:03 -05:00
Satish Balay
b494f50489
petsc4py: repo is migrated from bitbucket to gitlab (#18519) 2020-09-05 10:18:48 -05:00
Massimiliano Culpo
ba257914b3
fujitsu: added new package (#18021)
The package is at the moment not installable, just detectable.

Co-authored-by: Toyohisa Kameyama <kameyama@riken.jp>
2020-09-05 10:40:52 +02:00
Ganesh Kumar
704fc475e3
ROCm3.5 miopen recipe (#18442)
* ROCm 3.5 miopen recipe

* fixing flake8 issues

* cmake variant fix

* min support fix

* variant possible values
2020-09-04 17:02:33 -05:00
Nick Booher
61ae21ee4d
energyplus: add version 9.1 (#18485) 2020-09-04 16:13:53 -05:00
mic84
c5e50b73ef
amrex:: new version 20.09 (#18486) 2020-09-04 16:13:20 -05:00
Tom Payerle
2cc7718edd
bml: Add build dependency on python (#18489) (#18491)
At some point in the build phase a script
spack-src/scripts/convert-template
has a shebang looking for python in the path.

Currently this picks up system python if in invoker's path, but should
be using python from spack, so add a build dependency on python.
2020-09-04 16:12:53 -05:00
Michael Kuhn
518372ccd1
mariadb-c-client: Add 3.1.9 (#18501) 2020-09-04 16:03:43 -05:00
Michael Kuhn
ca2760381b
py-setuptools: Add 50.1.0 and 49.6.0 (#18502) 2020-09-04 16:03:20 -05:00
Michael Kuhn
f836d93da1
rocksdb: Add 6.11.4 (#18503) 2020-09-04 16:01:30 -05:00
Michael Kuhn
f2adf531b3
glib: Add 2.64.5 (#18505) 2020-09-04 16:00:07 -05:00
Michael Kuhn
262edde2c1
libbson, mongo-c-driver: Add 1.17.0 (#18506) 2020-09-04 15:59:43 -05:00
Michael Kuhn
14983401a1
libidn2: Add 2.3.0 (#18507) 2020-09-04 15:59:16 -05:00
Michael Kuhn
972caba882
curl: Add 7.72.0 (#18508) 2020-09-04 15:58:52 -05:00
Michael Kuhn
53bf97298f
gettext: Add 0.21 (#18509) 2020-09-04 15:58:30 -05:00
iarspider
0c03248537
Add madgraph 2.8.0; fix recipe (#18510) 2020-09-04 15:58:04 -05:00
Luke Dalessandro
8e41208c65
Build libtinfo.so "--with-versioned-syms" when it is enabled in ncurses. (#18511)
Many system-installed binaries (at least in Debian) are built against a
libtinfo.so that has versioned symbols. If spack builds a version without this
functionality, and it winds up in the user's LD_LIBRARY_PATH via spack load,
system binaries will begin to complain.

```
$ less log.txt
less: /opt/spack/.../libtinfo.so.6: no version information available (required by less)
```

Co-authored-by: Luke D'Alessandro <ldalessa@uw.edu>
2020-09-04 15:54:44 -05:00
Andrew W Elble
f4d3a1a0cb
new package: py-markovify (#18517) 2020-09-04 15:46:38 -05:00
t-nojiri
f3c4747318
fermikit: added support for aarch64 (#18480) 2020-09-04 19:52:10 +02:00
Adam J. Stewart
6fcec1dcff
Python: default to Python 3.8 (#17798) 2020-09-03 16:15:43 -07:00
Adam J. Stewart
0eca977cc9
py-pillow-simd: fix concretization (#18490) 2020-09-03 15:36:20 -07:00
Adam J. Stewart
7d9f2bf4ed
depends_on cannot handle ^ sigil (#18220)
* depends_on cannot handle ^ sigil

* cardioid+mfem+cuda requires hypre+cuda

* Document this limitation

* Move warning message to Known Issues docs

* Better handling of parmetis dep
2020-09-03 17:31:00 -05:00
Adam J. Stewart
7728b0737b
Add new MavenPackage build system base class (#18185)
* Add new MavenPackage build system base class

* Fix flake8 and doc tests

* More specific regex

* Java 8 required for these packages
2020-09-03 17:30:39 -05:00
Adam J. Stewart
741bb9bafe
install/install_tree: glob support (#18376)
* install/install_tree: glob support

* Add unit tests

* Update existing packages

* Raise error if glob finds no files, document function raises
2020-09-03 10:47:19 -07:00
Adam J. Stewart
098beee295
Pillow-SIMD: use as default PIL provider (#18097)
* Pillow-SIMD: use as default PIL provider

* Fix concretization of pil

* Fix build of older versions of pillow
2020-09-03 10:39:35 -07:00
Michael Kuhn
8c264a9f26
freetype: Add custom headers property (#18440)
freetype's headers are installed in the `freetype2` subdirectory, use a
custom headers property to fix this in dependent packages.
2020-09-03 11:32:41 -05:00
t-nojiri
3a562c0cec
fermi: added patch to support aarch64 (#18479) 2020-09-03 10:06:15 +02:00
psakievich
7c0b356e79
Add test tolerance variant to nalu-wind pkg (#18455)
* Add test tolerance variant to nalu-wind pkg

* flake8 fixes
2020-09-02 20:31:58 -05:00
Gabriel Rockefeller
ced0a8f068
eospac: add version 6.4.1 (#18476) 2020-09-02 20:28:48 -05:00
Andrew W Elble
879bb063f7
new package: corenlp (#18467)
* new package: corenlp

* import os, not os.path
2020-09-02 20:27:56 -05:00
Robert Blake
638f44d842
CUDA_HOME needs to be set, or CUDA is found based on user's PATH. (#18475) 2020-09-02 19:52:00 -05:00
Harmen Stoppels
6d87cbdb52
Add rocm 3.7.0 libs (#18366)
* Add rocm 3.7.0 libs

* Make 3.7.0-only dependency on numactl explicit

* Add rocm-device-libs dep to rocm-clang-ocl

* Update the cmakelists dir in rocm-debug-agant

* Make rocm-debug-agent work on 3.7.0

* Disable tensile host; following rocm-arch recommendations
2020-09-02 19:50:05 -05:00
Adam J. Stewart
443407cda5
Add new RubyPackage build system base class (#18199)
* Add new RubyPackage build system base class

* Ruby: add spack external find support

* Add build tests for RubyPackage
2020-09-02 16:26:36 -07:00
Chris White
e22a0ca5cf
mfem: fix transitive hdf5 static libs (#18457) 2020-09-02 15:06:45 -07:00
Adam J. Stewart
6b20687b26
python: switch to +uuid by default (#18252) 2020-09-02 14:46:58 -07:00
Jose E. Roman
601f97d8a5
New patch release SLEPc 3.13.4 (#18466) 2020-09-02 15:24:07 -05:00
Rémi Lacroix
447ea50bf9
Aria2: Add version 1.35.0. (#18465) 2020-09-02 15:23:40 -05:00
Adam J. Stewart
ba317b01c3
Packages: headers should be lists (#18445) 2020-09-02 13:19:22 -07:00
Nick Booher
0116c44714
ldak: new package at 5.1 (#18431)
* ldak: new package at 5.1

* flake8

* Re-run tests

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-02 11:29:40 -05:00
Auriane R
24843844ae
Add HPX 1.5.0 release and update the homepage (#18464) 2020-09-02 10:34:05 -05:00
Sinan
e5fdb2a46c
new package: py-python-fmask (#18382)
* new package: py-python-fmask

* flake8

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
2020-09-02 10:29:02 -05:00
Sinan
712e7bd2bf
new package: py-gitdb (#18386)
* new package: py-gitdb

* Update var/spack/repos/builtin/packages/py-gitdb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-02 10:28:33 -05:00
Jordan Moxon
aa8e046073
Add blaze versions 3.6-3.8 (#18424) 2020-09-02 10:15:38 -05:00
darmac
f268f65733
Add new package: rasdaemon (#18434) 2020-09-02 10:08:34 -05:00
Gvozden Neskovic
1e05321c8f
gromacs: add support for opencl build (#18461)
Co-authored-by: Gvozden Nešković <neskovic@dev06.compeng.uni-frankfurt.de>
2020-09-02 09:07:43 -06:00
Seth R. Johnson
d904c57d2b
Flibcpp: update version (#18448)
Update available versions and add Fortran check
2020-09-02 11:07:10 -04:00
Paul
1b78a010d8
Updated Hugo package. (#18443)
* Set GOPATH in build environment to avoid creating files in the user's
default GOPATH (e.g. ~/go).
* Support for external find.
* Added latest releease 0.74.3.
2020-09-02 10:03:56 -05:00
ketsubouchi
1026ace6b6
r-boot: checksum mismatch @1.3-23 (#18458) 2020-09-02 10:00:12 -05:00
Weston Ortiz
bf2ded5269
Add gdb TUI variant (#18459) 2020-09-02 09:59:19 -05:00
Mark Olesen
5c94827201
scotch: update to 6.0.10 (released 31-AUG-2020) (#18462)
- added gitlab location, updated the homepage location

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-09-02 09:57:48 -05:00
Seth R. Johnson
9e51b8d165
New package: ForTrilinos (#18456)
Remove prior built-in Trilinos subrepository.

Added a Trilinos conflict discovered while documenting ForTrilinos:
```
   ***
   *** ERROR: Setting Trilinos_ENABLE_SEACASExodus=OFF which was 'ON' because SEACASExodus has a required library dependence on disabled TPL Netcdf!
   ***
```
2020-09-02 08:14:20 -04:00
Axel Huebl
0740a4ac7e
ADIOS: Fix no-MPI Build (#18453)
Do not apply this patch in no-MPI builds. I think this autotools
check logic is generally borked, this will just set it manually to
on/off now.
2020-09-01 18:17:51 -07:00
t-nojiri
ae3f3887a6
ccs-qcd: Change compile option for aarch64 (#17516)
* ccs-qcd: Change compile option for aarch64
2020-09-01 18:03:47 -07:00
Rao Garimella
ea97b37f60
Jali: Fix bugs in CMake section (#18447)
Fix variant name and cmake variable.

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-09-01 15:18:24 -04:00
Jen Herting
e7f1eeb7af
Update dependencies: py-torch-geometric (#18265)
* [py-torch-geometric] depends on py-torch-sparse

* [py-torch-geometric] setting TORCH_CUDA_ARCH_LIST

* [py-torch-geometric] added the rest of the dependencies

* [py-torch-geometric] added cuda variant and added more build env vars

* [py-torch-geometric] added variant info for depenedencies

* [py-torch-geometric] flake8

* [py-torch-geometric] add variant description
2020-09-01 13:44:12 -05:00
darmac
f9a330ae99
Add new package: efivar (#18392) 2020-09-01 10:09:59 -05:00
Nikolay Simakov
12078382b6
Added HPC Challenge Benchmark (#18323)
* HPCC Benchmark: added HPC Challenge (HPCC) benchmark

* HPCC Benchmark: modified error message on lack of fftw2 interface in MKL

* hpcc: fixed styling add one more installation example

* hpcc: styling fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: changed include and lib location setter

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: fixed styling add one more installation example

* hpcc: removed readme.md

* hpcc: develop repo now is in github

* hpcc: march arguments are set explicitly in case of intel compilers, added -restrict flag, which needed for older intel compilers (at least <=19.0.5.281)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-01 09:59:06 -05:00
ketsubouchi
3a5746c6c7
orbit2: new package at v2.14.19 (#18405) 2020-09-01 13:11:55 +02:00
darmac
3701633937
fuse-overlayfs: added new package at v1.1.2 (#18435) 2020-09-01 08:28:27 +02:00
Joseph Wang
ebeb8fb8df
ocaml: allow v4.08 and v4.09 to build with gcc10 (#18254)
fixes #18228.  

This patch doesn't cover all old versions but it allows packages like whizard to build.
2020-09-01 05:53:13 +02:00
Sinan
1c67a304c8
py-tpot: added new package at v0.11.5 (#18385)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-01 05:51:23 +02:00
Xavier Delaruelle
efff025787
environment-modules: added v4.5.3 (#18425) 2020-09-01 05:46:13 +02:00
Brian Van Essen
28ef5c0e27
dihydrogen, hydrogen: dependency on CUB is conditional on CUDA version (#18427)
In CUDA 11, CUB is integrated into the CUDA library.
2020-09-01 05:42:21 +02:00
Tim Haines
7926f84022
elfutils: add support for debuginfod (#18227) 2020-09-01 05:35:18 +02:00
Jeffrey Salmond
9b6c2e80fe
py-llvmlite: added v0.34 (#18432) 2020-09-01 05:33:27 +02:00
Toyohisa Kameyama
b2d2bb694e
openfoam: delete print to screen and updated docstrings/comments (#17985) 2020-09-01 05:31:49 +02:00
darmac
49b47864e9
libpam: added new package at v1.0.9 (#18418) 2020-09-01 05:19:48 +02:00
MichaelLaufer
16e3e28cc8
new package: wrf (#18398)
* wrf: new package

* wrf: fix install dir

* wrf: ndown location

* Add more compiler and nesting options to wrf package

* Fix configure that didn't find pgf90, use tempfile and compile in parallel

* WRF v4.2 with parallel I/O support through pnetcdf

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* extend Package, compiler wrapper now used, small fixes

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* Update var/spack/repos/builtin/packages/wrf/package.py

fixed typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Levi Baber <baberlevi@gmail.com>
Co-authored-by: eXact lab <info@exact-lab.it>
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-31 20:38:36 -05:00
Howard Pritchard
712d80955b
OPENMPI: add 4.0.5 (#18332)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-08-31 20:38:06 -05:00
Julien Loiseau
2d718b56ca
Update package.py (#18426)
Correct boost version to match flecsi
2020-08-31 17:09:39 -06:00
Sinan
e7447f266a
new package: py-update-checker (#18396)
* new package: py-update-checker

* add test deps

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove lint stuff.

Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-31 15:50:21 -05:00
Jen Herting
bc93632c06
New package: py-torch-sparse (#18270)
* [py-torch-sparse] created template

* [py-torch-sparse] added dependencies

* [py-torch-sparse] extends py-torch-scatter

* [py-torch-sparse] added variant cuda and setting env vars

* [py-torch-sparse] added homepage and description. removed fixmes

* [py-torch-sparse] flake8

* [py-torch-sparse] added variant description

* [py-torch-sparse] extends -> depends on

* [py-torch-sparse] added dependencies of py-setuptools and py-pytest-runner
2020-08-31 15:43:30 -05:00
Harmen Stoppels
7c9fe7bcbd
Add more cmake patch versions (#18422) 2020-08-31 10:52:18 -05:00
ketsubouchi
fc251e62d1
new package: dbus-glib (#18400) 2020-08-31 10:52:01 -05:00
darmac
3287050226
Add new package: dosfstools (#18410) 2020-08-31 10:49:50 -05:00
darmac
0d08071e95
Add new package: tesseract (#18411) 2020-08-31 10:49:05 -05:00
darmac
b2e1036316
Add new package: fipscheck (#18412) 2020-08-31 10:48:34 -05:00
darmac
1d54eb3fee
Add new package: libfuse (#18413) 2020-08-31 10:48:10 -05:00
darmac
7ba20239fb
Add new package: hardlink (#18414) 2020-08-31 10:47:46 -05:00
darmac
b8bf34b348
Add new package: libhbaapi (#18415) 2020-08-31 10:47:14 -05:00
darmac
ecc7f19177
Add new package: jimtcl (#18416) 2020-08-31 10:46:48 -05:00
Xavier Delaruelle
7036f41ea5
environment-modules: fix version 4.5.2 install (#18421)
`configure` script of Modules 4.5.2 is a bit too strict and breaks when
special options like `--disable-dependency-tracking` are set. This issue
will be fixed on Modules project starting version 4.5.3
(cea-hpc/modules#354).

This change adapts `configure` options set when installing version 4.5.2
to avoid options unrecognized on this version.

Fix #18420
2020-08-31 10:43:31 -05:00
Toyohisa Kameyama
97f7378097
neovim: build on aarch64 (#18136)
* libvterm: renumber version and add 1.0.3
neovim: build on aarrch64

* Remove unneeded comment.

* libvterm:   newer bazaar snapshot version is set to version 0.0.
neovim: change for libvterm version change, and libtermkey version bug is fixed.

* update libvterm versions.
2020-08-31 10:31:41 -05:00
darmac
c4e966f162
Add new package: byte-unixbench (#18257)
* Add new package: byte-unixbench

* refine install flow

* Update var/spack/repos/builtin/packages/byte-unixbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-31 10:28:53 -05:00
t-nojiri
b0a1a7e9aa
cp2k: Add depend on libxc@4.3.4. (#18346)
* cp2k: Add depend on libxc@4.3.4.

* cp2k: The fix of depend of libxc@4.3.4 was redone.
2020-08-31 10:27:23 -05:00
Jen Herting
122a4719ca
New packages: py-torch-cluster (#18262)
* [py-torch-cluster] created template

* [py-torch-cluster] added dependencies

* [py-torch-cluster] setting TORCH_CUDA_ARCH_LIST

* [py-torch-cluster] limited extends

* [py-torch-cluster] depends on scipy

* [py-torch-cluster] added variant cuda and set env vars

* [py-torch-cluster] added homepage and description. removed fixmes

* [py-torch-cluster] flake8

* [py-torch-cluster] switched to depends_on from extends.

* [py-torch-cluster] added variant description

* [py-torch-cluster] added py-setuptools and py-pytest-runner as dependencies
2020-08-31 10:11:53 -05:00
Jen Herting
f659927938
New package: py-torch-scatter (#18263)
* [py-torch-scatter] created template

* [py-torch-scatter] listed specific version of python

* [py-torch-scatter] extends py-torch

* [py-torch-scatter] setting TORCH_CUDA_ARCH_LIST

* [py-torch-scatter] setting more environemnt variables and added variant cuda

* [py-torch-scatter] added homepage and description. removed fixmes

* [py-torch-scatter] flake8

* [py-torch-scatter] Added variant description

* [py-torch-scatter] extends -> depends_on

* [py-torch-scatter] added dependencies of setup tools and pytest-runner
2020-08-31 10:11:00 -05:00
Jen Herting
47ef8d9deb
New package: py-torch-spline-conv (#18273)
* [py-torch-spline-conv] created template

* [py-torch-spline-conv] specified version of python

* [py-torch-spline-conv] extends py-torch-cluster

* [py-torch-spline-conv] setting TORCH_CUDA_ARCH_LIST

* [py-torch-spline-conv] limiting extension to py-torch

* [py-torch-spline-conv] added cuda variant and setting env vars

* [py-torch-spline-conv] added homepage and description. removed fixmes

* [py-torch-spline-conv] added variant cuda

* [py-torch-spline-conv] flake8

* [py-torch-spline-conv] added variant description

* [py-torch-spline-conv] extends -> depends_on

* [py-torch-spline-conv] added dependencies py-setuptools and py-pytorch-runner
2020-08-31 10:10:21 -05:00
Adam J. Stewart
f4a37b2dc2
Remove unmatched triple quotes (#18272) 2020-08-31 13:05:07 +02:00
Weston Ortiz
86eac24f36
trilinos: added v13.0.0 and PYTHONPATH for exodus.py (#18266) 2020-08-31 12:56:37 +02:00
Dr. Christian Tacke
18fde34d38
singularity: added v3.6.2 (#18353) 2020-08-31 12:21:08 +02:00
Dr. Christian Tacke
c07204d661
glew: added v2.1.0 (#18394) 2020-08-31 11:48:46 +02:00
srekolam
d73db33005
atmi,rocgdb,rocm-dbgapi changes for rocm3.7 (#18404) 2020-08-31 11:36:38 +02:00
ketsubouchi
06ad858be2
libidl: added new package at v0.8.14 (#18403) 2020-08-31 11:34:11 +02:00
Sinan
3a0d273dae
py-py6s: added new package at v1.8.0 (#18407)
Co-authored-by: Sinan81 <Sinan81@earth>
2020-08-31 11:30:22 +02:00
h-denpo
55f490b093
lesstif: added dependency on 'libxext' (#18408) 2020-08-31 11:12:48 +02:00
darmac
1fdaffed3f
minizip: support minizip and miniunz building (#17925)
* minizip: support minizip and miniunz building

* minizip: remove comment

* refine build flow
2020-08-30 22:22:48 -05:00
Toyohisa Kameyama
7f9018e893
lua-luajit: remove duplicated lua-jit and merge to lua-luajit. (#18348) 2020-08-30 19:16:53 -05:00
Sinan
665e5ce0fd
new package: py-planet (#18377)
* new package: py-planet

* flake8

* specify checksum type

* improve dependency specs

* specify dependency

* add test dependencies

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
2020-08-30 10:45:17 -05:00
Sinan
06b551f98e
new package: py-deap (#18378)
* new package: py-deap

* flake8

* fix sha sum

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
2020-08-30 10:44:43 -05:00
Sinan
855e77036e
new package: py-pypeg2 (#18379)
* new package: py-pypeg2

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
2020-08-30 10:44:21 -05:00
Sinan
a43dc51551
new package: py-pysolar (#18380)
* new package: py-pysolar

* latest version depends on python@3, flake8

* add missing dependencies

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
2020-08-30 10:43:54 -05:00
Sinan
376d6119ce
new package: py-rios (#18381)
* new package: py-rios

* flake8

* Update var/spack/repos/builtin/packages/py-rios/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-30 10:43:26 -05:00
Sinan
fc6cf29f0f
new package: py-ssmap (#18383)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2020-08-29 15:50:59 -05:00
Sinan
884e707810
new package: py-stopit (#18384)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2020-08-29 15:50:07 -05:00
vvolkl
a475ef20dd
[heppdt] fix broken url (#18388) 2020-08-29 15:43:27 -05:00
darmac
89df727e5f
Add new pacakge: termcap (#18389) 2020-08-29 15:42:51 -05:00
darmac
e9ea8d1e81
Add new package: wrk (#18390) 2020-08-29 15:42:19 -05:00
darmac
66e006608a
Add new package: cgdcbxd (#18391) 2020-08-29 15:41:52 -05:00
Wouter Deconinck
49df20f1ef
[libdrm] AutotoolsPackage; %gcc@10.0.0 requires CFLAGS=-fcommon (#18393)
* [libdrm] AutotoolsPackage; %gcc@10.0.0 requires CFLAGS=-fcommon

* [libdrm] placate flake8
2020-08-29 15:39:02 -05:00
darmac
586fbe05b5
Bcache (#18103)
* bcache:add pkg-config to find blkid.h in linux-utils

* bcache: fix libuuid race condition in pkgconfig
2020-08-29 11:54:46 -05:00
darmac
b4042f23d0
Add new package: re2 (#18302)
* Add new package: re2

* re2: refine versions
2020-08-29 11:53:29 -05:00
darmac
cf170b5ff1
Add new package: varnish-cache (#18258)
* Add new package: varnish-cache

* Add dependency: python
2020-08-29 11:52:09 -05:00
darmac
8b212c7845
Add new package: leptonica (#18306)
* Add new package: leptonica

* Update var/spack/repos/builtin/packages/leptonica/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-29 11:51:41 -05:00
Christoph Junghans
2204ba18b5
flexiblas: initial add (#18364)
* flexiblas: initial add

* Update package.py
2020-08-29 09:48:48 -06:00
darmac
e58c7af1a3
Add new package: weighttp (#18255) 2020-08-28 23:12:56 -05:00
darmac
e19f971b7b
Add new package: librdkafka (#18256) 2020-08-28 23:12:32 -05:00
srekolam
6739908144
mathlibs- rocrand recipe for amd rocm-3.5.0 release (#18283)
* mathlibs- rocrand recipe for amd rocm-3.5.0 release

* fixing review comments
2020-08-28 23:11:46 -05:00
Andrew W Elble
4b649b2d2b
py-spacy: new version 2.3.2 (#18294)
* py-spacy: new version 2.3.2

update en-core-web-sm to @2.3.1
add en-vectors-web-lg@2.3.0

* update deps

* wasabi

Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
2020-08-28 23:11:13 -05:00
Andrew W Elble
d08d0f2732
new package: qcachegrind@20.08.0 (#18295)
Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
2020-08-28 23:10:58 -05:00